-
1
-
-
0016990971
-
The origin and evolution of protein superfamilies
-
Dayhoff MO: The origin and evolution of protein superfamilies. Fed Proc 1976, 35:2132-2138
-
(1976)
Fed. Proc.
, vol.35
, pp. 2132-2138
-
-
Dayhoff, M.O.1
-
2
-
-
0006378890
-
Gene evolution and the haemoglobins
-
Ingram VM: Gene evolution and the haemoglobins. Nature 1961, 189:704-708
-
(1961)
Nature
, vol.189
, pp. 704-708
-
-
Ingram, V.M.1
-
3
-
-
0003432370
-
The causes of evolution
-
New York and London: Harper & Brothers Publishers
-
Haldane JBS: The causes of evolution. New York and London: Harper & Brothers Publishers; 1932
-
(1932)
-
-
Haldane, J.B.S.1
-
4
-
-
0003515251
-
Evolution by gene duplication
-
New York: Springer-Verlag
-
Ohno S: Evolution by gene duplication. New York: Springer-Verlag; 1970
-
(1970)
-
-
Ohno, S.1
-
5
-
-
0032229196
-
Sources of systematic error in functional annotation of genomes: Domain rearrangement, nonorthologous gene displacement and operon disruption
-
Galperin MY, Koonin EV: Sources of systematic error in functional annotation of genomes: domain rearrangement, nonorthologous gene displacement and operon disruption. In Silico Biol 1998, 1:55-67
-
(1998)
In Silico Biol.
, vol.1
, pp. 55-67
-
-
Galperin, M.Y.1
Koonin, E.V.2
-
6
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol 1990, 215:403-410
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
7
-
-
0025272240
-
Rapid and sensitive sequence comparison with FASTP and FASTA
-
Pearson WR: Rapid and sensitive sequence comparison with FASTP and FASTA. Methods Enzymol 1990, 183:63-98
-
(1990)
Methods Enzymol.
, vol.183
, pp. 63-98
-
-
Pearson, W.R.1
-
8
-
-
0033976458
-
The Pfam protein families database
-
Bateman A, Birney E, Durbin R, Eddy SR, Howe KL, Sonnhammer EL: The Pfam protein families database. Nucleic Acids Res 2000, 28:263-266
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 263-266
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Howe, K.L.5
Sonnhammer, E.L.6
-
9
-
-
0031976258
-
Phylogenomics: Improving functional predictions for uncharacterized genes by evolutionary analysis
-
Eisen JA: Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. Genome Res 1998, 8:163-167
-
(1998)
Genome Res.
, vol.8
, pp. 163-167
-
-
Eisen, J.A.1
-
10
-
-
0035162592
-
The COG database: New developments in phylogenetic classification of proteins from complete genomes
-
Tatusov RL, Natale DA, Garkavtsev IV, Tatusova TA, Shankavaram UT, Rao BS, Kiryutin B, Galperin MY, Fedorova ND, Koonin EV: The COG database: new developments in phylogenetic classification of proteins from complete genomes. Nucleic Acids Res 2001, 29:22-28
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 22-28
-
-
Tatusov, R.L.1
Natale, D.A.2
Garkavtsev, I.V.3
Tatusova, T.A.4
Shankavaram, U.T.5
Rao, B.S.6
Kiryutin, B.7
Galperin, M.Y.8
Fedorova, N.D.9
Koonin, E.V.10
-
11
-
-
33749579169
-
Vorhersage von Genduplikationen und deren Entwicklung in der Evolution
-
Eulenstein O: Vorhersage von Genduplikationen und deren Entwicklung in der Evolution. GMD Research Series 1998, 20:
-
(1998)
GMD Research Series
, vol.20
-
-
Eulenstein, O.1
-
12
-
-
0030762443
-
On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies
-
Zhang L: On a Mirkin-Muchnik-Smith conjecture for comparing molecular phylogenies. J Comput Biol 1997, 4:177-187
-
(1997)
J. Comput. Biol.
, vol.4
, pp. 177-187
-
-
Zhang, L.1
-
13
-
-
0034791426
-
A simple algorithm to infer gene duplication and speciation events on a gene tree
-
Zmasek CM, Eddy SR: A simple algorithm to infer gene duplication and speciation events on a gene tree. Bioinformatics 2001, 17:821-828
-
(2001)
Bioinformatics
, vol.17
, pp. 821-828
-
-
Zmasek, C.M.1
Eddy, S.R.2
-
14
-
-
0020365293
-
Estimation and interpretation of genetic distance in empirical studies
-
Mueller LD, Ayala FJ: Estimation and interpretation of genetic distance in empirical studies. Genet Res 1982, 40:127-137
-
(1982)
Genet. Res.
