Structure of the acceptor stem of Escherichia coli tRNA(Ala): Role of the G3·U70 base pair in synthetase recognition

Nucleic Acids Research

Volumn 25, Issue 11, 1997, Pages 2083-2090

  Ramos, Andres ^a   Varani, Gabriele ^a  

^a MRC LABORATORY OF MOLECULAR BIOLOGY   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ALANINE; ALANINE TRANSFER RNA; SYNTHETASE;

AMINOACYLATION; ARTICLE; ESCHERICHIA COLI; GENETIC CODE; NONHUMAN; NUCLEAR MAGNETIC RESONANCE; PRIORITY JOURNAL; PROTEIN RNA BINDING; RNA CONFORMATION; RNA STRUCTURE; RNA TRANSLATION;

ALANINE-TRNA LIGASE; ESCHERICHIA COLI; IMAGE PROCESSING, COMPUTER-ASSISTED; MAGNETIC RESONANCE SPECTROSCOPY; MODELS, MOLECULAR; PROTEIN CONFORMATION; PROTEIN STRUCTURE, SECONDARY; RNA, TRANSFER, ALA; STRUCTURE-ACTIVITY RELATIONSHIP; SUBSTRATE SPECIFICITY;

ESCHERICHIA COLI;

EID: 0030845405     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/25.11.2083     Document Type: Article

References (51)

