메뉴 건너뛰기




Volumn 14, Issue 9, 1998, Pages 789-802

A method for comparing circular genomes from gene locations: Application to mitochondrial genomes

Author keywords

[No Author keywords available]

Indexed keywords

MITOCHONDRIAL DNA;

EID: 0031772932     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/14.9.789     Document Type: Article
Times cited : (5)

References (44)
  • 1
    • 0029993075 scopus 로고    scopus 로고
    • Parametric genome rearrangement
    • Blanchette, M., Kunisawa, T. and Sankoff, D. (1996) Parametric genome rearrangement. Gene, 172, GC11-17.
    • (1996) Gene , vol.172
    • Blanchette, M.1    Kunisawa, T.2    Sankoff, D.3
  • 2
    • 15444350252 scopus 로고    scopus 로고
    • The complete genome sequence of Escherichia coli K-12
    • Blattner, F.R. et al. (1997) The complete genome sequence of Escherichia coli K-12. Science, 277, 1453-1474.
    • (1997) Science , vol.277 , pp. 1453-1474
    • Blattner, F.R.1
  • 3
    • 0028976102 scopus 로고
    • Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements
    • Boore, J.L., Collins, T.M., Stanton, D., Daehler, L.L. and Brown, W.M. (1995) Deducing the pattern of arthropod phytogeny from mitochondrial DNA rearrangements. Nature, 376, 163-165.
    • (1995) Nature , vol.376 , pp. 163-165
    • Boore, J.L.1    Collins, T.M.2    Stanton, D.3    Daehler, L.L.4    Brown, W.M.5
  • 5
    • 16044367245 scopus 로고    scopus 로고
    • Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschit
    • Bult, C.J. et al. (1996) Complete genome sequence of the methanogenic archaeon, Methanococcus jannaschit. Science, 273, 1058-1073.
    • (1996) Science , vol.273 , pp. 1058-1073
    • Bult, C.J.1
  • 6
    • 0023231203 scopus 로고
    • Duplication and rèmoulding of transfer RNA genes during the evolutionary rearrangement of mitochondrial genomes
    • Cantatore, P., Gadaleta, M., Robert, M., Saccone, C. and Wilson, A C. (1987) Duplication and rèmoulding of transfer RNA genes during the evolutionary rearrangement of mitochondrial genomes. Nature, 329, 853-855.
    • (1987) Nature , vol.329 , pp. 853-855
    • Cantatore, P.1    Gadaleta, M.2    Robert, M.3    Saccone, C.4    Wilson, A.C.5
  • 7
    • 0024962173 scopus 로고
    • The complete nucleotide sequence, gene organization and genetic code of the mitochondrial genome of Paracentrotus lividus
    • Cantatore, P., Roberti, M., Rainaldi, G., Gadaleta, M. and Saccone, C. (1989) The complete nucleotide sequence, gene organization and genetic code of the mitochondrial genome of Paracentrotus lividus. J. Biol. Chem., 264, 10965-10975.
    • (1989) J. Biol. Chem. , vol.264 , pp. 10965-10975
    • Cantatore, P.1    Roberti, M.2    Rainaldi, G.3    Gadaleta, M.4    Saccone, C.5
  • 8
    • 0027398565 scopus 로고
    • The mitochondrial genome of the honeybee Apis mellifera: Complete sequence and genome organization
    • Crozier, R.H. and Crozier, Y.C. (1993) The mitochondrial genome of the honeybee Apis mellifera: complete sequence and genome organization. Genetics, 133, 97-117.
    • (1993) Genetics , vol.133 , pp. 97-117
    • Crozier, R.H.1    Crozier, Y.C.2
  • 9
    • 0032568375 scopus 로고    scopus 로고
    • The complete genome of the hyperthermophilic bacterium Aquifex aeolicus
    • Deckert, G. et al. (1998) The complete genome of the hyperthermophilic bacterium Aquifex aeolicus. Nature, 392, 353-358.
    • (1998) Nature , vol.392 , pp. 353-358
