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Volumn 14, Issue 5, 1997, Pages 498-505

Extreme differences in rates of molecular evolution of foraminifera revealed by comparison of ribosomal DNA sequences and the fossil record

Author keywords

foraminifera; molecular phylogenetics; rates of substitution; SSU rDNA

Indexed keywords

RIBOSOME DNA; RIBOSOME RNA;

EID: 0030918430     PISSN: 07374038     EISSN: None     Source Type: Journal    
DOI: 10.1093/oxfordjournals.molbev.a025786     Document Type: Article
Times cited : (122)

References (50)
  • 1
    • 0008252868 scopus 로고
    • An allogromiid ancestor of the miliolidean foraminifera
    • ARNOLD, Z. M. 1978. An allogromiid ancestor of the miliolidean foraminifera. J. Foraminiferal Res. 8:83-96.
    • (1978) J. Foraminiferal Res. , vol.8 , pp. 83-96
    • Arnold, Z.M.1
  • 2
    • 0001314977 scopus 로고
    • Rates of evolution in some Cenozoic planktonic foraminifera
    • BERGGREN, W. A. 1969. Rates of evolution in some Cenozoic planktonic foraminifera. Micropaleontology 15:351-365.
    • (1969) Micropaleontology , vol.15 , pp. 351-365
    • Berggren, W.A.1
  • 3
    • 0000562831 scopus 로고
    • Oligocene to Holocene low latitude planktic foraminifera
    • H. M. BOLLI, J. B. SAUNDERS, and K. PERCH-NIELSEN, eds. Cambridge University Press, Cambridge
    • BOLLI, H. M., and J. B. SAUNDERS. 1985. Oligocene to Holocene low latitude planktic foraminifera. Pp. 155-262 in H. M. BOLLI, J. B. SAUNDERS, and K. PERCH-NIELSEN, eds. Plankton stratigraphy. Cambridge University Press, Cambridge.
    • (1985) Plankton Stratigraphy , pp. 155-262
    • Bolli, H.M.1    Saunders, J.B.2
  • 4
    • 0026778673 scopus 로고
    • Extensive variation in evolutionary rate of rbcL gene sequences among seed plants
    • BOUSQUET, J., S. H. STRAUSS, A. H. DOERKSEN, and R. A. PRICE. 1992. Extensive variation in evolutionary rate of rbcL gene sequences among seed plants. Proc. Natl. Acad. Sci. USA 89:7844-7848.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 7844-7848
    • Bousquet, J.1    Strauss, S.H.2    Doerksen, A.H.3    Price, R.A.4
  • 5
    • 0001213913 scopus 로고
    • Larger agglutinated foraminifera of McMurdo Sound, Antarctica: Are Astrammina rara and Notodendrodes antarcticos allogromiids incognito?
    • BOWSER, S. S., A. J. GOODAY, S. P. ALEXANDER, and J. M. BERNHARD. 1995. Larger agglutinated foraminifera of McMurdo Sound, Antarctica: are Astrammina rara and Notodendrodes antarcticos allogromiids incognito? Mar. Micropaleontol. 26:75-88.
    • (1995) Mar. Micropaleontol. , vol.26 , pp. 75-88
    • Bowser, S.S.1    Gooday, A.J.2    Alexander, S.P.3    Bernhard, J.M.4
  • 6
    • 0022534918 scopus 로고
    • Rates of DNA sequence evolution differ between taxonomic groups
    • BRITTEN, R. J. 1986. Rates of DNA sequence evolution differ between taxonomic groups. Science 231:1393-1398.
    • (1986) Science , vol.231 , pp. 1393-1398
    • Britten, R.J.1
  • 7
    • 0001487836 scopus 로고
    • The development of Globigerinoides ruber (d'Orbigny 1839) from the Miocene to Recent
    • CORDEY, W. G. 1967. The development of Globigerinoides ruber (d'Orbigny 1839) from the Miocene to Recent. Micropaleontology 10:647-659.
