Protein-DNA Interactions in Interferon-γ Signaling

Methods

Volumn 15, Issue 3, 1998, Pages 175-188

  Park, Christopher ^a   Schindler, Christian ^a  

^a Och Spine at New York Presbyterian Hospitals   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; DNA BINDING PROTEIN; GAMMA INTERFERON; GAMMA INTERFERON RECEPTOR; STAT1 PROTEIN; STAT2 PROTEIN; STAT3 PROTEIN; STAT4 PROTEIN; STAT5 PROTEIN; TRANSCRIPTION FACTOR;

PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA BINDING; REVIEW; SIGNAL TRANSDUCTION; TRANSCRIPTION REGULATION;

BASE SEQUENCE; DNA-BINDING PROTEINS; ENHANCER ELEMENTS (GENETICS); INTERFERON TYPE II; OLIGODEOXYRIBONUCLEOTIDES; PROTEIN BINDING; SIGNAL TRANSDUCTION; TRANSCRIPTION FACTORS;

EID: 0031696120     PISSN: 10462023     EISSN: 10959130     Source Type: Journal    
DOI: 10.1006/meth.1998.0622     Document Type: Article

References (89)

1. Farrar M.A., and Schreiber R.D. Annu. Rev. Immunol. 11 (1993) 571-611
2. Bach E.A., Aguet M., and Schreiber R.D. Annu. Rev. Immunol. 15 (1997) 563-591
3. Ihle J.N. Cell 84 (1996) 331-334
4. Schindler C., and Darnell J.E. Annu. Rev. Biochem. 64 (1995) 621-651
5. Strehlow I., and Schindler C. Gamma Interferon in Antiviral Defense (1997), R. G. Landes, Austin p. 61-84
6. Boehm U., Klamp T., Groot M., and Howard J.C. Annu. Rev. Immunol. 15 (1997) 749-795
7. Lew D.J., Decker T., Strehlow I., and Darnell J.E. Mol. Cell. Biol. 11 (1991) 182-191
8. Veals S.A., Schindler C., Leonard D., Fu X.-Y., Aebersold R., Darnell J.E., and Levy D.E. Mol. Cell. Biol. 12 (1992) 3315-3324
9. Fu X.-Y., Schindler C., Improta T., Aebersold R., and Darnell J.E. Proc. Natl. Acad. Sci. USA 89 (1992) 7840-7843
10. Darnell J.E. Science 277 (1997) 1630-1635
11. Shuai K., Schindler C., Prezioso V., and Darnell J.E. Science 258 (1992) 1808-1812
12. Schindler C., Fu X.-Y., Improta T., Aebersold R., and Darnell J.E. Proc. Natl. Acad. Sci. USA 89 (1992) 7836-7839
13. Shuai K., Horvarth C.M., Tsai-Huang L.H., Quereshi S.A., Cowburn D., and Darnell J.E. Cell 76 (1994) 821-828
14. Decker T., Kovarik P., and Meinke A. J. Interferon Cytokine Res. 17 (1997) 121-134
15. Xu X., Sun Y.-L., and Hoey T. Science 273 (1996) 794-797
16. Vinkemeier U., Cohen S.L., Moarefi I., Chait B.T., Kuriyan J., and Darnell J.E. EMBO J. 15 (1996) 5616-5626
17. Chung C.D., Liao J., Liu B., Rao X., Jay P., Berta P., and Shuai K. Science 278 (1997) 1803-1805
18. Collum, R. Lee, G. Lee, C. Liu, W. Schindler, C. 1998
19. Zhang J.J., Vinkemeier U., Gu W., Chakravarti D., Horvath C.M., and Darnell J.E. Proc. Natl. Acad. Sci. USA 93 (1996) 15092-15096
20. Horvath C.M., Stark G.R., Kerr I.M., and Darnell J.E. Mol. Cell. Biol. 16 (1996) 6957-6964
21. Martinez-Moczygemba M., Glutch M.J., French D.L., and Reich N.C. J. Biol. Chem. 272 (1997) 23865-23870
22. Yan R., Small S., Desplan C., Dearolf C.R., and Darnell J.E. Cell 84 (1996) 421-430
23. Kawata T., Shevchenko A., Fukuzawa M., Jermyn K.A., Totty N.F., Zhukovskaya N.V., Sterling A.E., Mann M., and Williams J.G. Cell 89 (1997) 909-916
24. Hou X.S., Melnick M.B., and Perrimon N. Cell 84 (1996) 411-419
25. Meraz M.A., White J.M., Sheehan K.C., Bach E.A., Rodig S.J., Dighe A.S., Kaplan D.H., Riley J.K., Greenlund A.C., Campbell D., Carver-Moore K., DuBois R.N., Clark R., Aguet M., and Schreiber R.D. Cell 84 (1996) 431-442
26. Durbin J.E., Hackenmiller R., Simon M.C., and Levy D.E. Cell 84 (1996) 443-450
