-
1
-
-
0028456728
-
Root probabilities for intraspecific gene trees under neutral coalescent theory
-
CASTELLOE, J., AND A. R. TEMPLETON. 1994. Root probabilities for intraspecific gene trees under neutral coalescent theory. Mol. Phylogenet. Evol. 3:102-113.
-
(1994)
Mol. Phylogenet. Evol.
, vol.3
, pp. 102-113
-
-
Castelloe, J.1
Templeton, A.R.2
-
2
-
-
0020869892
-
Species concepts and speciation analysis
-
CRACRAFT, J. 1983. Species concepts and speciation analysis. Curr. Ornithol. 1:159-187.
-
(1983)
Curr. Ornithol.
, vol.1
, pp. 159-187
-
-
Cracraft, J.1
-
3
-
-
0002047502
-
Speciation and its ontology: The empirical consequences of alternative species concepts for understanding patterns and processes of differentiation
-
D. Otte and J. A. Endler, eds.. Sinauer, Sunderland, Massachusetts
-
CRACRAFT, J. 1989. Speciation and its ontology: The empirical consequences of alternative species concepts for understanding patterns and processes of differentiation. Pages 28-59 in Speciation and its consequences (D. Otte and J. A. Endler, eds.). Sinauer, Sunderland, Massachusetts.
-
(1989)
Speciation and Its Consequences
, pp. 28-59
-
-
Cracraft, J.1
-
5
-
-
12044258905
-
Intraspecific cladogram estimation: Accuracy at higher levels of divergence
-
CRANDALL, K. A. 1994. Intraspecific cladogram estimation: Accuracy at higher levels of divergence. Syst. Biol. 43:222-235.
-
(1994)
Syst. Biol.
, vol.43
, pp. 222-235
-
-
Crandall, K.A.1
-
6
-
-
0040110682
-
The use of PCR and DNA sequencing techniques in the determination of crawfish phylogeny (decapoda: Cambaridae and parastacidae)
-
in press
-
CRANDALL, K. A., AND J. F. FITZPATRICK, JR. 1996. The use of PCR and DNA sequencing techniques in the determination of crawfish phylogeny (Decapoda: Cambaridae and Parastacidae). Abh. Senckenb. Naturforsch. Ges. (in press).
-
(1996)
Abh. Senckenb. Naturforsch. Ges.
-
-
Crandall, K.A.1
Fitzpatrick J.F., Jr.2
-
7
-
-
0027285731
-
Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction
-
CRANDALL, K. A., AND A. R. TEMPLETON. 1993. Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. Genetics 134:959-969.
-
(1993)
Genetics
, vol.134
, pp. 959-969
-
-
Crandall, K.A.1
Templeton, A.R.2
-
8
-
-
0027040392
-
Phylogenetic definitions and taxonomic philosophy
-
DE QUEIROZ, K. 1992. Phylogenetic definitions and taxonomic philosophy. Biol. Philos. 7:295-313.
-
(1992)
Biol. Philos.
, vol.7
, pp. 295-313
-
-
De Queiroz, K.1
-
9
-
-
84967560805
-
Phylogenetic systematics or Nelson's version of cladistics?
-
DE QUEIROZ, K., AND M. J. DONOGHUE. 1990. Phylogenetic systematics or Nelson's version of cladistics? Cladistics 6:61-75.
-
(1990)
Cladistics
, vol.6
, pp. 61-75
-
-
De Queiroz, K.1
Donoghue, M.J.2
-
10
-
-
84928076037
-
Phylogeny as a central principle in taxonomy: Phylogenetic definitions of taxon names
-
DE QUEIROZ, K., AND J. GAUTHIER. 1990. Phylogeny as a central principle in taxonomy: Phylogenetic definitions of taxon names. Syst. Zool. 39:307-322.
-
(1990)
Syst. Zool.
