Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase

Current Biology

Volumn 8, Issue 2, 1998, Pages 96-108

  Verreault, Alain ^a   Kaufman, Paul D ^a,b   Kobayashi, Ryuji ^a   Stillman, Bruce ^a  

^a Watson School of Biological Sciences   (United States)

^b UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMALIA; EUKARYOTA; SACCHAROMYCES CEREVISIAE;

EID: 0032518442     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0960-9822(98)70040-5     Document Type: Article

References (56)

1. Gasser R, Koller T, Sogo JM: The stability of nucleosomes at the replication fork. J Mol Biol 1996, 258:224-239.
2. Perry CA, Allis C, Annunziato AT: Parental nucleosomes segregated to newly replicated chromatin are underacetylated relative to those assembled de novo. Biochemistry 1993, 32:13615-13623.
3. Smith S, Stillman B: Purification and characterization of CAF-1, a human cell factor required for chromatin assembly during DNA replication. Cell 1989, 58:15-25.
4. Krude T: Chromatin assembly factor 1 (CAF-1) colocalizes with replication foci in HeLa cell nuclei. Exp Cell Res 1995, 220:304-311.
5. Verreault A, Kaufman PD, Kobayashi R, Stillman B: Nucleosome assembly by a complex of CAF-1 and acetylated histones H3/ H4. Cell 1996, 87:95-104.
6. Kaufman PD, Kobayashi R, Kessler N, Stillman B: The p150 and p60 subunits of chromatin assembly factor 1:a molecular link between newly synthesized histones and DNA replication. Cell 1995, 81:1105-1114.
7. Grunstein M: Histone acetylation in chromatin structure and transcription. Nature 1997, 389:349-352.
8. Kuo M-H, Brownell JE, Sobel RE, Ranalli T, Cook R, Edmondson D et al.: Transcription-linked acetylation by Gcn5p of histones H3 and H4 at specific lysines. Nature 1996, 383:269-272.
9. Sobel RE, Cook RG, Perry CA, Annunziato AT, Allis CD: Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4. Proc Natl Acad Sci USA 1995, 92:1237-1241.
10. Ling X, Harkness TAA, Schultz MC, Fisher-Adams G, Grunstein M: Yeast histone H3 and H4 amino termini are important for nucleosome assembly in vivo and in vitro: redundant and position-independent functions in assembly but not in gene regulation. Genes Dev 1996, 10:686-699.
11. Ura K, Kurumizaka H, Dimitrov S, Almouzni G, Wolffe AP: Histone acetylation: influence on transcription, nucleosome mobility and positioning, and linker histone-dependent transcriptional repression. EMBO J 1997, 16:2096-2107.
12. Kleff S, Andrulis ED, Anderson CW, Sternglanz R: Identification of a gene encoding a yeast histone H4 acetyltransferase. J Biol Chem 1995, 270:24674-24677.
13. Parthun MR, Widom J, Gottschling D: The major cytoplasmic histone acetyltransferase in yeast: links to chromatin replication and histone metabolism. Cell 1996, 87:85-94.
14. Kaufman PD, Kobayashi R, Stillman B: Ultraviolet radiation sensitivity and reduction of telomeric silencing in Saccharomyces cerevisiae cells lacking chromatin assembly factor-1. Genes Dev 1997, 11:345-357.
15. Qian Y-W, Wang Y-CJ, Hollingsworth REJ, Jones D, Ling N, Lee EY-HP: A retinoblastoma-binding protein related to a negative regulator of Ras in yeast. Nature 1993, 364:648-652.
16. Qian Y-W, Lee EY-HP: Dual retinoblastoma-binding proteins with properties related to a negative regulator of Ras in yeast. J Biol Chem 1995, 270:25507-25513.
17. Hassig CA, Fleischer TC, Billin AN, Schreiber SL, Ayer DE: Histone deacetylase activity is required for full transcriptional repression by mSin3A. Cell 1997, 89:341-347.
