Phage-displayed peptide libraries

Current Opinion in Biotechnology

Volumn 9, Issue 4, 1998, Pages 427-436

  Zwick, Michael B ^a   Shen, Juqun ^a   Scott, Jamie K ^a  

^a SIMON FRASER UNIVERSITY   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

ANTIBODY; ENZYME; LIGAND; PEPTIDE LIBRARY; RECEPTOR;

BACTERIOPHAGE; NONHUMAN; PHAGE DISPLAY; PRIORITY JOURNAL; PROTEIN STRUCTURE; REVIEW; STRUCTURE ACTIVITY RELATION;

UNIDENTIFIED BACTERIOPHAGE;

EID: 0032146224     PISSN: 09581669     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0958-1669(98)80017-7     Document Type: Article

References (72)

1. Smith GP. Filamentous fusion phage: novel expression vectors that display cloned antigens on the virion surface. Science. 228:1985;1315-1317.
2. Parmley SF, Smith GP. Antibody-selectable filamentous fd phage vectors: affinity purification of target genes. Gene. 73:1988;305-318.
3. Scott JK, Smith GP. Searching for peptide ligands with an epitope library. Science. 249:1990;386-390.
4. Devlin JJ, Panganiban LC, Devlin PE. Random peptide libraries: a source of specific protein binding molecules. Science. 249:1990;404-406.
5. Cwirla SE, Peters EA, Barrett RW, Dower WJ. Peptides on phage: a vast library of peptides for identifying ligands. Proc Natl Acad Sci USA. 87:1990;6378-6382.
6. Lerner RA. Tapping the immunological repertoire to produce antibodies of predetermined specificity. Nature. 299:1982;593-596.
7. Demangel C, Lafaye P, Mazie JC. Reproducing the immune response against the Plasmodium vivax merozoite surface protein 1 with mimotopes selected from a phage-displayed peptide library. Mol Immunol. 33:1996;909-916.
8. Demangel C, Rouyre S, Alzari PM, Nato F, Longacre S, Lafaye P, Mazie JC. Phage-displayed mimotopes elicit monoclonal antibodies specific for a malaria vaccine candidate. Biol Chem. 379:1998;65-70.
9. Bonnycastle LL, Mehroke JS, Rashed M, Gong X, Scott JK. Probing the basis of antibody reactivity with a panel of constrained peptide libraries displayed by filamentous phage. J Mol Biol. 258:1996;747-762.
10. Goldbaum FA, Velikovsky CA, Dall'Acqua W, Fossati CA, Fields BA, Braden BC, Poljak RJ, Mariuzza RA. Characterization of anti-anti-idiotypic antibodies that bind antigen and an anti-idiotype. Proc Natl Acad Sci USA. 94:1997;8697-8701.
11. Jelinek R, Terry TD, Gesell JJ, Malik P, Perham RN, Opella SJ. NMR structure of the principal neutralizing determinant of HIV-1 displayed in filamentous bacteriophage coat protein. J Mol Biol. 266:1997;649-655.
12. Mennuni C, Santini C, Dotta F, Farilla L, Di Mario U, Fierabracci A, Bottazzo G, Cortese R, Luzzago A. Selection of phage-displayed peptides mimicking type 1 diabetes-specific epitopes. J Autoimmun. 9:1996;431-436.
13. Mennuni C, Santini C, Lazzaro D, Dotta F, Farilla L, Fierabracci A, Bottazzo GF, Di Mario U, Cortese R, Luzzago A. Identification of a novel type 1 diabetes-specific epitope by screening phage libraries with sera from pre-diabetic patients. J Mol Biol. 268:1997;599-606.
14. Phalipon A, Folgori A, Arondel J, Sgaramella G, Fortugno P, Cortese R, Sansonetti PJ, Felici F. Induction of anti-carbohydrate antibodies by phage library-selected peptide mimics. Eur J Immunol. 27:1997;2620-2625.
15. Sibille P, Ternynck T, Nato F, Buttin G, Strosberg D, Avrameas A. Mimotopes of polyreactive anti-DNA antibodies identified using phage-display peptide libraries. Eur J Immunol. 27:1997;1221-1228.
16. Harris SL, Craig L, Mehroke JS, Rashed M, Zwick MB, Kenar K, Toone EJ, Greenspan N, Auzanneau FI, Marino-Albernas JR, et al. Exploring the basis of peptide-carbohydrate crossreactivity: evidence for discrmination by peptides between closely related anti-carbohydrate antibodies. Proc Natl Acad Sci USA. 94:1997;2454-2459.