, vol.39
, pp. 307-322
-
-
De Queiroz, K.1
Gauthier, J.2
-
11
-
-
0002431643
-
The ages of alleles and a coalescent
-
DONNELLY, P., AND S. TAVARÉ. 1986. The ages of alleles and a coalescent. Adv. Appl. Probab. 18:1-19.
-
(1986)
Adv. Appl. Probab.
, vol.18
, pp. 1-19
-
-
Donnelly, P.1
Tavaré, S.2
-
12
-
-
0019797407
-
Evolutionary trees from DNA sequences: A maximum likelihood approach
-
FELSENSTEIN, J. 1981a. Evolutionary trees from DNA sequences: A maximum likelihood approach. J. Mol. Evol. 17:368-376.
-
(1981)
J. Mol. Evol.
, vol.17
, pp. 368-376
-
-
Felsenstein, J.1
-
13
-
-
0001306645
-
A likelihood approach to character weighting and what it tells us about parsimony and compatibility
-
FELSENSTEIN, J. 1981b. A likelihood approach to character weighting and what it tells us about parsimony and compatibility. Biol. J. Linn. Soc. 16:183-196.
-
(1981)
Biol. J. Linn. Soc.
, vol.16
, pp. 183-196
-
-
Felsenstein, J.1
-
14
-
-
0022203256
-
Phylogenies and the comparative method
-
FELSENSTEIN, J. 1985. Phylogenies and the comparative method. Am. Nat. 125:1-15.
-
(1985)
Am. Nat.
, vol.125
, pp. 1-15
-
-
Felsenstein, J.1
-
15
-
-
0024152983
-
Phylogenies from molecular sequences: Inference and reliability
-
FELSENSTEIN, J. 1988. Phylogenies from molecular sequences: Inference and reliability. Annu. Rev. Genet. 22:521-565.
-
(1988)
Annu. Rev. Genet.
, vol.22
, pp. 521-565
-
-
Felsenstein, J.1
-
19
-
-
0001963189
-
The subgenera of the crawfish genus Orconectes (Decapoda: Cambaridae)
-
FITZPATRICK, J. F., JR. 1987. The subgenera of the crawfish genus Orconectes (Decapoda: Cambaridae). Proc. Biol. Soc. Wash. 100:44-74.
-
(1987)
Proc. Biol. Soc. Wash.
, vol.100
, pp. 44-74
-
-
Fitzpatrick J.F., Jr.1
-
20
-
-
0039519031
-
A new genus and species of crawfish from the southeastern United States (Decapoda, Astacidae)
-
FITZPATRICK, J. F., JR., AND J. F. PAYNE. 1968. A new genus and species of crawfish from the southeastern United States (Decapoda, Astacidae). Proc. Biol. Soc. Wash. 81:11-22.
-
(1968)
Proc. Biol. Soc. Wash.
, vol.81
, pp. 11-22
-
-
Fitzpatrick J.F., Jr.1
Payne, J.F.2
-
22
-
-
0022376704
-
Dating the human-ape splitting by a molecular clock of mitochondrial DNA
-
HASEGAWA, M., K. KISHINO, AND T. YANO. 1985. Dating the human-ape splitting by a molecular clock of mitochondrial DNA. J. Mol. Evol. 22:160-174.
-
(1985)
J. Mol. Evol.
, vol.22
, pp. 160-174
-
-
Hasegawa, M.1
Kishino, K.2
Yano, T.3
-
23
-
-
0003058227
-
Families of trees and consensus
-
H. H. Bock, ed.. Elsevier, Amsterdam
-
HENDY, M. D., M. A. STEEL, D. PENNY, AND I. M. HENDERSON. 1988. Families of trees and consensus. Pages 355-362 in Classification and related methods of data analysis (H. H. Bock, ed.). Elsevier, Amsterdam.