1. Ibba,M., Hong,K.-W., Sherman,J. M., Sever,A. and Söll,D. (1996) Proc. Natl. Acad. Sci. USA, 93, 6953-6958.
2. Saks,M.E. and Sampson,J.R. (1996) EMBO J., 15, 2843-2849.
3. McClain,W.H. (1993) FASEB J., 7, 72-78.
4. McClain,W.H. (1995) In Söll,D. and RajBhandary,U. (eds), tRNA: Structure, Biosynthesis and Function. American Society for Microbiology, Washington, DC.
5. Rould,M.A., Perona,J.J., Söll,D. and Steitz,T.A. (1989) Science, 246, 1135-1142.
6. Ruff,M., Krishnaswamy,S., Boeglin,M., Poterszman,A., Mitschler,A., Podjarny,A., Rees,B., Thierry,J.C. and Moras,D. (1991) Science, 252, 1682-1689.
7. Biou,V., Yaremchuk,A., Tukalo,M. and Cusack,S. (1994) Science, 263, 1404-1410.
8. Goldgur,Y., Mosyak,L., Reshetnikova,L., Ankilova,V., Lavrik,O., Khodyreva,S. and Safro,M. (1997) Structure, 5, 59-68.
9. Cusack,S., Yaremchuk,A. and Tukalo,M. (1996) EMBO J., 15, 6321-6334.
10. Cusack,S., Yaremchuk,A. and Tukalo,M.(1996) EMBO J., 15, 2834-2842.
11. Rould,M.A. Perona,J.J. and Steitz,T.A. (1991) Nature, 352, 213-218.
12. Caverelli,J., Rees,B., Ruff,M., Thierry,J.-C. and Moras,D. (1993) Nature, 362, 181-184.
13. Hou,Y.-M. and P.Schimmel (1988) Nature, 333, 140-145.
14. McClain,W.H. and Foss,K. (1988) Science, 240, 793-796.
15. Gale,A.J., Shi,J.-P. and Schimmel,P. (1996) Biochemistry, 35, 608-615.
16. Imura,N., Weiss,G.B. and Chambers,R.W. (1969) Nature, 222, 1147-1148.
17. Francklyn,C. and Schimmel,P. (1989) Nature, 337, 478-481.
18. Francklyn,C., Shi,J.-P. and Schimmel,P. (1992) Science, 255, 1121-1125.
19. Musier-Forsyth,K., Shi,J.-P. Henderson,B., Bald,R., Fürste,J.P., Erdmann,V.A. and Schimmel,P. (1995) J. Am. Chem. Soc., 117, 7253-7254.
20. Doudna,J.A., Cormack,B.P. and Szostak,J.W. (1989) Proc. Natl. Acad. Sci. USA, 86, 7402-7406.
21. Abramovitz,D.L., Friedman,R.A. Pyle,A.M. (1996) Science, 271, 1410-1413.
22. Perrotta,A.T. and Been,M.D. (1996) Nucleic Acids Res., 24, 1314-1321.
23. Musier-Forsyth,K., Usman,N., Scaringe,S., Doudna,J.A., Green,R. and Schimmel,P. (1991) Science, 253, 784-786.
24. Schimmel,P., Musier-Forsyth,K., Ibba,M. and Söll,D. (1996) Nature, 384, 422.
25. McClain,W.H., Chen,Y.-M., Foss,K. and Schneider,J. (1988) Science, 242, 1681-1684.
26. Gabriel,K., Schneider,J. and McClain,W.H. (1996) Science, 271, 195-197.
27. Limmer,S., Reif,B., Ott,G., Arnold,L. and Sprinzl,M. (1996) FEBS Lett., 385, 15-20.
28. Limmer,S., Hofmann,H.-P., Ott,G. and Sprinzl,M. (1993) Proc. Natl. Acad. Sci. USA, 90, 6199-6202.
29. Varani,G., Aboul-ela,F. and Allain,F.H.-T. (1996) Prog. NMR Spectrosc., 29, 51-127.
30. Batey,R.T., Battiste,J.L. and Williamson,J.R. (1995) Methods Enzymol., 261, 300-322.
31. Allain,F.H.-T. and Varani,G. (1995) Nucleic Acids Res., 23, 341-350.
32. Allain,F.H.-T. and Varani,G. (1995) J. Mol. Biol., 250, 333-353.
33. Aboul-ela,F., Karn,J. and Varani,G. (1995) J. Mol. Biol., 253, 313-332.
34. Varani,G., Aboul-ela,F., Allain,F.H.-T. and C.C. Gubser (1995) J. Biomol. NMR, 5, 315-320.
35. Brünger,A.T. (1990) X-PLOR Manual. Yale University Press, New Haven, CT.
36. Avis,J., Allain,F.H.-T., Howe,P.W.A., Varani,G., Neuhaus,D. and Nagai,K. (1996) J. Mol. Biol., 257, 398-411.
37. Diamond,R. (1995) Acta Crystallogr., D51, 127-135.
38. Babcock,M.S., Pednault,E.P.D. and Olson,W.K. (1993) J. Biomol. Struct. Dyn., 11, 597-628.
39. Allain,F.H.-T. and Varani,G. (1997) J. Mol. Biol., 267, 338-351.
40. Moras,D., Dumas,P. and Westhof,E. (1986) van Knippenberg,P.H. and Hilbers,C.W. (eds), In Structure and Dynamics of RNA. Plenum Press, New York, NY.
41. Wang,Y.-X., Huang,S. and Draper,D.E. (1996) Nucleic Acids Res., 24, 2666-2672.
42. Lietzke,S.E., Barnes,C.L., Berglund,J.A. and Kundrot,C.E. (1996) Structure, 4, 917-930.
43. Wu,M. and Turner,D.H. (1996) Biochemistry, 35, 9677-9689.
44. Ladner,J.E., Jack,A., Robertus,J.D., Brown,R.S., Rhodes,D., Clark,B.F.C. and Klug,A. (1975) Proc. Natl. Acad. Sci. USA, 72, 4414-4418.
45. Viani Puglisi,E., Puglisi,J.D., Williamson,J.R. and RajBhandary,U.L. (1994) Proc. Natl. Acad. Sci. USA, 91, 11467-11471.
46. Musier-Forsyth,K. and Schimmel,P. (1992) Nature, 357, 513-515.
47. Ott,G., Arnold,L. and Limmer,S. (1993) Nucleic Acids Res., 21, 5859-5864.
48. Cate,J.H. and Doudna,J.A. (1996) Structure, 4, 1221-1229.
49. Park,S.J., Hou,Y.-M. and Schimmel,P. (1989) Biochemistry, 28, 2740-2746.
50. Lee,C.P., Mandal,N., Dyson,M.R. and RajBhandary,U.L. (1993) Proc. Natl. Acad. Sci. USA, 90, 7149-7152.
51. Liu,H., Yap,L.-P. and Musier-Forsyth,K. (1996) J. Am. Chem. Soc., 118, 2523-2524.