    • Deckert, G.1
  • 10
    • 0025343497 scopus 로고
    • Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates
    • Desjardins, P. and Morais, R. (1990) Sequence and gene organization of the chicken mitochondrial genome. A novel gene order in higher vertebrates. J. Mol. Biol., 212, 599-634.
    • (1990) J. Mol. Biol. , vol.212 , pp. 599-634
    • Desjardins, P.1    Morais, R.2
  • 11
    • 0032568439 scopus 로고    scopus 로고
    • Microbial genomes opened up
    • Doolittle, R.F. (1998) Microbial genomes opened up. Nature, 392, 339-342.
    • (1998) Nature , vol.392 , pp. 339-342
    • Doolittle, R.F.1
  • 13
    • 0000110964 scopus 로고
    • A correlation coefficient for circular data
    • Fisher, N.I. and Lee, A.J. (1983) A correlation coefficient for circular data. Biometrika, 70, 327-332.
    • (1983) Biometrika , vol.70 , pp. 327-332
    • Fisher, N.I.1    Lee, A.J.2
  • 14
    • 0029653518 scopus 로고
    • Whole-genome random sequencing and assembly of Haemophilus influenzae Rd
    • Fleischmann, R.D. et al. (1995) Whole-genome random sequencing and assembly of Haemophilus influenzae Rd. Science, 269, 496-512.
    • (1995) Science , vol.269 , pp. 496-512
    • Fleischmann, R.D.1
  • 15
    • 0029619268 scopus 로고
    • The sequence, organization and evolution of the Locusta migratoria mitochondrial genome
    • Flook, P.K., Rowell, C.H.F. and Gellissen, G. (1995) The sequence, organization and evolution of the Locusta migratoria mitochondrial genome. J. Mol. Evol., 41, 928-941.
    • (1995) J. Mol. Evol. , vol.41 , pp. 928-941
    • Flook, P.K.1    Rowell, C.H.F.2    Gellissen, G.3
  • 16
    • 0028829125 scopus 로고
    • The minimal gene complement of Mycoplasma genitalium
    • Fraser, C.M. et al. (1995) The minimal gene complement of Mycoplasma genitalium. Science, 270, 397-403.
    • (1995) Science , vol.270 , pp. 397-403
    • Fraser, C.M.1
  • 17
    • 0031470826 scopus 로고    scopus 로고
    • Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi
    • Fraser, C.M. et al. (1997) Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi. Nature, 390, 580-586.
    • (1997) Nature , vol.390 , pp. 580-586
    • Fraser, C.M.1
  • 19
    • 0029059714 scopus 로고
    • Complete sequence and gene organization of the mitochondrial genome of the land snail Albinaria coerulea
    • Hatzoglou, E., Rodakis, G.C. and Lecanidou, R. (1995) Complete sequence and gene organization of the mitochondrial genome of the land snail Albinaria coerulea. Genetics, 140, 1353-1366.
    • (1995) Genetics , vol.140 , pp. 1353-1366
    • Hatzoglou, E.1    Rodakis, G.C.2    Lecanidou, R.3
  • 21
    • 0030606607 scopus 로고    scopus 로고
    • Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions
    • Kaneko, T. et al. (1996) Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions. DNA Res., 3, 109-136.
    • (1996) DNA Res. , vol.3 , pp. 109-136
    • Kaneko, T.1
  • 22
    • 0031458333 scopus 로고    scopus 로고
    • The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus
    • Klenk, H.P. et al. (1997) The complete genome sequence of the hyperthermophilic, sulphate-reducing archaeon Archaeoglobus fulgidus. Nature, 390, 364-370.
    • (1997) Nature , vol.390 , pp. 364-370
    • Klenk, H.P.1
  • 23
    • 0030731108 scopus 로고    scopus 로고
    • The complete genome sequence of the Gram-positive bacterium Bacillus subtills