18. Zhang Y, Iratni R, Erdjument-Bromage H, Tempst P, Reinberg D: Histone deacetylases and SAP18, a novel polypeptide, are components of a human Sin3 complex. Cell 1997, 89:357-364.
19. Rundlett SE, Carmen AA, Kobayashi R, Bavykin S, Turner BM, Grunstein M: HDA1 and RPD3 are members of distinct yeast histone deacetylase complexes that regulate silencing and transcription. Proc Natl Acad Sci USA 1996, 93:14503-14508.
20. Boguski MS, Lowe TMJ, Toltoshev CM: dbEST database for "expressed sequence tags". Nat. Genet 1993, 4:332-333.
21. Neuwald AF, Landsman D: GCN5-related N-acetyltransferases belong to a diverse superfamily that includes the yeast SPT10 protein. Trends Biochem Sci 1997, 22:154-155.
22. Luger K, Rechsteiner TJ, Flaus AJ, Waye MMY, Richmond TJ: Characterization of nucleosome core particles containing histone proteins made in bacteria. J Mol Biol 1997, 272:301-311.
23. Böhm L, Crane-Robinson C: Proteases as structural probes for chromatin. Biosci Rep 1984, 4:365-386.
24. Arents G, Burlingame RW, Wang BC, Love WE, Moudrianakis EN: The nucleosomal core histone octamer at 3.1 A resolution: a tripartite protein assembly and a left-handed superhelix. Proc Natl Acad Sci USA 1991, 88:10148-10152.
25. Chang L, Loranger SS, Mizzen C, Ernst SG, Allis CD, Annunziato AT: Histones in transit: cytosolic histone complexes and diacetylation of H4 during nucleosome assembly in human cells. Biochemistry 1997, 36:469-480.
26. Lopez-Rodas G, Tordera V, Sánchez del Pino MM, Franco L: Subcellular localization and nucleosome specificity of yeast histone acetyltransferases. Biochemistry 1991, 30:3728-3732.
27. Makkerh JPS, Dingwall C, Laskey RA: Comparative mutagenesis of nuclear localization signals reveals the importance of neutral and acidic amino acids. Curr Biol 1996, 6:1025-1027.
28. Eberharter A, Lechner T, Goralik-Schramel M, Loidl P: Purification and characterization of the cytoplasmic histone acetyltransferase B of maize embryos. FEBS Lett 1996, 386:75-81.
29. Lopez-Rodas G, Georgieva El, Sendra R, Loidl P: Histone Acetylation in Zea mays I: activities of histone acetyltransferases and histone deacetylases. J Biol Chem 1991, 266:18745-18750.
30. Jackson V, Shires A, Tanphaichitr N, Chalkley R: Modifications to histones immediately after synthesis. J Mol Biol 1976, 104:471-483.
31. Richman R, Chicoine LG, Collini MP, Cook RG, Allis CD: Micronuclei and the cytoplasm of growing Tetrahymena contain a histone acetylase activity which is highly specific for free histone H4. J Cell Biol 1988, 106:1017-1026.
32. Tyler JK, Bulger M, Kamakaka RT, Kobayashi R, Kadonaga JT: The p55 subunit of Drosophila chromatin assembly factor 1 is homologous to a histone deacetylase-associated protein. Mol Cell Biol 1996, 16:6149-6159.
33. Martínez-Balbás MA, Tsukiyama T, Gdula D, Wu C: Drosophila NURF-55, a WD repeat protein involved in histone metabolism. Proc Natl Acad Sci USA, in press.
34. Kadosh D, Struhl K: Repression by Ume6 involves recruitment of a complex containing Sin3 corepressor and Rpd3 histone deacetylase to target promoters. Cell 1997, 89:365-371.
35. Vidal M, Gaber RF: RPD3 encodes a second factor required to achieve maximum positive and negative transcriptional states in Saccharomyces cerevisiae. Mol Cell Biol 1991, 11:6317-6327.
