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Volumn 53, Issue 3-4, 2004, Pages 367-388

Molecular evolution of some selected benthic foraminifera as inferred from sequences of the small subunit ribosomal DNA

Author keywords

buliminids; molecular phylogeny; ribosomal RNA; RNA secondary structure; rotaliids

Indexed keywords

BENTHIC FORAMINIFERA; EVOLUTION; PHYLOGENY; RNA;

EID: 9644301009     PISSN: 03778398     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.marmicro.2004.08.001     Document Type: Article
Times cited : (40)

References (61)
  • 1
    • 0348011481 scopus 로고    scopus 로고
    • Revised small subunit rRNA analysis provides further evidence that foraminifera are related to Cercozoa
    • C. Berney, and J. Pawlowski Revised small subunit rRNA analysis provides further evidence that foraminifera are related to Cercozoa J. Mol. Evol. 57 2003 1 8
    • (2003) J. Mol. Evol. , vol.57 , pp. 1-8
    • Berney, C.1    Pawlowski, J.2
  • 2
    • 0036892660 scopus 로고    scopus 로고
    • Unusually expanded SSU ribosomal DNA of primary osmotrophic euglenids: Molecular evolution and phylogenetic inference
    • I. Busse, and A. Preisfeld Unusually expanded SSU ribosomal DNA of primary osmotrophic euglenids: molecular evolution and phylogenetic inference J. Mol. Evol. 55 2002 757 767
    • (2002) J. Mol. Evol. , vol.55 , pp. 757-767
    • Busse, I.1    Preisfeld, A.2
  • 3
    • 0022220374 scopus 로고
    • Microhabitats of benthic foraminifera within deep-sea sediments
    • B.H. Corliss Microhabitats of benthic foraminifera within deep-sea sediments Nature 314 1985 435 438
    • (1985) Nature , vol.314 , pp. 435-438
    • Corliss, B.H.1
  • 4
    • 0030336348 scopus 로고    scopus 로고
    • Crayfish molecular systematics: Using a combination of procedures to estimate phylogeny
    • K.A. Crandall, and J.J.F. Fitzpatrick Crayfish molecular systematics: using a combination of procedures to estimate phylogeny Syst. Biol. 45 1996 1 26
    • (1996) Syst. Biol. , vol.45 , pp. 1-26
    • Crandall, K.A.1    Fitzpatrick, J.J.F.2
  • 5
    • 0026306756 scopus 로고
    • Early Cambrian foraminifera from West Africa
    • S.J. Culver Early Cambrian foraminifera from West Africa Science 254 1991 689 691
    • (1991) Science , vol.254 , pp. 689-691
    • Culver, S.J.1
  • 6
    • 0033944805 scopus 로고    scopus 로고
    • Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array
    • C.O. Cunningham, H. Aliesky, and C.M. Collins Sequence and secondary structure variation in the Gyrodactylus (Platyhelminthes: Monogenea) ribosomal RNA gene array J. Parasitol. 86 2000 567 576
    • (2000) J. Parasitol. , vol.86 , pp. 567-576
    • Cunningham, C.O.1    Aliesky, H.2    Collins, C.M.3
  • 7
    • 0030620859 scopus 로고    scopus 로고
    • Planktic foraminiferal molecular evolution and their polyphyletic origins from benthic taxa
    • K.F. Darling, C.M. Wade, D. Kroon, and A.J. Leigh Brown Planktic foraminiferal molecular evolution and their polyphyletic origins from benthic taxa Mar. Micropaleontol. 30 1997 251 266
    • (1997) Mar. Micropaleontol. , vol.30 , pp. 251-266
    • Darling, K.F.1    Wade, C.M.2    Kroon, D.3    Leigh Brown, A.J.4
  • 8
    • 0032987239 scopus 로고    scopus 로고
    • The diversity and distribution of modern planktic foraminiferal small subunit ribosomal RNA genotypes and their potential as tracers of present and past ocean circulations