-
(1988)
Classification and Related Methods of Data Analysis
, pp. 355-362
-
-
Hendy, M.D.1
Steel, M.A.2
Penny, D.3
Henderson, I.M.4
-
24
-
-
0026605537
-
CLUSTAL V: Improved software for multiple sequence alignment
-
HIGGINS, D. G., A. J. BLEASBY, AND R. FUCHS. 1992. CLUSTAL V: Improved software for multiple sequence alignment. Comput. Appl. Biosci. 8:189-191.
-
(1992)
Comput. Appl. Biosci.
, vol.8
, pp. 189-191
-
-
Higgins, D.G.1
Bleasby, A.J.2
Fuchs, R.3
-
25
-
-
0002063701
-
Discriminating between phylogenetic signal and random noise in DNA sequences
-
M. M. Miyamoto and J. Cracraft, eds.. Oxford Univ. Press, New York
-
HILLIS, D. M. 1991. Discriminating between phylogenetic signal and random noise in DNA sequences. Pages 278-294 in Phylogenetic analysis of DNA sequences (M. M. Miyamoto and J. Cracraft, eds.). Oxford Univ. Press, New York.
-
(1991)
Phylogenetic Analysis of DNA Sequences
, pp. 278-294
-
-
Hillis, D.M.1
-
26
-
-
12044253190
-
An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis
-
HILLIS, D. M., AND J. J. BULL. 1993. An empirical test of bootstrapping as a method for assessing confidence in phylogenetic analysis. Syst. Biol. 42:182-192.
-
(1993)
Syst. Biol.
, vol.42
, pp. 182-192
-
-
Hillis, D.M.1
Bull, J.J.2
-
27
-
-
0027055554
-
Signal, noise, and reliability in molecular phylogenetic analyses
-
HILLIS, D. M., AND J. P. HUELSENBECK. 1992. Signal, noise, and reliability in molecular phylogenetic analyses J. Hered. 83:189-195.
-
(1992)
J. Hered.
, vol.83
, pp. 189-195
-
-
Hillis, D.M.1
Huelsenbeck, J.P.2
-
28
-
-
0040110681
-
On the distribution and phylogeny of the crayfish genus Cambarus
-
P. C. Holt, R. L. Hoffman, and C. W. Hart, Jr., eds.. Virginia Polytechnic Institute and State Univ., Blacksburg
-
HOBBS, H. H., JR. 1969. On the distribution and phylogeny of the crayfish genus Cambarus. Pages 93-178 in The distributional history of the biota of the southern Appalachians, Part I. Invertebrates (P. C. Holt, R. L. Hoffman, and C. W. Hart, Jr., eds.). Virginia Polytechnic Institute and State Univ., Blacksburg.
-
(1969)
The Distributional History of the Biota of the Southern Appalachians, Part I. Invertebrates
, pp. 93-178
-
-
Hobbs H.H., Jr.1
-
29
-
-
0001621479
-
Adaptations and convergence in North American crayfishes
-
HOBBS, H. H., JR. 1974. Adaptations and convergence in North American crayfishes. Freshwater Crayfish 2:541-551.
-
(1974)
Freshwater Crayfish
, vol.2
, pp. 541-551
-
-
Hobbs H.H., Jr.1
-
30
-
-
0003189731
-
An illustrated checklist of the American crayfishes (Decapoda: Astacidae, Cambaridae, and Parastacidae)
-
HOBBS, H. H., JR. 1989. An illustrated checklist of the American crayfishes (Decapoda: Astacidae, Cambaridae, and Parastacidae). Smithson. Contrib. Zool. 480:1-236.
-
(1989)
Smithson. Contrib. Zool.
, vol.480
, pp. 1-236
-
-
Hobbs H.H., Jr.1
-
32
-
-
84960557134
-
Tree-length distribution skewness: An indicator of phylogenetic information
-
HUELSENBECK, J. P. 1991. Tree-length distribution skewness: An indicator of phylogenetic information. Syst. Zool. 40:257-270.
-
(1991)
Syst. Zool.