    • (1967) Micropaleontology , vol.10 , pp. 647-659
    • Cordey, W.G.1
  • 8
    • 0004340527 scopus 로고
    • Variabilité et stabilité des Peneroplinae depuis l'Eocène jusqu'aux temps actuels
    • COLOM, G. 1971. Variabilité et stabilité des Peneroplinae depuis l'Eocène jusqu'aux temps actuels. Rev. Micropaléontol. 14:48-53.
    • (1971) Rev. Micropaléontol. , vol.14 , pp. 48-53
    • Colom, G.1
  • 9
    • 0026306756 scopus 로고
    • Early Cambrian Foraminifera from West Africa
    • CULVER, S. J. 1991. Early Cambrian Foraminifera from West Africa. Science 254:689-691.
    • (1991) Science , vol.254 , pp. 689-691
    • Culver, S.J.1
  • 10
    • 0003000522 scopus 로고
    • Foraminifera
    • J. H. LIPPS, ed. Blackwell, Boston, Mass.
    • _. 1993. Foraminifera. Pp. 203-247 in J. H. LIPPS, ed. Fossil prokaryotes and protists. Blackwell, Boston, Mass.
    • (1993) Fossil Prokaryotes and Protists , pp. 203-247
  • 12
    • 0029111288 scopus 로고
    • Identification of actins in foraminifera: Phylogenetic implications
    • FAHRNI, J. F., and J. PAWLOWSKI. 1994. Identification of actins in foraminifera: phylogenetic implications. Eur. J. Protistol. 31:161-166.
    • (1994) Eur. J. Protistol. , vol.31 , pp. 161-166
    • Fahrni, J.F.1    Pawlowski, J.2
  • 13
    • 0024152983 scopus 로고
    • Phylogenies from molecular sequences: Inference and reliability
    • FELSENSTEIN, J. 1988. Phylogenies from molecular sequences: inference and reliability. Annu. Rev. Genet. 22:521-565.
    • (1988) Annu. Rev. Genet. , vol.22 , pp. 521-565
    • Felsenstein, J.1
  • 14
    • 0030464460 scopus 로고    scopus 로고
    • SEAVIEW and PHYLO_WIN: Two graphic tools for sequence alignment and molecular phylogeny
    • GALTIER, N., and M. GOUY. 1996. SEAVIEW and PHYLO_WIN: two graphic tools for sequence alignment and molecular phylogeny. Comput. Appl. Biosci. 12:543-548.
    • (1996) Comput. Appl. Biosci. , vol.12 , pp. 543-548
    • Galtier, N.1    Gouy, M.2
  • 15
    • 0028583549 scopus 로고
    • Early Jurassic planktonic foraminifera from Hungary
    • GÖRÖG, A. 1994. Early Jurassic planktonic foraminifera from Hungary. Micropaleontology 40:255-260.
    • (1994) Micropaleontology , vol.40 , pp. 255-260
    • Görög, A.1
  • 16
    • 0000656143 scopus 로고
    • Test structure and evolution in the Foraminifera
    • HANSEN, H. J. 1979. Test structure and evolution in the Foraminifera. Lethaia 12:173-182.
    • (1979) Lethaia , vol.12 , pp. 173-182
    • Hansen, H.J.1
  • 18
    • 0025133472 scopus 로고
    • Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships
    • HEDGES, S. B., K. D. MOBERG, and L. R. MAXSON. 1990. Tetrapod phylogeny inferred from 18S and 28S ribosomal RNA sequences and a review of the evidence for amniote relationships. Mol. Biol. Evol. 7:607-633.
    • (1990) Mol. Biol. Evol. , vol.7 , pp. 607-633
    • Hedges, S.B.1    Moberg, K.D.2    Maxson, L.R.3
  • 20
    • 0030176881 scopus 로고    scopus 로고
    • Preservation of foraminifera for DNA extraction and PCR amplification
    • HOLZMANN, M., and J. PAWLOWSKI. 1996. Preservation of foraminifera for DNA extraction and PCR amplification. J. Foraminiferal Res. 26:264-267.