, vol.40
, pp. 127-137
-
-
Mueller, L.D.1
Ayala, F.J.2
-
15
-
-
0000461280
-
Confidence limits on phylogenies: An approach using the bootstrap
-
Felsenstein J: Confidence limits on phylogenies: An approach using the bootstrap. Evolution 1985, 39:783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
16
-
-
0034649566
-
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
-
Arabidopsis-Initiative
-
Arabidopsis-Initiative: Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature 2000, 408:796-815
-
(2000)
Nature
, vol.408
, pp. 796-815
-
-
-
17
-
-
0032509302
-
Genome sequence of the nematode C. elegans: A platform for investigating biology
-
C. elegans-Sequencing-Consortium
-
C. elegans-Sequencing-Consortium: Genome sequence of the nematode C. elegans: a platform for investigating biology. Science 1998, 282:2012-2018
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
-
18
-
-
0014800108
-
Distinguishing homologous from analogous proteins
-
Fitch WM: Distinguishing homologous from analogous proteins. Syst Zool 1970, 19:99-113
-
(1970)
Syst. Zool.
, vol.19
, pp. 99-113
-
-
Fitch, W.M.1
-
19
-
-
0033595696
-
Seven-transmembrane proteins as odorant and chemosensory receptors
-
Mombaerts P: Seven-transmembrane proteins as odorant and chemosensory receptors. Science 1999, 286:707-711
-
(1999)
Science
, vol.286
, pp. 707-711
-
-
Mombaerts, P.1
-
20
-
-
0033486229
-
Chemosensory signaling in C. elegans
-
Troemel ER: Chemosensory signaling in C. elegans. Bioessays 1999, 21:1011-1020
-
(1999)
Bioessays
, vol.21
, pp. 1011-1020
-
-
Troemel, E.R.1
-
21
-
-
0031743421
-
Profile hidden Markov models
-
Eddy SR: Profile hidden Markov models. Bioinformatics 1998, 14:755-763
-
(1998)
Bioinformatics
, vol.14
, pp. 755-763
-
-
Eddy, S.R.1
-
22
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou N, Nei M: The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 1987, 4:406-425
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
23
-
-
0024114801
-
A note on the neighbor-joining algorithm of Saitou and Nei
-
Studier JA, Keppler KJ: A note on the neighbor-joining algorithm of Saitou and Nei. Mol Biol Evol 1988, 5:729-731
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 729-731
-
-
Studier, J.A.1
Keppler, K.J.2
-
24
-
-
0000540861
-
The performance of the neighbor-joining method of phylogeny reconstruction
-
(Edited by: Mirkin B, McMorris F, Roberts F, Rzhetsky A) American Mathematical Society
-
Atteson K: The performance of the neighbor-joining method of phylogeny reconstruction. In: Mathematical Hierarchies and Biology (Edited by: Mirkin B, McMorris F, Roberts F, Rzhetsky A) American Mathematical Society 1997, 133-148
-
(1997)
Mathematical Hierarchies and Biology
, pp. 133-148
-
-
Atteson, K.1
-
26
-
-
0000228203
-
A model of evolutionary change in proteins
-
(Edited by: Silver Springs, MD) Natl Biomed Res Found
-
Dayhoff MO, Schwartz RM, Orcutt BC: A model of evolutionary change in proteins. In: Atlas of Protein Sequence and Structure (Edited by: Silver Springs, MD) Natl Biomed Res Found 1978, 5:345-352
-
(1978)
Atlas of Protein Sequence and Structure
, vol.5
, pp. 345-352
-
-
Dayhoff, M.O.1
Schwartz, R.M.2
Orcutt, B.C.3
-
27
-
-
0001336205
-
Phylogenetic Inference
-
(Edited by: Hillis DM, Moritz C, Mable BK. Sunderland, MA) Sinauer Associates
-
Swofford DL, Olsen GJ, Waddell PJ, Hillis DM: Phylogenetic Inference. In: Molecular systematics (Edited by: Hillis DM, Moritz C, Mable BK. Sunderland, MA) Sinauer Associates 1996
-
(1996)
Molecular Systematics
-
-
Swofford, D.L.1
Olsen, G.J.2
Waddell, P.J.3
Hillis, D.M.4
-
28
-
-
0000365320
-
Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences
-
Goodman M, Czelusniak J, Moore GW, Romero-Herrera AE, Matsuda G: Fitting the gene lineage into its species lineage, a parsimony strategy illustrated by cladograms constructed from globin sequences. Syst Zool 1979, 28:132-168
-
(1979)
Syst. Zool.
