Pre-steady-state kinetic characterization of RNA-primed initiation of transcription by HIV-1 reverse transcriptase and analysis of the transition to a processive DNA-primed polymerization mode

Biochemistry

Volumn 37, Issue 38, 1998, Pages 13349-13358

  Thrall, Sara H ^a,c   Krebs, Ruth ^a   Wöhrl, Birgitta M ^a   Cellai, Luciano ^b   Goody, Roger S ^a   Restle, Tobias ^a  

^a MAX PLANCK INSTITUTE OF MOLECULAR PHYSIOLOGY   (Germany)

^b CNR   (Italy)

^c BRISTOL MYERS SQUIBB   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

THYMIDINE TRIPHOSPHATE;

ARTICLE; CONFORMATIONAL TRANSITION; ENZYME BINDING; ENZYME KINETICS; FLUORESCENCE; KINETICS; POLYMERIZATION; PRIORITY JOURNAL; TRANSCRIPTION INITIATION;

BASE COMPOSITION; BINDING SITES; CATALYSIS; DEOXYRIBONUCLEOTIDES; DNA PRIMERS; DNA, VIRAL; HIV-1 REVERSE TRANSCRIPTASE; KINETICS; RNA; RNA, VIRAL; SUBSTRATE SPECIFICITY; TEMPLATES, GENETIC; TRANSCRIPTION, GENETIC;

EID: 0032558381     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi981102t     Document Type: Article

References (38)

1. Litvak, S., Sarih-Cottin, L., Fournier, M., Andreola, M., and Tarrago-Litvak, L. (1994) Trends Biochem. Sci. 19, 114-118.
2. Mak, J., and Kleiman, L. (1997) J. Virol. 71, 8087-8095.
3. Reardon, J. E., and Miller, W. H. (1990) J. Biol. Chem. 265, 20302-20307.
4. Oude Essink, B. B., Das, A. T., and Berkhout, B. (1996) J. Mol. Biol. 264, 243-254.
5. Isel, C., Lanchy, J.-M., Le Grice, S. F. J., Ehresmann, C., Ehresmann, B., and Marquet, R. (1996) EMBO J. 15, 917-924.
6. Ghosh, M., Williams, J., Powell, M. D., Levin, J. G., and Le Grice, S. F. (1997) Biochemistry 36, 5758-5768.
7. Isel, C., Marquet, R., Keith, G., Ehresmann, C., and Ehresmann, B. (1993) J. Biol. Chem. 268, 25269-25272.
8. Isel, C., Ehresmann, C., Keith, G., Ehresmann, B., and Marquet, R. (1995) J. Mol. Biol. 247, 236-250.
9. Lanchy, J. M., Ehresmann, C., Le Grice, S. F., Ehresmann, B., and Marquet, R. (1996) EMBO J. 15, 7178-7187.
10. Müller, B., Restle, T., Weiss, S., Gautel, M., Sczakiel, G., and Goody, R. S. (1989) J. Biol. Chem. 264, 13975-13978.
11. Milligan, J. F., Groebe, D. R., Witherell, G. W., and Uhlenbeck, O. C. (1987) Nucleic Acids Res. 15, 8783-8798.
12. Jeruzalmi, D., and Steitz, T. A. (1997) J. Mol. Biol. 274, 748-756.
13. Davanloo, P., Rosenberg, A. H., Dunn, J. J., and Studier, F. W. (1984) Proc. Natl. Acad. Sci. U.S.A. 81, 2035-2039.
14. Sambrook, J., Fritsch, E. F., and Maniatis, T. (1994) Molecular Cloning - A Laboratory Manual, Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
15. Divita, G., Müller, B., Immendörfer, U., Gautel, M., Rittinger, K., Restle, T., and Goody, R. S. (1993) Biochemistry 32, 7966-7971.
16. Krebs, R., Immendörfer, U., Thrall, S. H., Wöhrl, B. M., and Goody, R. S. (1997) Biochemistry 36, 10292-10300.
17. Kati, W. M., Johnson, K. A., Jerva, L. F., and Anderson, K. S. (1992) J. Biol. Chem. 267, 25988-25997.
18. Wöhrl, B. M., Krebs, R., Thrall, S. H., Le Grice, S. F. J., Scheidig, A. J., and Goody, R. S. (1997) J. Biol. Chem. 272, 17581-17587.
19. Rittinger, K., Divita, G., and Goody, R. S. (1995) Proc. Natl. Acad. Sci. U.S.A. 92, 8046-8049.
20. Jacobson, A. B., Good, L., Simonetti, J., and Zuker, M. (1984) Nucleic Acids Res. 12, 45-52.
21. Kerr, S. G., and Anderson, K. S. (1997) Biochemistry 36, 14056-14063.
22. Krebs, R. (1998) Ph.D. Thesis, University of Marburg, Germany.
23. Spence, R. A., Anderson, K. S., and Johnson, K. A. (1996) Biochemistry 35, 1054-1063.
24. Kerr, S. G., and Anderson, K. S. (1997) Biochemistry 36, 14064-14070.
25. Suo, Z., and Johnson, K. A. (1997) Biochemistry 36, 12459-12467.
26. Spence, R. A., Kati, W. M., Anderson, K. S., and Johnson, K. A. (1995) Science 267, 988-993.
27. Brautigam, C. A., and Steitz, T. A. (1998) Curr. Opin. Struct. Biol. 8, 54-63.
28. Kunkel, T. A., and Wilson, S. H. (1998) Nat. Struct. Biol. 5, 95-99.
29. Jacobo-Molina, A., Ding, J., Nanni, R. G., Clark, A. D., Lu, X., Tantillo, C., Williams, R. L., Kamer, G., Ferris, A. L., Clark, P., Hizi, A., Hughes, S. H., and Arnold, E. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6320-6324.
30. Doublié, S., Tabor, S., Long, A. M., Richardson, C. C., and Ellenberger, T. (1998) Nature 391, 251-258.
31. Kiefer, J. R., Mao, C., Braman, J. C., and Beese, L. S. (1998) Nature 391, 304-307.
32. Steitz, T. A. (1990) Q. Rev. Biophys. 23, 205-280.
33. Bebenek, K., Beard, W. A., Darden, T. A., Li, L., Prasad, R., Luton, B. A., Gorenstein, D. G., Wilson, S. H., and Kunkel, T. A. (1997) Nat. Struct. Biol. 4, 194-197.
34. Saenger, W. (1984) Priciples of Nucleic Acid Structure, Springer-Verlag New York.
35. Salazar, M., Fedoroff, O. Y., Miller, J. M., Ribeiro, N. S., and Reid, B. R. (1993) Biochemistry 32, 4207-4215.
36. Horton, N. C., and Finzel, B. C. (1996) J. Mol. Biol. 264, 521-533.
37. Gyi, J. I., Lane, A. N., Conn, G. L., and Brown, T. (1998) Biochemistry 37, 73-80.
38. Fedoroff, O. Y., Salazar, M., and Reid, B. R. (1993) J. Mol. Biol. 233, 509-523.