Protein patterning

Biomaterials

Volumn 19, Issue 7-9, 1998, Pages 595-609

  Blawas, A S ^a   Reichert, W M ^a  

^a Duke University   (United States)

Author keywords

Biochip; Photochemistry; Photolithography; Protein patterning; Self assembling proteins

Indexed keywords

MOLECULAR STRUCTURE; MONOLAYERS; PHOTOCHEMICAL REACTIONS; PHOTOLITHOGRAPHY; PROTEINS;

BIOCHIPS; PROTEIN PATTERNING;

BIOMATERIALS;

BIOMATERIAL;

CELL GROWTH; PHOTOCHEMISTRY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN BINDING; REVIEW;

BIOTECHNOLOGY; PROTEINS;

EID: 0032053089     PISSN: 01429612     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0142-9612(97)00218-4     Document Type: Review

References (116)

1. [1] Haddon RC, Lamola AA. The molecular electronic device and the biochip computer: present status. Proc Natl Acad Sci USA 1985;82:1874-78.
2. [2] Higgins NA. Biochips; fact or fiction? Electron Power 1985;761-3.
3. [3] Wadhwa G. Biochips and biocomputers - future of computing and medicine. J Sci Ind Res 1990;49:486-91.
4. [4] MacAlear J, Wehrung J. Microsubstrates and method for making micropattern devices. US Patent: 4,103,073, 1978.
5. [5] MacAlear JM, Wehrung JM. Microdevice substrate and method for making micropattern devices. US Patent: 4,103,064, 1978.
6. [6] Kaplan D et al. Photodynamic protein-based photodetector and photodetector system for image detection and processing. US Patent: 5,438,192, 1995.
7. [7] Ekins R. Determination of analyte concentration using two labeling markers. US Patent: 5,171,695, 1992.
8. [8] Lowe CR, Earley FGP. Diagnostic device incorporating a biochemical ligand. US Patent: 4,562,157, 1985.
9. [9] Clark N, Douglas K, Rothschild K. Self-assembled nanometer lithographic masks and templates and method for parallel fabrication of nanometer scale multi-device structures. US Patent: 4,728,591, 1988.
10. [10] Dandekar T. Biosensor. US Patent: 4,777,019, 1988.
11. [11] Felten JJ. Non-photographic method for patterning organic polymer films. US Patent: 5,032,216, 1991.
12. [12] Pirrung M, Read JL, Fodor SP, Stryer L. Large scale solid phase synthesis of polypeptides and receptor binding screening thereof. US Patent: 5,142,854, 1992.
13. [13] Matsuda T, Inoue K, Tani N. Control of cell arrangement. US Patent: 5,202,227, 1993.
14. [14] Lichenwalter K, Melton H. Holographic based bio-assay. US Patent: 5,352,582, 1994.
15. [15] Ligler F, Bhatia S, Shriver-Lake L, George J, Calvert J, Dulcey C. Surface modification to create regions resistant to adsorption of biomolecules. US Patent: 5,391,463, 1995.
16. [16] Barret R, Pirrung M, Stryer L, Holmes C, Sundberg S. Spatially-addressable immobilization of anti-ligands on surfaces. US Patent: 5,252,743, 1993.
17. [17] Fodor S, Stryer L, Winkler J, Holmes C, Solas D. Photolabile nucleoside and peptide protecting groups. US Patent: 5,489,678, 1996.
18. [18] Kumar A, Whitesides G. Formation of microstamped patterns on surfaces and derivative articles. US Patent: 5,512,131, 1996.
19. [19] Holmes C. Immobilized molecular synthesis of systematically substituted compounds. US Patent: 5,527,681, 1996.
20. [20] Tarlov MJ. Process for UV-patterning of thiolate monolayer self-assembly on gold, silver and other substrates. US Patent: 5,514,501, 1996.
21. [21] Georger Jr JH, Stenger DA, Fare LT. Deep UV photolithography to define ultra-thin films for selective cell adhesion and outgrowth and method of manufacturing the same and devices containing the same. US Patent: 5,510,628; 5,324,591, 1996; 1994.
22. [22] Miyahara Y, Morizumi T, Ichimura K. Integrated enzyme FETs for simultaneous detections of urea and glucose. Sensors Actuators 1985;7(1):1-10.