17. Gaynor B, Putterman C, Valadon P, Spatz L, Scharff MD, Diamond B. Peptide inhibition of glomerular deposition of an anti-DNA antibody. Proc Natl Acad Sci USA. 94:1997;1955-1960.
18. Kieber-Emmons T, Luo P, Qiu J, Agadjanyan M, Carey L, Hutchins W, Westerink MA, Steplewski Z. Peptide mimicry of adenocarcinoma-associated carbohydrate antigens. Hybridoma. 16:1997;3-10.
19. Agadjanyan M, Luo P, Westerink MA, Carey LA, Hutchins W, Steplewski Z, Weiner DB, Kieber-Emmons T. Peptide mimicry of carbohydrate epitopes on human immunodeficiency virus. Nat Biotechnol. 15:1997;547-551.
20. Taki T, Ishikawa D, Hamasaki H, Handa S. Preparation of peptides which mimic glycosphingolipids by using phage peptide library and their modulation on beta-galactosidase activity. FEBS Lett. 418:1997;219-223.
21. Zhang H, Zhong Z, Pirofski LA. Peptide epitopes recognized by a human anti-cryptococcal glucuronoxylomannan antibody. Infect Immun. 65:1997;1158-1164.
22. Valadon P, Nussbaum G, Boyd LF, Margulies DH, Scharff MD. Peptide libraries define the fine specificity of anti-polysaccharide antibodies to Cryptococcus neoformans. J Mol Biol. 261:1996;11-22.
23. Young AC, Valadon P, Casadevall A, Scharff MD, Sacchettini JC. The three-dimensional structures of a polysaccharide binding antibody to Cryptococcus neoformans and its complex with a peptide from a phage display library: implications for the identification of peptide mimotopes. J Mol Biol. 274:1997;622-634.
24. Balass M, Katchalski-Katzir E, Fuchs S. The alpha-bungarotoxin binding site on the nicotinic acetylcholine receptor: analysis using a phage-epitope library. Proc Natl Acad Sci USA. 94:1997;6054-6058.
25. Scherf T, Balass M, Fuchs S, Katchalski-Katzir E, Anglister J. Three-dimensional solution structure of the complex of alpha-bungarotoxin with a library-derived peptide. Proc Natl Acad Sci USA. 94:1997;6059-6064.
26. Gram H, Schmitz R, Zuber JF, Baumann G. Identification of phosphopeptide ligands for the Src-homology 2 (SH2) domain of Grb2 by phage display. Eur J Biochem. 246:1997;633-637.
27. Linn H, Ermekova KS, Rentschler S, Sparks AB, Kay BK, Sudol M. Using molecular repertoires to identify high-affinity peptide ligands of the WW domain of human and mouse YAP. Biol Chem. 378:1997;531-537.
28. Cwirla SE, Balasubramanian P, Duffin DJ, Wagstrom CR, Gates CM, Singer SC, Davis AM, Tansik RL, Mattheakis LC, Boytos CM, et al. Peptide agonist of the thrombopoietin receptor as potent as the natural cytokine. Science. 276:1997;1696-1699.
29. Szardenings M, Tornroth S, Mutulis F, Muceniece R, Keinanen K, Kuusinen A, Wikberg JE. Phage display selection on whole cells yields a peptide specific for melanocortin receptor 1. J Biol Chem. 272:1997;27943-27948.
30. Fukumoto T, Torigoe N, Kawabata S, Murakami M, Uede T, Nishi T, Ito Y, Sugimura K. Peptide mimics of the CTLA4-binding domain stimulate T-cell proliferation. Nat Biotechnol. 16:1998;267-270.
31. Heiskanen T, Lundkvist A, Vaheri A, Lankinen H. Phage-displayed peptide targeting on the Puumala hantavirus neutralization site. J Virol. 71:1997;3879-3885.
32. Gho YS, Lee JE, Oh KS, Bae DG, Chae CB. Development of antiangiogenin peptide using a phage-displayed peptide library. Cancer Res. 57:1997;3733-3740.
33. Choi SJ, Ahn M, Lee JS, Jung WJ. Selection of a high affinity angiogenin-binding peptide from a peptide library displayed on phage coat protein. Mol Cells. 7:1997;575-581.
34. Arap W, Pasqualini R, Ruoslahti E. Cancer treatment by targeted drug delivery to tumor vasculature in a mouse model. Science. 279:1998;377-380.