    • Kunst, F. et al. (1997) The complete genome sequence of the Gram-positive bacterium Bacillus subtills. Nature, 390, 249-256.
    • (1997) Nature , vol.390 , pp. 249-256
    • Kunst, F.1
  • 25
    • 0029161177 scopus 로고
    • Complete sequence of the mitochondrial DNA of the rhodophyte Chondrus crispus (Gigartinales). Gene content and genome organization
    • Leblanc, C., Boyen, C., Richard, O., Bonnard, G., Grienenberger, J.-M. and Kloareg, B. (1995) Complete sequence of the mitochondrial DNA of the rhodophyte Chondrus crispus (Gigartinales). Gene content and genome organization. J. Mol. Biol., 250, 484-495.
    • (1995) J. Mol. Biol. , vol.250 , pp. 484-495
    • Leblanc, C.1    Boyen, C.2    Richard, O.3    Bonnard, G.4    Grienenberger, J.-M.5    Kloareg, B.6
  • 26
    • 0028834126 scopus 로고
    • Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: Early establishment of vertebrate genome organization
    • Lee, W.J. and Kocher, T.D. (1995) Complete sequence of a sea lamprey (Petromyzon marinus) mitochondrial genome: early establishment of vertebrate genome organization. Genetics, 139, 873-887.
    • (1995) Genetics , vol.139 , pp. 873-887
    • Lee, W.J.1    Kocher, T.D.2
  • 27
    • 84956088098 scopus 로고
    • α spectrum in a noncoding DNA sequence
    • α spectrum in a noncoding DNA sequence. Europhys. Lett., 17, 655-660.
    • (1992) Europhys. Lett. , vol.17 , pp. 655-660
    • Li, W.1    Kaneko, K.2
  • 28
    • 0029160870 scopus 로고
    • Complete sequence of maize chloroplast genome: Gene content, hotspots of divergence and fine tuning of genetic information by transcript editing
    • Maier, R.M., Neckermann, K., Igloi, G.L. and Kössel, H. (1995) Complete sequence of maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing. J. Mol. Biol., 251, 614-628.
    • (1995) J. Mol. Biol. , vol.251 , pp. 614-628
    • Maier, R.M.1    Neckermann, K.2    Igloi, G.L.3    Kössel, H.4
  • 29
    • 0026573893 scopus 로고
    • The mitochondnal genomes of two nematodes, Caenorhabditis elegans and Ascaris suum
    • Okimoto, R., Macfarlane, J., Clary, D. and Wolstenholme, D.R. (1992) The mitochondnal genomes of two nematodes, Caenorhabditis elegans and Ascaris suum. Genetics, 130, 471-498.
    • (1992) Genetics , vol.130 , pp. 471-498
    • Okimoto, R.1    Macfarlane, J.2    Clary, D.3    Wolstenholme, D.R.4
  • 30
    • 0030071902 scopus 로고    scopus 로고
    • From DNA sequence to biological function
    • Oliver, S.G. (1996) From DNA sequence to biological function. Nature, 379, 597-600.
    • (1996) Nature , vol.379 , pp. 597-600
    • Oliver, S.G.1
  • 32
    • 0030924281 scopus 로고    scopus 로고
    • The mitochondrion that time forgot
    • Palmer, J.D. (1997) The mitochondrion that time forgot. Nature, 387, 454-455.
    • (1997) Nature , vol.387 , pp. 454-455
    • Palmer, J.D.1
  • 33
    • 0029928715 scopus 로고    scopus 로고
    • The mitochondrial DNA of Allomyces macrogynus: The complete genomic sequence from an ancestral fungus
    • Paquin, B. and Lang, B.F. (1996) The mitochondrial DNA of Allomyces macrogynus: the complete genomic sequence from an ancestral fungus. J. Mol. Biol., 255, 688-701.
    • (1996) J. Mol. Biol. , vol.255 , pp. 688-701
    • Paquin, B.1    Lang, B.F.2
  • 34
    • 0024551941 scopus 로고
    • Probabilistic models of genome shuffling
    • Sankoff, D. and Goldstein, M. (1988) Probabilistic models of genome shuffling. Bull. Math. Biol., 51, 117-124.