23. [23] Kimura J, Kuriyama T, Kawana Y. An integrated SOS/FET multi-biosensor and its application in medical use. In: Third Int. Conf. on Solid-State Sensors and Actuators (Transducers '85), Philadelphia, PA, 1985.
24. [24] Wen CC, Lauks I, Zemel JN. Valinomycin-doped photoresist layers for potassium ion sensing. Thin Solid Films 1980;70:333-40.
25. [25] Hanazato Y, Nakako M, Maeda M, Shiono S. Glucose sensor based on a field-effect transistor with a photolithographically patterned glucose oxidase membrane. Analy Chim Acta 1987;193:87-96.
26. [26] Vopel T, Ladde A, Müller H. Amperometric glucose sensor with a photolithographically patterned enzyme membrane. Analy Chim Acta 1991;251:117-20.
27. [27] Hockberger P, Lom B, Soekarno A, Healey K, Cellular engineering control of cell-substrate interactions. In: Hoch H, Jelinski L, Craighead H, editors. Nanofabrication and biosystems: integrating material science, engineering and biology. New York: Cambridge University Press, 1996.
28. [28] Lin JN, Andrade JD, Chang I-N. The influence of adsorption of native and modified antibodies on their activity. J Imm Methods 1989;125:67-77.
29. [29] Butler JE. The behavior of antigens and antibodies immobilized on a solid phase. In: Van Regebmortel, MHV, editor. Structure of antigens. Boca Raton, FL: CRC Press, 1992;209-59.
30. [30] Soderquist ME, Walton AG. Structural changes in proteins on polymer surfaces. J Colloid Interface Sci 1980;75(2):386-97.
31. [31] Andrade JD, Hlady V. Protein adsorption and materials biocampatibility: a tutorial review and suggested hypotheses. In: Dusek K, editor. Advances in polymer science. Berlin: Springer, Heidelberg, 1986.
32. [32] Norde W, Lykleman J. Why proteins prefer interfaces. J Biomater Sci Polym Ed 1991;2(3):183-202.
33. [33] Plueddemann E. Silane coupling agents, 2 edn. New York: Plenum Press, 1991:1-250.
34. [34] Lin JN, Herron J, Andrade JD, Brizgys M. Characterization of immobilized antibodies on silica surfaces. IEEE Trans Biomed Engng 1988;35(6):466-71.
35. [35] Pope NM, Kulcinski DL, Hardwick A, Chang Y-A. New applications of silane coupling agents for covalently binding antibodies to glass and cellulose solid supports. Bioconjugate Chem 1993;4:166-71.
36. [36] Bhatia SK et al. Use of thiol-terminal silanes and heterobifunctional cross linkers for immobilization of antibodies on silica surfaces. Analy Biochem 1989;178:408-13.
37. [37] Alarie JP, Sepaniak, M. Vo-Dinh T. Evaluation of antibody immobilization techniques for fiber optic-based fluoroimmunosensing. Analy Chim Acta 1990;229:169-76.
38. [38] Owaku K, Goto M, Ikariyama Y, Aizawa M. Optical immunosensing for IgG. Sensors Actuators B 1993;13-14: 723-4.
39. [39] Schramm W, Paek S-H. Antibody-antigen complex formation with immobilized immunoglobulins. Anal Biochem 1992;205: 47-56.
40. [40] Wilchek M, Bayer E. The avidin-biotin complex in immunology. Immunology Today 1984;5(2):39-43.
41. [41] Wilchek M, Bayer E. Applications of avidin-biotin technology. Methods in Enzymol (1990) 184.
42. [42] Guesdon JL, Ternynck T, Avrameas S. The use of avidin-biotin interaction in immunoenzymatic techniques. J Histochem Cytochem 1979;27:1131.
43. [43] Miralles F, Takeda Y, Escribano MJ. Comparison of carbohydrate and peptide biotinylation on the immunological activity of IgG1 murine monoclonal antibodies. J Immunol Methods 1991;140:191-6.
44. [44] O'Shannessy DJ, Quareles RH. Labeling of the oligiosaccharide moieties on immunoglobulins. J Immunol Methods 1987; 19:153.
45. [45] Firestone M, Shank M, Sligar S. Film architecture in biomolecular assemblies. Effect of linker on the orientation of genetically engineered surface-bound proteins. J Amer Chem Soc 1996; 118:9033-41.