, vol.28
, pp. 132-168
-
-
Goodman, M.1
Czelusniak, J.2
Moore, G.W.3
Romero-Herrera, A.E.4
Matsuda, G.5
-
29
-
-
0031010579
-
Evidence for a clade of nematodes, arthropods and other moulting animals
-
Aguinaldo AM, Turbeville JM, Linford LS, Rivera MC, Garey JR, Raff RA, Lake JA: Evidence for a clade of nematodes, arthropods and other moulting animals. Nature 1997, 387:489-493
-
(1997)
Nature
, vol.387
, pp. 489-493
-
-
Aguinaldo, A.M.1
Turbeville, J.M.2
Linford, L.S.3
Rivera, M.C.4
Garey, J.R.5
Raff, R.A.6
Lake, J.A.7
-
30
-
-
0029832927
-
Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences
-
Barns SM, Delwiche CF, Palmer JD, Pace NR: Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences. Proc Natl Acad Sci U S A 1996, 93:9188-9193
-
(1996)
Proc. Natl. Acad. Sci. U. S. A.
, vol.93
, pp. 9188-9193
-
-
Barns, S.M.1
Delwiche, C.F.2
Palmer, J.D.3
Pace, N.R.4
-
31
-
-
0031737687
-
Metazoan phylogenies: Falling into place or falling to pieces? A palaeontological perspective
-
Morris SC: Metazoan phylogenies: falling into place or falling to pieces? A palaeontological perspective. Curr Opin Genet Dev 1998, 8:662-667
-
(1998)
Curr. Opin. Genet. Dev.
, vol.8
, pp. 662-667
-
-
Morris, S.C.1
-
32
-
-
0033600273
-
Hox genes in brachiopods and priapulids and protostome evolution
-
de Rosa R, Grenier JK, Andreeva T, Cook CE, Adoutte A, Akam M, Carroll SB, Balavoine G: Hox genes in brachiopods and priapulids and protostome evolution. Nature 1999, 399:772-776
-
(1999)
Nature
, vol.399
, pp. 772-776
-
-
de Rosa, R.1
Grenier, J.K.2
Andreeva, T.3
Cook, C.E.4
Adoutte, A.5
Akam, M.6
Carroll, S.B.7
Balavoine, G.8
-
33
-
-
0035025126
-
ATV: Display and manipulation of annotated phylogenetic trees
-
Zmasek CM, Eddy SR: ATV: display and manipulation of annotated phylogenetic trees. Bioinformatics 2001, 17:383-384
-
(2001)
Bioinformatics
, vol.17
, pp. 383-384
-
-
Zmasek, C.M.1
Eddy, S.R.2
-
34
-
-
0029836454
-
Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies
-
Strimmer K, von Haeseler A: Quartet puzzling: A quartet maximum likelihood method for reconstructing tree topologies. Mol Biol Evol 1996, 13:964-969
-
(1996)
Mol. Biol. Evol.
, vol.13
, pp. 964-969
-
-
Strimmer, K.1
von Haeseler, A.2
-
35
-
-
0000122573
-
PHYLIP - Phylogeny Inference Package
-
Felsenstein J: PHYLIP - Phylogeny Inference Package. Cladistics 1989, 5:164-166
-
(1989)
Cladistics
, vol.5
, pp. 164-166
-
-
Felsenstein, J.1
-
36
-
-
0033957834
-
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
-
Bairoch A, Apweiler R: The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res 2000, 28:45-48
-
(2000)
Nucleic Acids Res.
, vol.28
, pp. 45-48
-
-
Bairoch, A.1
Apweiler, R.2
-
37
-
-
0001527015
-
D L-lactic acid dehydrogenase in Lactobacillus plantarum
-
Dennis D, Kaplan NO: D and L-lactic acid dehydrogenase in Lactobacillus plantarum. J. Biol. Chem. 1960, 235:810-818
-
(1960)
J. Biol. Chem.
, vol.235
, pp. 810-818
-
-
Dennis, D.1
Kaplan, N.O.2
-
38
-
-
77956935111
-
Malate dehydrogenase
-
(Edited by: Boyer PD) New York: Academic Press
-
Banaszak LJ, Bradshaw RA: Malate dehydrogenase. In: The Enzymes (Edited by: Boyer PD) New York: Academic Press 1975, 11:369-396
-
(1975)
The Enzymes
, vol.11
, pp. 369-396
-
-
Banaszak, L.J.1
Bradshaw, R.A.2
-
39
-
-
0015235060
-
NADP-malate dehydrogenase: Photoactivation in leaves of plants with Calvin cycle photosynthesis
-
Johnson HS: NADP-malate dehydrogenase: photoactivation in leaves of plants with Calvin cycle photosynthesis. Biochem. Biophys. Res. Commun. 1971, 43:703-709
-
(1971)
Biochem. Biophys. Res. Commun.