, vol.40
, pp. 257-270
-
-
Huelsenbeck, J.P.1
-
33
-
-
12044255023
-
Success of phylogenetic methods in the four-taxon case
-
HUELSENBECK, J. P., AND D. M. HILLIS. 1993. Success of phylogenetic methods in the four-taxon case. Syst. Biol. 42:247-264.
-
(1993)
Syst. Biol.
, vol.42
, pp. 247-264
-
-
Huelsenbeck, J.P.1
Hillis, D.M.2
-
34
-
-
0000732090
-
Evolution of protein molecules
-
H. M. Munro, ed.. Academic Press, New York
-
JUKES, T. H., AND C. R. CANTOR. 1969. Evolution of protein molecules. Pages 21-132 in Mammalian protein metabolism (H. M. Munro, ed.). Academic Press, New York.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
35
-
-
0019296687
-
A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences
-
KIMURA, M. 1980. A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
-
(1980)
J. Mol. Evol.
, vol.16
, pp. 111-120
-
-
Kimura, M.1
-
36
-
-
0025123041
-
Complete cDNA sequence encoding mitochondrial large ribosomal RNA of Drosophila melanogaster
-
KOBAYASHI, S., AND M. OKADA. 1990. Complete cDNA sequence encoding mitochondrial large ribosomal RNA of Drosophila melanogaster. Nucelic Acids Res. 18:4592.
-
(1990)
Nucelic Acids Res.
, vol.18
, pp. 4592
-
-
Kobayashi, S.1
Okada, M.2
-
37
-
-
84960569058
-
The discovery and importance of multiple islands of most-parsimonious trees
-
MADDISON, D. R. 1991. The discovery and importance of multiple islands of most-parsimonious trees. Syst. Zool. 40:315-328.
-
(1991)
Syst. Zool.
, vol.40
, pp. 315-328
-
-
Maddison, D.R.1
-
38
-
-
11944249445
-
Geographic origins of human mitochondrial DNA: Phylogenetic evidence from control region sequences
-
MADDISON, D. R., M. RUVOLO, AND D. L. SWOFFORD. 1992. Geographic origins of human mitochondrial DNA: Phylogenetic evidence from control region sequences. Syst. Biol. 41:111-124.
-
(1992)
Syst. Biol.
, vol.41
, pp. 111-124
-
-
Maddison, D.R.1
Ruvolo, M.2
Swofford, D.L.3
-
40
-
-
0001367498
-
Similarities in fish distribution and water quality patterns in streams of Arkansas: Congruence of multivariate analyses
-
MATTHEWS, W. J., D. J. HOUGH, AND H. W. ROBISON. 1992. Similarities in fish distribution and water quality patterns in streams of Arkansas: Congruence of multivariate analyses. Copeia 1992:296-305.
-
(1992)
Copeia
, vol.1992
, pp. 296-305
-
-
Matthews, W.J.1
Hough, D.J.2
Robison, H.W.3
-
41
-
-
0023480940
-
Evolution of animal mitochondrial DNA: Relevance for population biology and systematics
-
MORITZ, C., T. E. DOWLING, AND W. M. BROWN. 1987. Evolution of animal mitochondrial DNA: Relevance for population biology and systematics. Annu. Rev. Ecol. Syst. 18:269-292.
-
(1987)
Annu. Rev. Ecol. Syst.
, vol.18
, pp. 269-292
-
-
Moritz, C.1
Dowling, T.E.2
Brown, W.M.3
-
42
-
-
0002267691
-
Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation
-
S. Karlin and E. Nevo, eds.. Academic Press, New York
-
NEIGEL, J. E., AND J. C. AVISE. 1986. Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation. Pages 515-534 in Evolutionary processes and theory (S. Karlin and E. Nevo, eds.). Academic Press, New York.
-
(1986)
Evolutionary Processes and Theory
, pp. 515-534
-
-
Neigel, J.E.1
Avise, J.C.2
-
43
-
-
0003973174
-
-
Richard D. Irwin, Homewood, Illinois
-
NETER, J., W. WASSERMAN, AND M. H. KUTNER. 1985. Applied linear statistical models. Richard D. Irwin, Homewood, Illinois.
