Effect of RNA secondary structure on the kinetics of DNA synthesis catalyzed by HIV-1 reverse transcriptase

Biochemistry

Volumn 36, Issue 41, 1997, Pages 12459-12467

  Suo, Zucai ^a   Johnson, Kenneth A ^a  

^a PENNSYLVANIA STATE UNIVERSITY   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; PRIMER DNA; RNA; RNA DIRECTED DNA POLYMERASE;

ARTICLE; BINDING AFFINITY; CATALYSIS; DNA SYNTHESIS; ENZYME BINDING; ENZYME SUBSTRATE; HUMAN IMMUNODEFICIENCY VIRUS 1; NONHUMAN; PRIORITY JOURNAL; PROTEIN DNA BINDING; RNA STRUCTURE;

BASE SEQUENCE; DNA REPLICATION; DNA, VIRAL; HIV-1; HIV-1 REVERSE TRANSCRIPTASE; HUMANS; KINETICS; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, VIRAL; STRUCTURE-ACTIVITY RELATIONSHIP; VIRUS REPLICATION;

HUMAN IMMUNODEFICIENCY VIRUS; HUMAN IMMUNODEFICIENCY VIRUS 1;

EID: 0030753504     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi971217h     Document Type: Article

References (30)

1. Anderson, K. S., Sikorski, J. A., & Johnson, K. A. (1988) Biochemistry 27, 7395-7406.
2. Barshop, B. A., Wrenn, R. F., & Frieden, C. (1983) Anal. Biochem. 130, 134-145.
3. Dawson, R. M. C., Elliott, D. C., Elliott, W. H., & Jones, K. M. (1987) Data for Biochemical Research, Oxford University Press, NY.
4. Dudding, L. R., Nkabinde, N. C., & Mizrahi, V. (1991) Biochemistry 30, 10498-10506.
5. Groebe, D. R., & Uhlenbeck, O. C. (1988) Nucleic Acids Res. 16, 11725-11735.
6. Hansen, J., Schulze, T., Mellert, W., & Moelling, K. (1980) EMBO J. 7, 239-243.
7. Hoffman, A. D., Banapour, B., & Levy, J. A. (1985) Virology 147, 326-335.
8. Huber, H. E., Macoy, J. M., Seehra, J. S., & Richardson, C. C. (1989) J. Biol. Chem. 264, 4669-4678.
9. Jacobo-Molina, A., Ding, J., Nanni, R. G., Clark, A. D., Jr., Lu, X., Tantillo, C., Williams, R. L., Kamer, G., Ferris, A. L., Clark, P., Hizi, A., Hughes, S. H., & Arnold, E. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 6320-6324.
10. Jaeger, J. A., Turner, D. H., & Zuker, M. (1989) Proc. Natl. Acad. Sci. U.S.A. 86, 7706-7710.
11. Johnson, K. A. (1986) Methods Enzymol. 134, 677-705.
12. Kati, W. M., Johnson, K. A., Jerva, L. F., & Anderson, K. S. (1992) J. Biol. Chem. 267, 25988-25997.
13. Klarmann, G., Schauber, C. A., & Preston, B. D., (1993) J. Biol. Chem. 268, 9733-9802.
14. Kohlstaedt, L. A., Wang, J., Friedman, J., Rice, P. A., & Steitz, T. A. (1992) Science 256, 1783-1790.
15. Le Grice, S. F. J. (1993) in Reverse Transcriptase (Skalka, A. M., & Goff, S. P., Ed.) pp 163-192, Cold Spring Harbor Laboratory Press, Plainview, NY.
16. Milligan J. F., & Uhlenbeck, O. C. (1989) Methods Enzymol. 180, 51-62.
17. Muller, B., Restle, T., Weiss, S., Gautel, M., Sczakiel, G., & Goody, R. S. (1989) J. Biol. Chem. 264, 13975-13978.
18. Olsen, D. B., Carroll, S. S., Culberson, J. C., Shafer, J. A., & Kuo, L. C. (1994) Nucleic Acids Research 22, 1437-1443.
19. Patel, S. S., Wong, I., & Johnson, K. A. (1991) Biochemistry 30, 511-525.
20. Pop, M. P., & Biebricher, C. K. (1996) Biochemistry 35, 5054-5062.
21. Ratner, L., Haseltine W., Patarca, R., Livak, K. J., Starcich, B., Josephs, S. F., Doran, E. R., Rafalski, J. A., Whitehorn, E. A., Baumeister, K., Ivanoff, L., Petteway, S. R., Jr., Pearson, M. L., Lautenberger, J. A., Papas, T. S., Ghrayeb, J., Chang, N. T., Gallo, R. C., & Wong-Staal, F. (1985) Nature 313, 277-284.
22. Reardon, J. E. (1992) Biochemistry 31, 4473-4479.
23. Rey, M. A., Spire, B., Dormont, D., Barre-Sinoussi, & Chermann, J. C. (1984) Biochem. Biophys. Res. Commun. 121, 126-133.
24. Stahlhut, M., Li, Y., Condra, J. H., Fu, J. Gotlib, L., Graham, D. J., & Olsen, D. B. (1994) Protein Expression Purif. 5, 614-621.
25. Suo, Z., & Johnson, K. A. (1997a) Biochemistry 36, 12468-12476.
26. Suo, Z., & Johnson, K. A. (1997b) Biochemistry (manuscript submitted for publication).
27. Wöhrl, B. M., Tantillo, C., Arnold, E., & Le Grice, S. F. J. (1995) Biochemistry 34, 5343-5350.
28. Wong, I., & Lohman, T. M. (1993) Proc. Natl. Acad. Sci. U.S.A. 90, 5428-5432.
29. Zimmerlie, C. T., & Frieden, C. (1989) Biochem. J. 258, 381-387.
30. Zuker, M. (1989) Science 244, 48-52.