27. Mach B., Steimle V., Martinez-Soria E., and Reith W. Annu. Rev. Immunol. 14 (1996) 301-313
28. Ruffner H., Reis L.F., Naef D., and Weissmann C. Proc. Natl. Acad. Sci. USA 90 (1993) 11503-11507
29. Kimura T., Nakayama K., Penninger J., Kitagawa M., Harada H., Matsuyama T., Tanaka N., Kamijo R., Vilcek J., Mak T.W., and Taniguchi T. Science 264 (1994) 1921-1924
30. Tamura T., Ishihara M., Lamphier M.S., Tanaka N., Oishi I., Aizawa S., Matsuyama T., Mak T.W., Taki S., and Taniguchi T. Nature 376 (1995) 596-599
31. Mirkovitch J., and Darnell J.E.J. Mol. Cell. Biol. 12 (1992) 1-9
32. Rein T., Müller M., and Zorbas H. Nucleic Acids Res. 22 (1994) 3033-3037
33. Pine R., Canova A., and Schindler C. EMBO J. 13 (1994) 158-167
34. Andreason G.L., and Evans G.A. Biotechniques 6 (1988) 650-660
35. Andreason G.L., and Evans G.A. Anal. Biochem. 180 (1989) 269-275
36. Sambrook J., Fritsch E.F., and Maniatis T. Molecular Cloning: A Laboratory Manual (1989), Cold Spring Harbor Laboratory Press, Cold Spring Harbor
37. Harlow P.P., Hobson G.M., and Benfield P.A. Methods Mol. Biol. 57 (1996) 287-295
38. Hobson G.M., Harlow P.P., and Benfield P.A. Methods Mol. Biol. 57 (1996) 279-285
39. Church G.M., and Gilbert W. Proc. Natl. Acad. Sci. USA 81 (1984) 151-158
40. Huibregste J.M., and Engelke D.R. Gene 44 (1986) 151-158
41. Jackson P.D., and Felsenfeld G. Proc. Natl. Acad. Sci. USA 82 (1985) 2296-3002
42. Mueller P.R., and Salser S.J. Genes Dev. 2 (1988) 412-417
43. Quershi S.A., Salditt-Georgieff M., and Darnell J.E. Proc. Natl. Acad. Sci. USA 92 (1995) 3829-3833
44. Veals S.A., Maria T.S., and Levy D.E. Mol. Cell. Biol. 13 (1993) 196-206
45. Carey M. Cell 92 (1998) 5-8
46. Rothman P., Kreider B., Azam M., Levy D., Wegenka U., Eilers A., Decker T., Horn F., Kashleva H., Ihle J., and Schindler C. Immunity 1 (1994) 457-468
47. Pearse R.N., Feinman R., Shuai K., Darnell J.E., and Ravetch J.V. Proc. Natl. Acad. Sci. USA 90 (1993) 4314-4318
48. Caldenhoven E., Coffer P., Yuan J., Stolpe A.V.D., Horn F., Kruijer W., and Saag P.T.V.D. J. Biol. Chem. 269 (1994) 21146-21154
49. Sims S.H., Cha Y., Romine M.F., Gao P.-Q., Gottlieb K., and Deisseroth A.B. Mol. Cell. Biol. 13 (1993) 690-702
50. Wagner B.J., Hayes T.E., Hoban C.J., and Cochran B.H. EMBO J. 9 (1990) 4477-4484
51. Schindler C., Kashleva H., Pernis A., Pine R., and Rothman P. EMBO J. 13 (1994) 1350-1356
52. Dignam J.D., Lebovitz R.M., and Roeder R.G. Nucleic Acids Res. 11 (1983) 1475-1489
53. Mirkovitch J., and Darnell J.E.J. Genes Dev. 5 (1991) 83-93
54. Andrews N.C., and Faller D.V. Nucleic Acids Res. 19 (1991) 2499
55. Azam M., Erdjument-Bromage H., Kreider B.L., Xia M., Quelle F., Basu R., Saris C., Tempst P., Ihle J.N., and Schindler C. EMBO J. 14 (1995) 1402-1411
56. Yuan J., Wegenka U.M., Lütticken C., Bushmann J., Decker T., Schindler C., Heinrich C., and Horn F. Mol. Cell. Biol. 14 (1994) 1657-1668
57. Kessler D.S., Veals S.A., Fu X.-Y., and Levy D.E. Genes Dev. 4 (1990) 1753-1765
58. Chodosh L.A., Carthew R.W., and Sharp P.A. Mol. Cell. Biol. 6 (1986) 4723-4733
59. Siu G., Wurster A.L., Lipsick J.S., and Hedrick S.M. Mol. Cell. Biol. 12 (1992) 1592
60. Akira S., Nishio Y., Inoue M., Wang X.-J., Wei S., Matsusaka T., Yoshida K., Sudo T., Naruto M., and Kishimoto T. Cell 77 (1994) 63-71
61. Shimoda K., vanDeursen J., Sangster M.Y., Sarawar S.R., Carson R.T., Tripp R.A., Chu C., Quelle F.W., Nosaka T., Vignali D.A., Doherty P.C., Grosveld G., Paul W.E., and Ihle J.N. Nature 380 (1996) 630-633