46. [46] Whitesides GM. Self-assembling materials. Sci Amer 1995; 146-9.
47. [47] Sigrist H et al. Surface immobilization of biomolecules by light. Optic Eng 1995;34(8):2339-48.
48. [48] Thomas D. Nanotechnology's many disciplines. Biotechnology 1995;13:439-43.
49. [49] Kleinfeld D, Kahler KH, Hockberger PE. Controlled outgrowth of dissociated neurons on patterned substrates. Neurosci 1988;8(11):4098-120.
50. [50] Britland S, Clark P, Moores G. Micropatterned substratum adhesiveness: a model for morphogenic cues controlling cell behavior. Exp Cell Res 1992;198:124-9.
51. [51] Healy KE et al. Kinetics of bone cell organization and mineralization on materials with patterned surface chemistry. Biomaterials 1996;17:195-208.
52. [52] Lom B, Healey K, Hockberger P. A versatile technique for patterning biomolecules onto glass coverslips. J Neurosci Methods 1993;50:385-97.
53. [53] Britland S, Perez-Arnaud E, Clark P, McGinn B, Connolly P, Moores G. Micropatterning proteins and synthetic peptides on solid supports: a novel application for microelectronics fabrication technology. Biotechnol Progr 1992;8(2):155-60.
54. [54] Pillai VNR. Photosensitive protecting groups. Synthesis 1980;92(21):1-25.
55. [55] Das M, Fox CF. Chemical crosslinking in biology. Ann Rev Biophys Bioeng 1979;8:165-93.
56. [56] Pritchard DJ, Morgan H, Cooper JM. Patterning and regeneration of surfaces with antibodies. Analy Chem 1995;67(19): 3605-7.
57. [57] Sugawara T, Matsuda T. Photochemical surface derivatization of a peptide containing Arg-Gly-Asp (RGD). J Biomed Mater Res 1995;29:1047-52.
58. [58] Matsuda T, Inoue K, Sugawara T. Development of micropatterning technology for cultured cells. Trans Am Soc Artif Int Organs 1990;36(3):M559-63.
59. [59] Matsuda T, Inoue K. Novel photoreactive surface modification technology for fabricated devices. Tran Am Soc Artif Int Organs 1990;36:161-4.
60. [60] Yan M, Cai S, Wybourne M, Keana J. N-hydroxysuccinimide ester functionalized perfluorophenyl azides as novel photoactive heterobifunctional cross-linking reagents. The covalent immobilization of biomolecules to polymer surfaces. Bioconjugate Chem 1994;5:151-7.
61. [61] Yan M, Cai SX, Wybourne MN, Keana JFW. Photochemical functionalization of polymer surfaces and the production of biomolecule-carrying micrometer-scale structures by deep-UV lithography using 4-substitutes perfluorophenyl azides. J Am Chem Soc 1993;115:814-6.
62. [62] Pease AC, Solas D, Sullivan EJ, Cronin MT, Holmes CP, Fodor SPA. Light-generated oligonucleotide arrays for rapid DNA sequence analysis. Proc Natl Acad Sci USA 1994;91:5022-26.
63. [63] Pirrung MC, Huang C-Y. A general method for the spatially defined immobilization of biomolecules on glass surfaces using 'caged' biotin. Bioconjugate Chem 1996;7:317-21.
64. [64] Fodor S, Leighton Read J, Pirrung M, Stryer L, Tsai Lu A, Solas D. Light-directed spatially addressable parallel chemical synthesis. Science 1991;251:767-72.
65. [65] Blawas AS, Huang C-Y, Pirrung MC, Reichert WM, Patterning antibodies for multiple analyte sensor via photodeprotection chemistry. San Jose: SPIE, 1996.
66. [66] Gao H, Sänger M, Lunginbühl R, Sigrist H. Immunosensing with photoimmobilized immunoreagents on planar optical wave guides. Biosensors Bioelectron 1995;10:317-28.
67. [67] Allara DL. Critical issues in applications of self-assembled monolayers. Biosensors Bioelectron 1995;10:771-83.
68. [68] Dulcey C, Georger J, Krauthamer V, Stenger D, Fare T, Calvert J. Deep UV photochemistry of chemisorbed monolayers: patterned coplanar molecular assemblies. Science 1991;252: 551-4.