    • K.F. Darling, C.M. Wade, D. Kroon, A.J. Leigh Brown, and J. Bijma The diversity and distribution of modern planktic foraminiferal small subunit ribosomal RNA genotypes and their potential as tracers of present and past ocean circulations Paleoceanography 14 1999 3 12
    • (1999) Paleoceanography , vol.14 , pp. 3-12
    • Darling, K.F.1    Wade, C.M.2    Kroon, D.3    Leigh Brown, A.J.4    Bijma, J.5
  • 9
    • 0030760563 scopus 로고    scopus 로고
    • Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to fossil record
    • C. De Vargas, L. Zaninetti, H. Hilbrecht, and J. Pawlowski Phylogeny and rates of molecular evolution of planktonic foraminifera: SSU rDNA sequences compared to fossil record J. Mol. Evol. 45 1997 285 294
    • (1997) J. Mol. Evol. , vol.45 , pp. 285-294
    • De Vargas, C.1    Zaninetti, L.2    Hilbrecht, H.3    Pawlowski, J.4
  • 10
    • 0032980049 scopus 로고    scopus 로고
    • Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces
    • C. De Vargas, R. Norris, L. Zaninetti, W.G. Stuart, and J. Pawlowski Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces Proc. Natl. Acad. Sci. 96 1999 2864 2868
    • (1999) Proc. Natl. Acad. Sci. , vol.96 , pp. 2864-2868
    • De Vargas, C.1    Norris, R.2    Zaninetti, L.3    Stuart, W.G.4    Pawlowski, J.5
  • 11
    • 0027500136 scopus 로고
    • Ribosomal RNA secondary structure: Compensatory mutations and implications for phylogenetic analysis
    • M.T. Dixon, and D.M. Hillis Ribosomal RNA secondary structure: compensatory mutations and implications for phylogenetic analysis Mol. Biol. Evol. 10 1993 256 267
    • (1993) Mol. Biol. Evol. , vol.10 , pp. 256-267
    • Dixon, M.T.1    Hillis, D.M.2
  • 14
    • 0031744413 scopus 로고    scopus 로고
    • Comparison of the large subunit ribosomal DNA of Neospora and Toxoplasma and development of a new genetic marker for their differentiation based on the D2 domain
    • J.T. Ellis, G. Amoyal, C. Ryce, P.A. Harper, K.A. Clough, W.L. Homan, and P.J. Brindley Comparison of the large subunit ribosomal DNA of Neospora and Toxoplasma and development of a new genetic marker for their differentiation based on the D2 domain Mol. Cell. Probes. 12 1998 1 13
    • (1998) Mol. Cell. Probes. , vol.12 , pp. 1-13
    • Ellis, J.T.1    Amoyal, G.2    Ryce, C.3    Harper, P.A.4    Clough, K.A.5    Homan, W.L.6    Brindley, P.J.7
  • 15
    • 0034351396 scopus 로고    scopus 로고
    • Multiple data sets, congruence and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata Phrynosomatidae)
    • O. Flores-Villela, K.M. Kjer, M. Benabib, and J.W. Sites Multiple data sets, congruence and hypothesis testing for the phylogeny of basal groups of the lizard genus Sceloporus (Squamata Phrynosomatidae) Syst. Biol. 49 2000 713 739
    • (2000) Syst. Biol. , vol.49 , pp. 713-739
    • Flores-Villela, O.1    Kjer, K.M.2    Benabib, M.3    Sites, J.W.4
  • 16
    • 0036123058 scopus 로고    scopus 로고
    • Live benthic foraminiferal faunas from the Bay of Biscay: Faunal density, composition and microhabitats
    • C. Fontanier, F.J. Jorissen, L. Licari, A. Alexandre, P. Anschutz, and P. Carbonel Live benthic foraminiferal faunas from the Bay of Biscay: faunal density, composition and microhabitats Deep-Sea Res. 49 2002 751 785
    • (2002) Deep-Sea Res. , vol.49 , pp. 751-785
    • Fontanier, C.1    Jorissen, F.J.2    Licari, L.3    Alexandre, A.4    Anschutz, P.5    Carbonel, P.6