-
(1985)
Applied Linear Statistical Models
-
-
Neter, J.1
Wasserman, W.2
Kutner, M.H.3
-
44
-
-
38249033874
-
The genetic divergence of three populations
-
PADMADISASTRA, S. 1987. The genetic divergence of three populations. Theor. Popul. Biol. 32:347-365.
-
(1987)
Theor. Popul. Biol.
, vol.32
, pp. 347-365
-
-
Padmadisastra, S.1
-
45
-
-
0023822631
-
Relationships between gene trees and species trees
-
PAMILO, P., AND M. NEI. 1988. Relationships between gene trees and species trees. Mol. Biol. Evol. 5:568-583.
-
(1988)
Mol. Biol. Evol.
, vol.5
, pp. 568-583
-
-
Pamilo, P.1
Nei, M.2
-
46
-
-
12044256661
-
Paraphyly, polyphyly, and the nature of species boundaries in pocket gophers (genus Thomomys)
-
PATTON, J. L., AND M. F. SMITH. 1994. Paraphyly, polyphyly, and the nature of species boundaries in pocket gophers (genus Thomomys). Syst. Biol. 43:11-26.
-
(1994)
Syst. Biol.
, vol.43
, pp. 11-26
-
-
Patton, J.L.1
Smith, M.F.2
-
47
-
-
0010682742
-
An introduction to the crayfishes of Missouri
-
PFLIEGER, W. L. 1987. An introduction to the crayfishes of Missouri. Mo. Conserv. 48:17-31.
-
(1987)
Mo. Conserv.
, vol.48
, pp. 17-31
-
-
Pflieger, W.L.1
-
49
-
-
0025949736
-
Monophyly/paraphyly/polyphyly and gene/species trees: An example from Drosophila
-
POWELL, J. R. 1991. Monophyly/paraphyly/polyphyly and gene/species trees: An example from Drosophila. Mol. Biol. Evol. 8:892-896.
-
(1991)
Mol. Biol. Evol.
, vol.8
, pp. 892-896
-
-
Powell, J.R.1
-
50
-
-
0023688014
-
Ancient origin of lactalbumin from lysozyme: Analysis of DNA and amino acid sequences
-
PRAGER, E. M., AND A. C. WILSON. 1988. Ancient origin of lactalbumin from lysozyme: Analysis of DNA and amino acid sequences. J. Mol. Evol. 27: 326-335.
-
(1988)
J. Mol. Evol.
, vol.27
, pp. 326-335
-
-
Prager, E.M.1
Wilson, A.C.2
-
51
-
-
0040704233
-
Mitochondrial DNA variation in cryptobranchus alleganiensis, a salamander with extremely low allozyme diversity
-
ROUTMAN, E. 1993. Mitochondrial DNA variation in Cryptobranchus alleganiensis, a salamander with extremely low allozyme diversity. Copeia 1993:407-416.
-
(1993)
Copeia
, vol.1993
, pp. 407-416
-
-
Routman, E.1
-
52
-
-
0000482926
-
Parsimony, molecular evolution, and biogeography: The case of the North American giant salamander
-
ROUTMAN, E., R. WU, AND A. R. TEMPLETON. 1994. Parsimony, molecular evolution, and biogeography: The case of the North American giant salamander. Evolution 48:1799-1809.
-
(1994)
Evolution
, vol.48
, pp. 1799-1809
-
-
Routman, E.1
Wu, R.2
Templeton, A.R.3
-
53
-
-
0026660413
-
A simple method for estimating and testing minimum-evolution trees
-
RZHETSKY, A., AND M. NEI. 1992. A simple method for estimating and testing minimum-evolution trees. Mol. Biol. Evol. 9:945-967.
-
(1992)
Mol. Biol. Evol.