69. [69] Stenger D et al. Coplanar molecular assemblies of amino-and perfluorinated alkylsilanes: characterization and geometric definition of mammalian call adhesion and growth. J Am Chem Soc 1992;114:8435-42.
70. [70] Spargo BJ, Testoff MA, Nielsen TB, Stenger DA, Hickman JJ, Rudolph AS. Spatially controlled adhesion, spreading, and differentiation of endothelial cells on self-assembled molecular monolayers. Proc Natl Acad Sci 1994;91:11070-74.
71. [71] Mooney JF, Hunt AJ, McIntosh JR, Librerko CA, Walba DM, Rogers CT. Patterning of functional antibodies and other proteins by photolithography of silane monolayers. Proc Natl Acad Sci 1996;93:12287-91.
72. [72] Matsuzawa M, Potember RS, Stenger DA, Krauthamer V. Containment and growth of neuroblastoma cells on chemically patterned substrates. J Nuerosci Methods 1993;50: 253-60.
73. [73] Knoll W, Liley M, Piscevic D, Spinke J, Tarlov MJ. Supramolecular architectures for the functionalization of solid surfaces. Adv Biophysics 1997;34:231-51.
74. [74] López GP, Biebuyuck H, Kumar A, Whitesides G. Fabrication and imaging of two-dimensional patterns of proteins on self-assembled monolayers by scanning electron microscopy. J Am Chem Soc 1993;115:10774-81.
75. [75] López GA, Albers MW, Schreiber SL, Carroll R, Peralta E, Whitesides G. Convenient methods for patterning the adhesion of mammalian cells to surfaces using self assembled monolayers on gold. J Am Chem Soc 1993;115:5877-8.
76. [76] Kumar A, Abbott N, Kim E, Biebuyck H, Whitesides G. Patterned self-assembled monolayers and meso-scale phenomena. Acc Chem Res 1995;28:219-26.
77. [77] Singhvi R et al. Engineering cell shape and function. Science 1994;264:696-8.
78. [78] Tender LM, Worley RL, Fan H, Lopez G. Electrochemical patterning of self-assembled monolayers onto microscopic arrays of gold electrodes fabricated by laser ablation. Langmuir 1996;12:5515-18.
79. [79] Delamarche E et al. Immobilization of antibodies on a photoactive self-assembled monolayer on gold. Langmuir 1996;12: 1997-2006.
80. [80] Morales P, Pavone A, Sperandei M, Leter G, Nencini L. Mosiello L, A laser assisted deposition technique suitable for the fabrication of biosensors and molecular electronic devices. Biosensors Bioelectron 1995;10:847-52.
81. [81] Vargo TG et al. Monolayer chemical lithography and characterization of fluoropolymer films. Langmuir 1992;8:130-4.
82. [82] Vogt R, Phillips D, Henderson O, Whitfield W, Spierto F, Quantitative differences among various proteins as blocking agents for ELISA microtiter plates. J Immunol Methods 1987;101:43-50.
83. [83] Pritchard DJ, Morgan H, Cooper JM, Micron-scale patterning of biological molecules. Angew Chem Int Ed Engl 1995;34(1):91-2.
84. [84] Savage MD, Mattson G, Desai S, Nielander G, Morgensen S, Conklin E, Avidin-Biotin: a handbook. Rockford, IL: Pierce Chemical Company, 1992:25-86.
85. [85] Bhatia SK et al. Fabrication of surfaces resistant to protein adsorption and application to 2-D protein patterning. Analy Biochem 1993;208:197-205.
86. [86] Schena M, Shalon D, Davis RW, Brown PO. Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 1995;270:467-70.
87. [87] Gombotz W, Guanghui W, Horbett T, Hoffman A. Protein adsorption to poly(ethylene oxide) surfaces. J Biomed Mater Res 1991;25:1547-62.
88. [88] Connolly P, Cooper J, Moores GR, Shen J, Thompson G. Development of molecular patterning and immobilization techniques for scanning tunnelling microscopy and atomic force microscopy. Nanotechnology 1991;2:160-3.
89. [89] Frediani C et al. Scanning force microscopy of protein patterns. Nanotechnology 1994;5(2):95.
90. [90] Mazzola LT, Fodor SPA. Imaging biomolecule arrays by atomic force microscopy. Biophys J 1995;68:1653-60.