    • (1996) J. Foraminiferal Res. , vol.26 , pp. 264-267
    • Holzmann, M.1    Pawlowski, J.2
  • 21
    • 0022827679 scopus 로고
    • Age de la divergence Mus-Rattus: Comparaison des données paléontologiques et moléculaires
    • JAEGER, J. J., H. TONG, and C. DENYS. 1986. Age de la divergence Mus-Rattus: comparaison des données paléontologiques et moléculaires. C. R. Acad. Sci. Paris 302:917-922.
    • (1986) C. R. Acad. Sci. Paris , vol.302 , pp. 917-922
    • Jaeger, J.J.1    Tong, H.2    Denys, C.3
  • 22
    • 0019296687 scopus 로고
    • A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences
    • KIMURA, M. 1980. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:111-120.
    • (1980) J. Mol. Evol. , vol.16 , pp. 111-120
    • Kimura, M.1
  • 23
    • 0024766891 scopus 로고
    • A molecular view of primate phylogeny and important systematic and evolutionary questions
    • KOOP, B. F., D. A. TAGLE, M. GOODMAN, and J. L. SLIGHTOM. 1989. A molecular view of primate phylogeny and important systematic and evolutionary questions. Mol. Biol. Evol. 6:580-612.
    • (1989) Mol. Biol. Evol. , vol.6 , pp. 580-612
    • Koop, B.F.1    Tagle, D.A.2    Goodman, M.3    Slightom, J.L.4
  • 24
    • 0028177080 scopus 로고
    • A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates
    • KUHNER, M. K., and J. FELSENSTEIN. 1994. A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. Mol. Biol. Evol. 11:459-468.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 459-468
    • Kuhner, M.K.1    Felsenstein, J.2
  • 26
    • 0002668674 scopus 로고
    • Foraminifera
    • L. MARGULIS, J. O. CORLISS, M. MELKONIAN, and D. CHAPMAN, eds. Jones and Bartlett, Boston, Mass.
    • LEE, J. J. 1990. Foraminifera. Pp. 524-548 in L. MARGULIS, J. O. CORLISS, M. MELKONIAN, and D. CHAPMAN, eds. Handbook of Protoctista. Jones and Bartlett, Boston, Mass.
    • (1990) Handbook of Protoctista , pp. 524-548
    • Lee, J.J.1
  • 27
    • 0030076124 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis
    • LI, W.-H., D. L. ELLSWORTH, J. KRUSHKA, B.H.-J. CHANG, and D. HEWETT-HEMMETT. 1996. Rates of nucleotide substitution in primates and rodents and the generation-time effect hypothesis. Mol. Phylogenet. Evol. 5:182-187
    • (1996) Mol. Phylogenet. Evol. , vol.5 , pp. 182-187
    • Li, W.-H.1    Ellsworth, D.L.2    Krushka, J.3    Chang, B.H.-J.4    Hewett-Hemmett, D.5
  • 29
    • 0015870230 scopus 로고
    • Test structure in foraminifera
    • LIPPS, J. H. 1973. Test structure in foraminifera. Ann. Rev. Microbiol. 27:471-488.
    • (1973) Ann. Rev. Microbiol. , vol.27 , pp. 471-488
    • Lipps, J.H.1
  • 31
    • 0024937133 scopus 로고
    • Implications of wall composition and structure in agglutinated foraminifers
    • _. 1989. Implications of wall composition and structure in agglutinated foraminifers. J. Paleontol. 63:769-777.
    • (1989) J. Paleontol. , vol.63 , pp. 769-777
  • 32
    • 0027308854 scopus 로고
    • Body size, metabolic rate, generation time, and the molecular clock
    • MARTIN, A. P., and S. R. PALUMBI. 1993. Body size, metabolic rate, generation time, and the molecular clock. Proc. Natl. Acad. Sci. USA 90:4087-4091.