35. Pasqualini R, Koivunen E, Ruoslahti E. Alpha v integrins as receptors for tumor targeting by circulating ligands. Nat Biotechnol. 15:1997;542-546.
36. Bottger V, Bottger A, Howard SF, Picksley SM, Chene P, Garcia-Echeverria C, Hochkeppel HK, Lane DP. Identification of novel mdm2 binding peptides by phage display. Oncogene. 13:1996;2141-2147.
37. Bottger A, Bottger V, Sparks A, Liu WL, Howard SF, Lane DP. Design of a synthetic Mdm2-binding mini protein that activates the p53 response in vivo. Curr Biol. 7:1997;860-869.
38. Stauffer TP, Martenson CH, Rider JE, Kay BK, Meyer T. Inhibition of Lyn function in mast cell activation by SH3 domain binding peptides. Biochemistry. 36:1997;9388-9394.
39. Wrighton NC, Farrell F, Chang R, Kashyap AK, Barbone FP, Mulcahy LS, Johnson DL, Barrett RW, Jolliffe LK, Dowen WJ. Small peptides as potent mimetics of the protein hormone erythropoietin. Science. 273:1996;458-463.
40. Livnah O, Stura EA, Johnson DL, Middleton SA, Mulcahy LS, Wrighton NC, Dower WJ, Jolliffe LK, Wilson IA. Functional mimicry of a protein hormone by a peptide agonist: the EPO receptor complex at 2.8 Å Science. 273:1996;464-471.
41. Johnson DL, Farrell FX, Barbone FP, McMahon FJ, Tullai J, Hoey K, Livnah O, Wrighton NC, Middleton SA, Loughney DA, et al. Identification of a 13 amino acid peptide mimetic of erythropoietin and description of amino acids critical for the mimetic activity of EMP1. Biochemistry. 37:1998;3699-3710.
42. Wrighton NC, Balasubramanian P, Barbone FP, Kashyap AK, Farrell FX, Jolliffe LK, Barrett RW, Dower WJ. Increased potency of an erythropoietin peptide mimetic through covalent dimerization. Nat Biotechnol. 15:1997;1261-1265.
43. Matthews DJ, Wells JA. Substrate phage: selection of protease substrates by monovalent phage display. Science. 260:1993;1113-1117.
44. O'Boyle DR, Pokornowski KA, McCann P Jr, Weinheimer SP. Identification of a novel peptide substrate of HSV-1 protease using substrate phage display. Virology. 236:1997;338-347.
45. Ke SH, Coombs GS, Tachias K, Navre M, Corey DR, Madison EL. Distinguishing the specificities of closely related proteases. Role of P3 in substrate and inhibitor discrimination between tissue-type plasminogen activator and urokinase. J Biol Chem. 272:1997;16603-16609.
46. Ke SH, Coombs GS, Tachias K, Corey DR, Madison EL. Optimal subsite occupancy and design of a selective inhibitor of urokinase. J Biol Chem. 272:1997;20456-20462.
47. Ploug M, Stergaard S, Laurenborg Hansen LB, Holm A, Dan K. Photoaffinity labeling of the human receptor for urokinase-type plasminogen activator using a decapeptide antagonist. Evidence for a composite ligand-binding site and a short interdomain separation. Biochemistry. 37:1998;3612-3622.
48. Martin F, Volpari C, Steinkuhler C, Dimasi N, Brunetti M, Biasiol G, Altamura S, Cortese R, De Francesco R, Sollazzo M. Affinity selection of a camelized V(H) domain antibody inhibitor of hepatitis C virus NS3 protease. Protein Eng. 10:1997;607-614.
49. Dimasi N, Martin F, Volpari C, Brunetti M, Biasiol G, Altamura S, Cortese R, De Francesco R, Steinkuhler C, Sollazzo M. Characterization of engineered hepatitis C virus NS3 protease inhibitors affinity selected from human pancreatic secretory trypsin inhibitor and minibody repertoires. J Virol. 71:1997;7461-7469.
50. Terskikh AV, Le Doussal JM, Crameri R, Fisch I, Mach JP, Kajava AV. "Peptabody": a new type of high avidity binding protein. Proc Natl Acad Sci USA. 94:1997;1663-1668.
51. Petrenko VA, Smith GP, Gong X, Quinn T. A library of organic landscapes on filamentous phage. Protein Eng. 9:1996;797-801.