  • 17
    • 0024039669 scopus 로고
    • Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster
    • J.M. Hancock, D. Tautz, and G.A. Dover Evolution of the secondary structures and compensatory mutations of the ribosomal RNAs of Drosophila melanogaster Mol. Biol. Evol. 5 1988 393 414
    • (1988) Mol. Biol. Evol. , vol.5 , pp. 393-414
    • Hancock, J.M.1    Tautz, D.2    Dover, G.A.3
  • 18
    • 0027044037 scopus 로고
    • A revision and classification of the Discorbidae, Rosalinidae and Rotaliidae
    • H.J. Hansen, and S.A. Revets A revision and classification of the Discorbidae, Rosalinidae and Rotaliidae J. Foraminiferal Res. 22 1992 166 180
    • (1992) J. Foraminiferal Res. , vol.22 , pp. 166-180
    • Hansen, H.J.1    Revets, S.A.2
  • 19
    • 0025664532 scopus 로고
    • The classification of the foraminifera-a review of historical and philosophical perspectives
    • J.R. Haynes The classification of the foraminifera-a review of historical and philosophical perspectives Palaeontology 33 1990 503 528
    • (1990) Palaeontology , vol.33 , pp. 503-528
    • Haynes, J.R.1
  • 21
    • 0034043777 scopus 로고    scopus 로고
    • The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence
    • R.E. Hickson, C. Simon, and S.W. Rerrey The performance of several multiple-sequence alignment programs in relation to secondary-structure features for an rRNA sequence Mol. Biol. Evol. 17 2000 530 539
    • (2000) Mol. Biol. Evol. , vol.17 , pp. 530-539
    • Hickson, R.E.1    Simon, C.2    Rerrey, S.W.3
  • 22
    • 0031287399 scopus 로고    scopus 로고
    • Molecular, morphological and ecological evidence for species in Ammonia (Foraminifera)
    • M. Holzmann, and J. Pawlowski Molecular, morphological and ecological evidence for species in Ammonia (Foraminifera) J. Foraminiferal Res. 27 1996 311 318
    • (1996) J. Foraminiferal Res. , vol.27 , pp. 311-318
    • Holzmann, M.1    Pawlowski, J.2
  • 24
    • 0942289697 scopus 로고    scopus 로고
    • Molecular data reveal parallel evolution in nummulitid foraminifera
    • M. Holzmann, J. Hohenegger, and J. Pawlowski Molecular data reveal parallel evolution in nummulitid foraminifera J. Foraminiferal Res. 33 2003 8 15
    • (2003) J. Foraminiferal Res. , vol.33 , pp. 8-15
    • Holzmann, M.1    Hohenegger, J.2    Pawlowski, J.3
  • 25
    • 0035861456 scopus 로고    scopus 로고
    • Bayesian inference of phylogeny and its impact on evolutionary biology
    • J.P. Huelsenbeck, F. Ronquist, R. Nielsen, and J.P. Bollback Bayesian inference of phylogeny and its impact on evolutionary biology Science 294 2001 2310 2314
    • (2001) Science , vol.294 , pp. 2310-2314
    • Huelsenbeck, J.P.1    Ronquist, F.2    Nielsen, R.3    Bollback, J.P.4
  • 26
    • 0034113380 scopus 로고    scopus 로고
    • Secondary structural and phylogenetic implications of nuclear large subunit ribosomal RNA in the ectomycorrhizal fungus Tricholoma matsutake
    • S.K. Hwang, and J.G. Kim Secondary structural and phylogenetic implications of nuclear large subunit ribosomal RNA in the ectomycorrhizal fungus Tricholoma matsutake Curr. Microbiol. 40 2000 250 256
    • (2000) Curr. Microbiol. , vol.40 , pp. 250-256
    • Hwang, S.K.1    Kim, J.G.2
  • 28
    • 0034903594 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa are related in actin phylogeny: Two orphans find a home?