    • (1988) Bull. Math. Biol. , vol.51 , pp. 117-124
    • Sankoff, D.1    Goldstein, M.2
  • 35
    • 0026680446 scopus 로고
    • Gene order comparisons for phylogenetic inference: Evolution of the mitochondria genomes
    • Sankoff, D., Leduc, G., Antoine, N., Paquin, B., Lang, F. and Cedergren, R. (1992) Gene order comparisons for phylogenetic inference: evolution of the mitochondria genomes. Proc. Natl Acad. Sci. USA, 89, 6575-6579.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 6575-6579
    • Sankoff, D.1    Leduc, G.2    Antoine, N.3    Paquin, B.4    Lang, F.5    Cedergren, R.6
  • 36
    • 15644383855 scopus 로고    scopus 로고
    • Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: Functional analysis and comparative genomics
    • Smith, D.R. et al. (1997) Complete genome sequence of Methanobacterium thermoautotrophicum ΔH: functional analysis and comparative genomics. J. Bacteriol., 179, 7135-7155.
    • (1997) J. Bacteriol. , vol.179 , pp. 7135-7155
    • Smith, D.R.1
  • 37
    • 0027301017 scopus 로고
    • The phylogeny of echinoderm classes based on mitochondrial gene arrangements
    • Smith, M.J., Arndt, A., Gorski, S. and Fajbar, E. (1993) The phylogeny of echinoderm classes based on mitochondrial gene arrangements. J. Mol. Evol., 36, 545-554.
    • (1993) J. Mol. Evol. , vol.36 , pp. 545-554
    • Smith, M.J.1    Arndt, A.2    Gorski, S.3    Fajbar, E.4
  • 38
    • 0030953242 scopus 로고    scopus 로고
    • Microbial pathogenesis: Genomes and beyond
    • Strauss, E.J. and Falkow, S. (1997) Microbial pathogenesis: genomes and beyond. Science, 276, 707-712.
    • (1997) Science , vol.276 , pp. 707-712
    • Strauss, E.J.1    Falkow, S.2
  • 39
    • 0030835739 scopus 로고    scopus 로고
    • The complete genome sequence of the gastric pathogen Helicobacter pylori
    • Tomb, J.-F. et al. (1997) The complete genome sequence of the gastric pathogen Helicobacter pylori. Nature, 388, 539-547.
    • (1997) Nature , vol.388 , pp. 539-547
    • Tomb, J.-F.1
  • 40
    • 0000204878 scopus 로고
    • Evolution of long-range fractal correlations and 1/f noise in DNA base sequences
    • Voss, R.F. (1992) Evolution of long-range fractal correlations and 1/f noise in DNA base sequences. Phys. Rev. Lett., 68, 3805-3808.
    • (1992) Phys. Rev. Lett. , vol.68 , pp. 3805-3808
    • Voss, R.F.1
  • 42
    • 0030596486 scopus 로고    scopus 로고
    • Short-range order in two eukaryotic genomes: Relation to chromosome structure
    • Widom, J. (1996) Short-range order in two eukaryotic genomes: relation to chromosome structure. J. Mol. Biol., 259, 579-588.
    • (1996) J. Mol. Biol. , vol.259 , pp. 579-588
    • Widom, J.1
  • 43
    • 0028330225 scopus 로고
    • Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome oiganization
    • Wolff, G., Plante, I., Lang, B.F., Kück, U. and Burger, G. (1994) Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome oiganization. J. Mol. Biol., 237, 75-86.
    • (1994) J. Mol. Biol. , vol.237 , pp. 75-86
    • Wolff, G.1    Plante, I.2    Lang, B.F.3    Kück, U.4    Burger, G.5
  • 44
    • 0027083319 scopus 로고
    • Animal mitochondrial DNA: Structure and evolution
    • Wolstenhohne, D.R. (1992) Animal mitochondrial DNA: structure and evolution. Int. Rev. Cytol., 141, 173-216.
    • (1992) Int. Rev. Cytol. , vol.141 , pp. 173-216
    • Wolstenhohne, D.R.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.