, vol.43
, pp. 703-709
-
-
Johnson, H.S.1
-
40
-
-
0003450992
-
Enzyme nomenclature
-
San Diego: Academic Press
-
Webb EC: Enzyme nomenclature. San Diego: Academic Press 1992
-
(1992)
-
-
Webb, E.C.1
-
41
-
-
0027183518
-
The Alcaligenes eutrophus ldh structural gene encodes a novel type of lactate dehydrogenase
-
Jendrossek D, Kratzin HD, Steinbuchel A: The Alcaligenes eutrophus ldh structural gene encodes a novel type of lactate dehydrogenase. FEMS Microbiol Lett 1993, 112:229-235
-
(1993)
FEMS Microbiol. Lett.
, vol.112
, pp. 229-235
-
-
Jendrossek, D.1
Kratzin, H.D.2
Steinbuchel, A.3
-
42
-
-
0018496854
-
Enzymic synthesis of lignin precursors. Further studies on cinnamyl-alcohol dehydrogenase from soybean-cell-suspension cultures
-
Wyrambik D, Grisebach H: Enzymic synthesis of lignin precursors. Further studies on cinnamyl-alcohol dehydrogenase from soybean-cell-suspension cultures. Eur. J. Biochem. 1979, 97:503-509
-
(1979)
Eur. J. Biochem.
, vol.97
, pp. 503-509
-
-
Wyrambik, D.1
Grisebach, H.2
-
43
-
-
0024654435
-
Nucleotide sequence, organization, and nature of the protein products of the carotenoid biosynthesis gene cluster of Rhodobacter capsulatus
-
Armstrong GA, Alberti M, Leach F, Hearst JE: Nucleotide sequence, organization, and nature of the protein products of the carotenoid biosynthesis gene cluster of Rhodobacter capsulatus. Mol Gen Genet 1989, 216:254-268
-
(1989)
Mol. Gen. Genet.
, vol.216
, pp. 254-268
-
-
Armstrong, G.A.1
Alberti, M.2
Leach, F.3
Hearst, J.E.4
-
44
-
-
0036173130
-
Automated ortholog inference from phylogenetic trees and calculation of orthology reliability
-
Storm CE, Sonnhammer ELL: Automated ortholog inference from phylogenetic trees and calculation of orthology reliability. Bioinformatics 2002, 18:92-99
-
(2002)
Bioinformatics
, vol.18
, pp. 92-99
-
-
Storm, C.E.1
Sonnhammer, E.L.L.2
-
45
-
-
0035861990
-
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
-
Remm M, Storm CE, Sonnhammer ELL: Automatic clustering of orthologs and in-paralogs from pairwise species comparisons. J Mol Biol 2001, 314:1041-1052
-
(2001)
J. Mol. Biol.
, vol.314
, pp. 1041-1052
-
-
Remm, M.1
Storm, C.E.2
Sonnhammer, E.L.L.3
-
46
-
-
0022102222
-
Evolution of the proteases of blood coagulation and fibrinolysis by assembly from modules
-
Patthy L: Evolution of the proteases of blood coagulation and fibrinolysis by assembly from modules. Cell 1985, 41:657-663
-
(1985)
Cell
, vol.41
, pp. 657-663
-
-
Patthy, L.1
-
47
-
-
0022003075
-
The genealogy of some recently evolved vertebrate proteins
-
Doolittle RF: The genealogy of some recently evolved vertebrate proteins. Trends Biochem Sci 1985, 10:233-237
-
(1985)
Trends Biochem. Sci.
, vol.10
, pp. 233-237
-
-
Doolittle, R.F.1
-
48
-
-
0034887203
-
Creating the gene ontology resource: Design and implementation
-
Gene Ontology Consortium
-
Gene Ontology Consortium: Creating the gene ontology resource: design and implementation. Genome Res 2001, 11:1425-1433
-
(2001)
Genome Res.
, vol.11
, pp. 1425-1433
-
-
-
49
-
-
0034747024
-
YPD, PombePD and Worm-PD: Model organism volumes of the BioKnowledge library, an integrated resource for protein information
-
Costanzo MC, Crawford ME, Hirschman JE, Kranz JE, Olsen P, Robertson LS, Skrzypek MS, Braun BR, Hopkins KL, Kondu P, Lengieza C, Lew-Smith JE, Tillberg M, Garrels JI: YPD, PombePD and Worm-PD: model organism volumes of the BioKnowledge library, an integrated resource for protein information. Nucleic Acids Res 2001, 29:75-79
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 75-79
-
-
Costanzo, M.C.1
Crawford, M.E.2
Hirschman, J.E.3
Kranz, J.E.4
Olsen, P.5
Robertson, L.S.6
Skrzypek, M.S.7
Braun, B.R.8
Hopkins, K.L.9
Kondu, P.10
Lengieza, C.11
Lew-Smith, J.E.12
Tillberg, M.13
Garrels, J.I.14
|