    • P.J. Keeling Foraminifera and Cercozoa are related in actin phylogeny: two orphans find a home? Mol. Biol. Evol. 18 2001 1551 1557
    • (2001) Mol. Biol. Evol. , vol.18 , pp. 1551-1557
    • Keeling, P.J.1
  • 29
    • 0029365329 scopus 로고
    • Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: An example of alignment and data presentation from the frogs
    • K.M. Kjer Use of rRNA secondary structure in phylogenetic studies to identify homologous positions: an example of alignment and data presentation from the frogs Mol. Phylogenet. Evol. 4 1995 314 330
    • (1995) Mol. Phylogenet. Evol. , vol.4 , pp. 314-330
    • Kjer, K.M.1
  • 30
    • 0035527388 scopus 로고    scopus 로고
    • Phylogeny of Trichoptera (Caddisflies): Characterization of signal and noise within multiple datasets
    • K.M. Kjer, R.J. Blahnik, and R. Holzenthal Phylogeny of Trichoptera (Caddisflies): characterization of signal and noise within multiple datasets Syst. Biol. 50 2001 781 816
    • (2001) Syst. Biol. , vol.50 , pp. 781-816
    • Kjer, K.M.1    Blahnik, R.J.2    Holzenthal, R.3
  • 31
    • 0031893927 scopus 로고    scopus 로고
    • The phylogenetic potential of entire 26S rDNA sequences in plants
    • R.K. Kuzoff, J.A. Sweere, D.E. Soltis, and E.A. Zimmer The phylogenetic potential of entire 26S rDNA sequences in plants Mol. Biol. Evol. 15 1998 251 263
    • (1998) Mol. Biol. Evol. , vol.15 , pp. 251-263
    • Kuzoff, R.K.1    Sweere, J.A.2    Soltis, D.E.3    Zimmer, E.A.4
  • 32
    • 0001205728 scopus 로고    scopus 로고
    • Comparative molecular analysis of small-subunit ribosomal 18S DNA sequences from Haynesina germanica (Ehrenberg, 1840), a common intertidal foraminifer from the North Sea
    • M.R. Langer Comparative molecular analysis of small-subunit ribosomal 18S DNA sequences from Haynesina germanica (Ehrenberg, 1840), a common intertidal foraminifer from the North Sea Neues Jahrb. Geol. Paläontol., Monatsh. 11 2000 641 650
    • (2000) Neues Jahrb. Geol. Paläontol., Monatsh. , vol.11 , pp. 641-650
    • Langer, M.R.1
  • 33
    • 0035685717 scopus 로고    scopus 로고
    • The molecular phylogenetic status of Elphidium williamsoni (Haynes, 1973) as inferred from partial 18S-rDNA sequences
    • M.R. Langer The molecular phylogenetic status of Elphidium williamsoni (Haynes, 1973) as inferred from partial 18S-rDNA sequences J. Micropaleontol. 20 2001 183
    • (2001) J. Micropaleontol. , vol.20 , pp. 183
    • Langer, M.R.1
  • 34
    • 0002787959 scopus 로고
    • Sarcodina (chiefly "thecamoebians" and Foraminiferida)
    • R.C. Moore Treatise on invertebrate paleontology, Part C-Protista 2 Univ. Kansas Press Lawrence, KS
    • A.R. Loeblich Jr., and H. Tappan Sarcodina (chiefly " Thecamoebians" and Foraminiferida) R.C. Moore Treatise on invertebrate paleontology, Part C-Protista 2 Geol. Soc. Amer. 1964 Univ. Kansas Press Lawrence, KS
    • (1964) Geol. Soc. Amer.
    • Loeblich Jr., A.R.1    Tappan, H.2
  • 37
    • 0344897110 scopus 로고    scopus 로고
    • Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies
    • D. Longet, J.M. Archibald, P.J. Keeling, and J. Pawlowski Foraminifera and Cercozoa share a common origin according to RNA polymerase II phylogenies Int. J. Syst. Evol. Microbiol. 53 2003 1735 1739
    • (2003) Int. J. Syst. Evol. Microbiol. , vol.53 , pp. 1735-1739
    • Longet, D.1    Archibald, J.M.2    Keeling, P.J.3    Pawlowski, J.4
  • 39
    • 0029752772 scopus 로고    scopus 로고
    • Comparative taphonomy of bivalves and foraminifera from Holocene tidal flat sediments, Bahia la Choya, Sonora, Mexico (northern Gulf of California): Taphonomic grades and temporal resolution
    • R.E Martin, J.F. Wehmiller, S.M. Harris, and W.D. Liddel Comparative taphonomy of bivalves and foraminifera from Holocene tidal flat sediments, Bahia la Choya, Sonora, Mexico (northern Gulf of California): taphonomic grades and temporal resolution Paleobiology 22 1999 80 90
    • (1999) Paleobiology , vol.22 , pp. 80-90
    • Martin, R.E.1    Wehmiller, J.F.2    Harris, S.M.3    Liddel, W.D.4
  • 42
    • 0035544130 scopus 로고    scopus 로고
    • Evolution of transcript structure and base composition of rDNA expansion segment D3 in ticks