52. Iannolo G, Minenkova O, Gonfloni S, Castagnoli L, Cesareni G. Construction, exploitation and evolution of a new peptide library displayed at high density by fusion to the major coat protein of filamentous phage. Biol Chem. 378:1997;517-521.
53. Fack F, Hugle-Dorr B, Song D, Queitsch I, Petersen G, Bautz EK. Epitope mapping by phage display: random versus gene-fragment libraries. J Immunol Methods. 206:1997;43-52.
54. Mattheakis LC, Bhatt RR, Dower WJ. An in vitro polysome display system for identifying ligands from very large peptide libraries. Proc Natl Acad Sci USA. 91:1994;9022-9026.
55. Hanes J, Plückthun A. In vitro selection and evolution of functional proteins by using ribosome display. Proc Natl Acad Sci USA. 94:1997;4937-4942.
56. Vargas-Madrazo E, Lara-Ochoa F, Almagro JC. Canonical structure repertoire of the antigen-binding site of immunoglobulins suggests strong geometrical restrictions associated to the mechanism of immune recognition. J Mol Biol. 254:1995;497-504.
57. MacCallum RM, Martin AC, Thornton JM. Antibody - antigen interactions: contact analysis and binding site topography. J Mol Biol. 262:1996;732-745.
58. Craig L, Sanschagrin PC, Rozek A, Lackie S, Kuhn LA, Scott JK. The role of structure in antibody cross-reactivity between peptides and folded proteins. J Mol Biol. 1998.
59. Jin L, Fendly BM, Wells JA. High resolution functional analysis of antibody - antigen interactions. J Mol Biol. 226:1992;851-865.
60. Jespers L, Jenne S, Lasters I, Collen D. Epitope mapping by negative selection of randomized antigen libraries displayed on filamentous phage. J Mol Biol. 269:1997;704-718.
61. Jenne S, Brepoels K, Collen D, Jespers L. High resolution mapping of the B-cell epitopes of staphylokinase in man using negative selection of a phage-displayed antigen library. J Immunol. 1998.
62. Pessi A, Bianchi E, Crameri A, Venturini S, Tramontano A, Sollazzo M. A designed metal-binding protein with a novel fold. Nature. 362:1993;367-369.
63. Ku J, Schultz PG. Alternate protein frameworks for molecular recognition. Proc Natl Acad Sci USA. 92:1995;6552-6556.
64. McConnell SJ, Hoess RH. Tendamistat as a scaffold for conformationally constrained phage peptide libraries. J Mol Biol. 250:1995;460-470.
65. Roberts BL, Markland W, Ley AC, Kent RB, White DW, Guterman SK, Ladner RC. Directed evolution of a protein: selection of potent neutrophil elastase inhibitors displayed on M13 fusion phage. Proc Natl Acad Sci USA. 89:1992;2429-2433.
66. Wang CI, Yang Q, Craik CS. Isolation of a high affinity inhibitor of urokinase-type plasminogen activator by phage display of ecotin. J Biol Chem. 270:1995;12250-12256.
67. Wu H, Yang WP, Barbas CF III. Building zinc fingers by selection: toward a therapeutic application. Proc Natl Acad Sci USA. 92:1995;344-348.
68. Choo Y, Klug A. Toward a code for the interactions of zinc fingers with DNA: selection of randomized fingers displayed on phage. Proc Natl Acad Sci USA. 91:1994;11163-11167.
69. Nord K, Gunneriusson E, Ringdahl J, Stahl S, Uhlen M, Nygren PA. Binding proteins selected from combinatorial libraries of an alpha-helical bacterial receptor domain. Nat Biotechnol. 15:1997;772-777.
70. Smith GP, Patel SU, Windass JD, Thornton JM, Winter G, Griffiths AD. Small binding proteins selected from a combinatorial repertoire of knottins displayed on phage. J Mol Biol. 277:1998;317-332.
71. Levitan B. Stochastic modeling and optimization of phage display. J Mol Biol. 277:1998;893-916.
72. Scott JK, Loganathan D, Easley RB, Gong X, Goldstein IL. A family of concanavalin A-binding peptides from a hexapeptide epitope library. Proc Natl Acad Sci USA. 89:1992;5398-5402.