36. Freeman L, Kurumizaka H, Wolffe AP: Functional domains for assembly of histones H3 and H4 into the chromatin of Xenopus embryos. Proc Natl Acad Sci USA 1996, 93:12780-12785.
37. Luger K, Mäder AW, Richmond RK, Sargent DF, Richmond, TJ: Crystal structure of the nucleosome core particle at 2.8 A resolution. Nature 1997, 389:251-260.
38. Georgel PT, Tsukiyama T, Wu C: Role of histone tails in nucleosome remodeling by Drosophila NURF. EMBO J 1997, 16:4717-4726.
39. Kleinschmidt JA, Seiter A, Zentgraf H: Nucleosome assembly in vitro: separate histone transfer and synergistic interaction of native histone complexes purified from nuclei of Xenopus laevis oocytes. EMBO J 1990, 9:1309-1318.
40. Ito T, Bulger M, Kobayashi R, Kadonaga JT: Drosophila NAP-1 is a core histone chaperone that functions in ATP-facilitated assembly of regularly spaced nucleosomal arrays. Mol Cell Biol 1996, 16:3112-3124.
41. Bortvin A, Winston F: Evidence that Spt6p controls chromatin structure by a direct interaction with histones. Science 1996, 272:1473-1476.
42. Edmondson DG, Smith MM, Roth SY: Repression domain of the yeast global represser Tup1 interacts directly with histones H3 and H4. Genes Dev 1996, 10:1247-1259.
43. Ito T, Bulger M, Pazin MJ, Kobayashi R, Kadonaga JT: ACF, an ISWI-containing and ATP-utilizing chromatin assembly and remodeling factor. Cell 1997, 90:145-155.
44. Johnson LM, Kayne PS, Kahn ES, Grunstein M: Genetic evidence for an interaction between SIR3 and histone H4 in the repression of the silent mating loci in Saccharomyces cerevisiae. Proc Natl Acad Sci USA 1990, 87:6286-6290.
45. Braunstein M, Sobel RE, Allis CD, Turner BM, Broach JR: Efficient transcriptional silencing in Saccharomyces cerevisiae requires a heterochromatin histone acetylation pattern. Mol Cell Biol 1996, 16:4349-4356.
46. Miller AM, Nasmyth KA: Role of DNA replication in the repression of silent mating type loci in yeast. Nature 1984, 312: 247-251.
47. Lee DY, Hayes JJ, Pruss D, Wolffe AP: A positive role for histone acetylation in transcription factor access to nucleosomal DNA. Cell 1993, 72:73-84.
48. Vettese-Dadey M, Grant PA, Hebbes TR, Crane-Robinson C, Allis CD, Workman JL: Acetylation of histone H4 plays a primary role in enhancing transcription factor binding to nucleosomal DNA in vitro. EMBO J 1996, 15:2508-2518.
49. Kozak M: Determinants of translational fidelity and efficiency in vertebrate mRNAs. Biochimie 1994, 76:815-821.
50. Harlow E, Lane D: Antibodies: A Laboratory Manual, Cold Spring Harbor: Cold Spring Harbor Laboratory; 1988.
51. Ustav M, Stenlund A: Transient replication of BPV-1 requires two viral polypetides encoded by the E1 and E2 open reading frames. EMBO J 1991, 10:449-457.
52. Li R, Hannon GJ, Beach D, Stillman B: Subcellular distribution of p21 and PCNA in normal and repair-deficient cells following DNA damage. Curr Biol 1996, 6:189-199.
53. Hoffmann A, Chiang C-M, Oelgeschläger T, Xie X, Burley SK, Nakatani Y, Roeder RG: A histone octamer-like structure within TFIID. Nature 1996, 380:356-359.
54. Horiuchi K, Fujimoto D: Use of phospho-cellulose paper disks for the assay of histone acetyltransferase. Anal Biochem 1975, 69:491-496.
55. Thomas JO, Kornberg RD: The study of histone-histone associations by chemical cross-linking. Meth Cell Biol 1978, 18:429-440.
56. Schägger H, von Jagow G: Tricine - sodium dodecyl sulfate - polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa. Anal Biochem 1987, 166:368-379.