    • D.K. McLain Evolution of transcript structure and base composition of rDNA expansion segment D3 in ticks Heredity 87 2001 544 557
    • (2001) Heredity , vol.87 , pp. 544-557
    • McLain, D.K.1
  • 45
    • 0033838057 scopus 로고    scopus 로고
    • Introduction to the molecular systematics of foraminifera
    • J. Pawlowski Introduction to the molecular systematics of foraminifera Micropaleontology 46 2000 1 12
    • (2000) Micropaleontology , vol.46 , pp. 1-12
    • Pawlowski, J.1
  • 46
    • 0028046865 scopus 로고
    • Phylogenetic Position of Foraminifera Inferred from LSU rRNA gene sequences
    • J. Pawlowski, I. Bolivar, J. Guiard-Maffia, and M. Gouy Phylogenetic Position of Foraminifera Inferred from LSU rRNA gene sequences Mol. Biol. Evol. 11 1994 929 938
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 929-938
    • Pawlowski, J.1    Bolivar, I.2    Guiard-Maffia, J.3    Gouy, M.4
  • 47
    • 0030918430 scopus 로고    scopus 로고
    • Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record
    • J. Pawlowski, I. Bolivar, F.J. Fahrni, C. De Vargas, M. Gouy, and L. Zaninetti Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record Mol. Biol. Evol. 14 1997 498 505
    • (1997) Mol. Biol. Evol. , vol.14 , pp. 498-505
    • Pawlowski, J.1    Bolivar, I.2    Fahrni, F.J.3    De Vargas, C.4    Gouy, M.5    Zaninetti, L.6
  • 48
    • 0035995278 scopus 로고    scopus 로고
    • Phylogenetic analysis and genetic diversity of Notodendrodes hyalinosphaira
    • J. Pawlowski, J. Fahrni, and S.S. Bowser Phylogenetic analysis and genetic diversity of Notodendrodes hyalinosphaira J. Foraminiferal Res. 32 2002 173 176
    • (2002) J. Foraminiferal Res. , vol.32 , pp. 173-176
    • Pawlowski, J.1    Fahrni, J.2    Bowser, S.S.3
  • 52
    • 0024936841 scopus 로고
    • Suprageneric ranges of foraminiferida
    • A. Ross, and D. Haman Suprageneric ranges of foraminiferida J. Foraminiferal Res. 19 1989 72 83
    • (1989) J. Foraminiferal Res. , vol.19 , pp. 72-83
    • Ross, A.1    Haman, D.2
  • 53
    • 0019185572 scopus 로고
    • The structure of the yeast ribosomal RNA genes: I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae
    • P.M. Rubtsov, M.M. Musakhanov, V.M. Zakharyev, A.S. Krayev, K.G. Skryabin, and A.A. Bayev The structure of the yeast ribosomal RNA genes: I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae Nucleic Acids Res. 8 1980 5779 5794
    • (1980) Nucleic Acids Res. , vol.8 , pp. 5779-5794
    • Rubtsov, P.M.1    Musakhanov, M.M.2    Zakharyev, V.M.3    Krayev, A.S.4    Skryabin, K.G.5    Bayev, A.A.6
  • 56
    • 0030208308 scopus 로고    scopus 로고
    • Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania)
    • T.A. Titus, and D.R. Frost Molecular homology assessment and phylogeny in the lizard family Opluridae (Squamata: Iguania) Mol. Phylogenet. Evol. 6 1996 49 62
    • (1996) Mol. Phylogenet. Evol. , vol.6 , pp. 49-62
    • Titus, T.A.1    Frost, D.R.2
  • 58
    • 0001962929 scopus 로고
    • The diversity and ecological significance of Protozoa
    • K. Vickermann The diversity and ecological significance of Protozoa Biodivers. Conserv. 1 1992 334 341
    • (1992) Biodivers. Conserv. , vol.1 , pp. 334-341
    • Vickermann, K.1
  • 59
    • 0031084115 scopus 로고    scopus 로고
    • The Strepsitera problem: Phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology
    • M.F. Whiting, J.C. Carpenter, Q.D. Wheeler, and W.C. Wheeler The Strepsitera problem: phylogeny of the holometabolous insect orders inferred from 18S and 28S ribosomal DNA sequences and morphology Syst. Biol. 46 1997 1 68
    • (1997) Syst. Biol. , vol.46 , pp. 1-68
    • Whiting, M.F.1    Carpenter, J.C.2    Wheeler, Q.D.3    Wheeler, W.C.4
  • 61
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Software package for data analysis in molecular biology and evolution
    • X. Xia, and Z. Xie DAMBE: software package for data analysis in molecular biology and evolution J. Heredity 92 2001 371 373
    • (2001) J. Heredity , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2


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