62. Takeda K., Tanaka T., Shi W., Matsumoto M., Minami M., Kashiwamura S., Nakanishi K., Yoshida N., Kishimoto T., and Akira S. Nature 380 (1996) 627-630
63. Kaplan M.H., Schindler U., Smiley S.T., and Grusby M.J. Immunity 4 (1996) 313-319
64. Thierfelder W.E., vanDeursen J.M., Yamamoto K., Tripp R.A., Sarawar S.R., Carson R.T., Sangster M.Y., Vignali D.A., Doherty P.C., Grosveld G., and Ihle J.N. Nature 382 (1996) 171-174
65. Kaplan M.H., Sun Y.-L., Hoey T., and Grusby M.J. Nature 382 (1996) 174-177
66. Takeda K., Noguchi K., Shi W., Tanaka T., Matsumoto M., Yoshida N., Kishimoto T., and Akira S. Proc. Natl. Acad. Sci. USA 94 (1997)
67. Hilton D.J., Richardson R.T., Alexander W.S., Viney E.M., Wilson T.A., Sprigg N.S., Strr R., Nicholson S.E., Metcalf D., and Nicola N.A. Proc. Natl. Acad. Sci. USA 95 (1998) 114-119
68. Yoshimura A., Ohkubo T., Kiguchi T., Jenkins N.A., Gilbert D.J., Copeland N.G., Hara T., and Miyajima A. EMBO J. 14 (1995) 2816-2826
69. Endo T.A., Masuhara M., Yokouchi M., Suzuki R., Sakamoto H., Mitsui K., Matsumoto A., Tanimura S., Ohtsubo M., Misawa H., Miyazaki T., Leonor N., Taniguchi T., Fujita T., Kanakura Y., Komiya S., and Yoshimura A. Nature 387 (1997) 921-924
70. Naka T., Narazaki M., Hirata M., Matsumoto T., Minamoto S., Aono A., Nishimoto N., Kajita T., Taga T., Yoshizaki K., Akiroa S., and Kishimoto T. Nature 387 (1997) 924-929
71. Starr R., Willison T.A., Viney E.M., Murray L.J., Rayner J.R., Jenkins B.J., Gonda T.J., Alexander W.S., Metcalf D., Nicola N.A., and Hilton D.J. Nature 387 (1997) 917-921
72. Stöcklin E., Wissler M., Gouilleux F., and Groner B. Nature 383 (1996) 726-728
73. Meier V., and Groner B. Mol. Cell. Biol. 14 (1994) 128-137
74. Horvai A.E., Xu L., Korzus E., Brard G., Kalafus D., Mullen T.-M., Rose D.W., Rosenfeld M.G., and Glass C.K. Proc. Natl. Acad. Sci. USA 94 (1997) 1074-1079
75. Pine R. Nucleic Acids Res. 25 (1997) 4346-4354
76. Look D.C., Pelletier M.R., Tidwell R.M., Roswit W.T., and Holtzman M.J. J. Biol. Chem. 270 (1995) 30264-30267
77. Schaefer T.S., Sanders L.K., and Nathans D. Proc. Natl. Acad. Sci. USA 92 (1995) 9097-9101
78. Perez C., Wietzerbin J., and Benech P. Mol. Cell. Biol. 13 (1993) 2182-2192
79. Ohmori Y., and Hamilton T.A. J. Immunol. 154 (1995) 5235-5244
80. Bhattacharya S., Eckner R., Grossman S., Oldread E., Arany Z., D'Andrea A., and Livingston D. Nature 383 (1996) 344-347
81. Khan K.D., Shuai K., Lindwall G., Maher S.E., Darnell J.E., and Bothwell A.L. Proc. Natl. Acad. Sci. USA 90 (1993) 6806-6810
82. Kanno Y., Kozak C.A., Schindler C., Driggers P.H., Ennist D.L., Gleason S.L., Darnell J.E., and Ozato K. Mol. Cell. Biol. 13 (1993) 3951-3963
83. Strehlow I., Seegert D., Frick C., Bange F.C., Schindler C., Boettge E.C., and Decker T. J. Biol. Chem. 268 (1993) 16590-16595
84. Wong P., Severns C.W., Guyer N.B., and Wright T.M. Mol. Cell. Biol. 14 (1994) 914-922
85. Chin Y.E., Kitagawa M., Su W.-C., You Z.-H., Iwamoto Y., and Fu X.-Y. Science 272 (1996) 719-722
86. Horvath C.M., Wen Z., and Darnell J.E. Genes Dev. 9 (1995) 984-994
87. Schindler U., Wu P., Rothe M., Brasseur M., and McKnight S.L. Immunity 2 (1995) 689-697
88. Chen X., Winkemeier U., Zhao Y., Jeruzalmi D., Darnell J.E., and Kuriyan J. Cell 93 (1998) 827-839
89. Teglund S., McKay C., Schuetz E., VanDeursen J.M., Stravopodis D., Wang D., Brown M., Bodner S., Grosveld G., and Ihle J.N. Cell 93 (1998) 841-850