, vol.9
, pp. 945-967
-
-
Rzhetsky, A.1
Nei, M.2
-
54
-
-
0023850178
-
Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase
-
SAIKI, R. K., D. H. GELFAND, S. STOFFEL, S. J. SCHARF, R. HIGUCHI, G. T. HORN, K. B. MULLIS, AND H. A. ERLICH. 1988. Primer-directed enzymatic amplification of DNA with a thermostable DNA polymerase. Science 239:405-407.
-
(1988)
Science
, vol.239
, pp. 405-407
-
-
Saiki, R.K.1
Gelfand, D.H.2
Stoffel, S.3
Scharf, S.J.4
Higuchi, R.5
Horn, G.T.6
Mullis, K.B.7
Erlich, H.A.8
-
55
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
SAITOU, N., AND M. NEI. 1987. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
57
-
-
0025618391
-
Genealogy of neutral genes in two partially isolated populations
-
TAKAHATA, N., AND M. SLATKIN. 1990. Genealogy of neutral genes in two partially isolated populations. Theor. Popul. Biol. 38:331-350.
-
(1990)
Theor. Popul. Biol.
, vol.38
, pp. 331-350
-
-
Takahata, N.1
Slatkin, M.2
-
58
-
-
0001897782
-
Convergent evolution and nonparametric inferences from restriction data and DNA sequences
-
B. S. Weir, ed.. Marcel Dekker, New York
-
TEMPLETON, A. R. 1983a. Convergent evolution and nonparametric inferences from restriction data and DNA sequences. Pages 151-179 in Statistical analysis of DNA sequence data (B. S. Weir, ed.). Marcel Dekker, New York.
-
(1983)
Statistical Analysis of DNA Sequence Data
, pp. 151-179
-
-
Templeton, A.R.1
-
59
-
-
0021084212
-
Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes
-
TEMPLETON, A. R. 1983b. Phylogenetic inference from restriction endonuclease cleavage site maps with particular reference to the evolution of humans and the apes. Evolution 37:221-244.
-
(1983)
Evolution
, vol.37
, pp. 221-244
-
-
Templeton, A.R.1
-
60
-
-
0026662698
-
A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation
-
TEMPLETON, A. R., K. A. CRANDALL, AND C. F. SING. 1992. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. Genetics 132:619-633.
-
(1992)
Genetics
, vol.132
, pp. 619-633
-
-
Templeton, A.R.1
Crandall, K.A.2
Sing, C.F.3
-
61
-
-
0000641591
-
The genetic divergence of two populations
-
WATTERSON, G. A. 1985. The genetic divergence of two populations. Theor. Popul. Biol. 27:298-317.
-
(1985)
Theor. Popul. Biol.
, vol.27
, pp. 298-317
-
-
Watterson, G.A.1
-
62
-
-
0005767445
-
An explanation for the distribution of a North American crayfish
-
WILLIAMS, A. B. 1954a. An explanation for the distribution of a North American crayfish. Ecology 35: 573-575.
-
(1954)
Ecology
, vol.35
, pp. 573-575
-
-
Williams, A.B.1
-
63
-
-
0000432939
-
Speciation and distribution of the crayfishes of the Ozark plateaus and Ouachita provinces
-
WILLIAMS, A. B. 1954b. Speciation and distribution of the crayfishes of the Ozark plateaus and Ouachita provinces. Univ. Kans. Sci. Bull. 36:803-918.
-
(1954)
Univ. Kans. Sci. Bull.
, vol.36
, pp. 803-918
-
-
Williams, A.B.1
-
64
-
-
0026031181
-
Inferences of species phylogeny in relation to segregation of ancient polymorphisms
-
WU, C.-I. 1991. Inferences of species phylogeny in relation to segregation of ancient polymorphisms. Genetics 127:429-435.
-
(1991)
Genetics
, vol.127
, pp. 429-435
-
-
Wu, C.-I.1
|