91. [91] Gao H, Sänger M, Luginbühl R, Sigrist H. Immunosensing with photo-immobilized immunoreagents on planar optical wave guides. Biosensors Bioelectron 1995;10:317-28.
92. [92] Morgan H, Pritchard DJ, Cooper JM. Photo-patterning of sensor surfaces with biomolecular structures: charaterisation using AFM and fluorescence microscopy. Biosensors Bioelectron 1995;10:841-6.
93. [93] Whitesides GM, Mathias J, Seto CT. Molecular self-assembly and nanochemistry: a chemical strategy for the synthesis of nanometer structures. Science 1991;254:1312-19.
94. [94] Edgington S. Biotech's new nanotools. Biot/technology 1994;12:468-71.
95. [95] Rohrer H. The nanoworld: chances and challenges. Microelectron Eng 1996;32:5-14.
96. [96] Hoch HC, Bojko RJ, Comeau GL, Lilienfeld DA. Microfabricated surfaces in signaling for cell growth and differentiation in fungi. In: Hoch HC, Jelinski LW, Craighead HG, editors. Nanofabrication and biosystems. New York: Cambridge University Press, 1996.
97. [97] Sleytr U, Sara M. Ultrafiltration membranes with uniform pores from crystalline bacterial cell envelope layers. Appl Microbiol Biotechnol 1986;25:83-90.
98. [98] Sleytr U, Sara M, Messner P, Pum D. Application potential of 2D protein crystal (S-layers). Ann New York Acad Sci 1994;745:261-9.
99. [99] Douglas K, Clark N, Rothschild K. Nanometer molecular lithography. Appl Phys Lett 1986;48(10) 676-8.
100. [100] Chilkoti A. Personal communication, 1996.
101. [101] Hulteen JC, Van Duyne RP. Nanosphere lithography: a material general fabrication process for periodic particle array surfaces. J Vacuum Sci Technol 1995;A13(3):1553-8.
102. [102] Birge R. Protein-based optical computing and memories. Computer 1992:25;56-67.
103. [103] Ratner BD. New ideas in biomaterial science - a path to engineered biomaterials. J Biomed Mater Res 1993;27:837-50.
104. [104] Nanotechnology (biochips and molecular manufacturing). IEEE Micro 1992;12:76-7.
105. [105] Aviram A. Molecules for memory, logic and amplification. J Am Chem Soc 1988;110:5687-92.
106. [106] Hong FT. The bacteriorhodopsin model membrane system: a prototype molecular computing element. BioSystems 1986; 19:223-36.
107. [107] Robinson BH, Seema NC. The design of a biochip: a self-assembling molecular-scale memory device. Protein Eng 1987; 1(4):295-300.
108. [108] Rambidi NG. Nondiscrete biomolecular computing. Computer 1992;25:51-4.
109. [109] Zhao XM, Xia Y, Whitesides GM. Fabriction of three-dimensional microstructures: microtransfer molding. Adv Mater 1996;8(10):837-40.
110. [110] Not biochips? There may yet be computers made with organic molecules. Sci Am 1990;263:136-8 diag.
111. [111] Ghandiri MR, Kobayashi K, Granja J, Chadha R, McRee D. The structural and thermodynamic basis for the formation of self-assembled peptide nanotubes. Angew Chem Int Ed Engl 1995;34(1) 93-6.
112. [112] Sleytr UB, Pum D, Sára M, Messner P. Two-dimensional protein crystals as patterning elements in molecular nanotechnology. In: AIP Conf. Molecular Electronics-Science and Technology, AIP. St. Thomas, Virgin Islands, 1991.
113. [113] O'Neill C, Jordan P, Riddle P, Ireland B. Narrow linear strips of adhesive substratum are powerful inducers of both growth and total focal contact area. J Cell Sci 1990;95:577-86.
114. [114] Grinnell F. Focal adhesions and substratum-bound fibronectin. J Cell Biol 1986;103:2697-714.
115. [115] Bhat VD, Truskey G, Reichert WM. Using avidin mediated binding to enhace initial endothelial attachment and spreading. J Biomed Mater Res 1998;40:57-65.
116. [116] Chen CS, Mrksich M, Huang S, Whiteside GM, Ingber DE. Geometric control of cell life and death. Science 1997;276: 1425-28.