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 4087-4091
    • Martin, A.P.1    Palumbi, S.R.2
  • 33
    • 0028581271 scopus 로고
    • Essai de caractérisation phylogénétique de Foraminifères planctoniques à partir de séquences partielles d'ADNr 28S
    • MERLE, C., M. MOULLADE, O. LIMA, and R. PERASSO. 1994. Essai de caractérisation phylogénétique de Foraminifères planctoniques à partir de séquences partielles d'ADNr 28S. C. R. Acad. Sci. Paris 319:149-153.
    • (1994) C. R. Acad. Sci. Paris , vol.319 , pp. 149-153
    • Merle, C.1    Moullade, M.2    Lima, O.3    Perasso, R.4
  • 34
    • 0023514080 scopus 로고
    • Evolution in bacteria: Evidence of a universal substitution rate in cellular genomes
    • OCHMAN, H., and A. C. WILSON. 1987. Evolution in bacteria: evidence of a universal substitution rate in cellular genomes. J. Mol. Evol. 26:74-86.
    • (1987) J. Mol. Evol. , vol.26 , pp. 74-86
    • Ochman, H.1    Wilson, A.C.2
  • 35
    • 0023498406 scopus 로고
    • Earliest phylogenetic branchings: Comparing rRNA-based evolutionary trees inferred with various techniques
    • OLSEN, G. J. 1987. Earliest phylogenetic branchings: comparing rRNA-based evolutionary trees inferred with various techniques. Cold Spring Harb. Symp. Quant. Biol. 52:825-837.
    • (1987) Cold Spring Harb. Symp. Quant. Biol. , vol.52 , pp. 825-837
    • Olsen, G.J.1
  • 36
    • 0027957393 scopus 로고
    • FastDNAml: A tool for construction of phylogenetic trees of DNA sequences using maximum likelihood
    • OLSEN, G. J., H. MATSUDA, R. HAGSTROM, and R. OVERBEEK. 1994. FastDNAml: a tool for construction of phylogenetic trees of DNA sequences using maximum likelihood. Comput. Appl. Biosci. 10:41-48.
    • (1994) Comput. Appl. Biosci. , vol.10 , pp. 41-48
    • Olsen, G.J.1    Matsuda, H.2    Hagstrom, R.3    Overbeek, R.4
  • 38
    • 0028046865 scopus 로고
    • Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences
    • PAWLOWSKI, J., I. BOLIVAR, J. GUIARD-MAFFIA, and M. GOUY. 1994. Phylogenetic position of foraminifera inferred from LSU rRNA gene sequences. Mol. Biol. Evol. 11:929-938.
    • (1994) Mol. Biol. Evol. , vol.11 , pp. 929-938
    • Pawlowski, J.1    Bolivar, I.2    Guiard-Maffia, J.3    Gouy, M.4
  • 39
    • 0029853148 scopus 로고    scopus 로고
    • WWW-Query: An on-line retrieval system for biological sequence banks
    • PERRIÈRE, G., and M. GOUY. 1996. WWW-Query: an on-line retrieval system for biological sequence banks. Biochimie 78:364-369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perrière, G.1    Gouy, M.2
  • 40
    • 0028578194 scopus 로고
    • Can the Cambrian explosion be inferred through molecular phylogeny?
    • PHILIPPE, H., A. CHENUIL, and A. ADOUTTE. 1994. Can the Cambrian explosion be inferred through molecular phylogeny? Development (Suppl.):15-25.
    • (1994) Development , Issue.SUPPL. , pp. 15-25
    • Philippe, H.1    Chenuil, A.2    Adoutte, A.3
  • 41
    • 0026295544 scopus 로고
    • Toward a classification of planktonic foraminifera based on biochemical, geochemical and morphological criteria
    • ROBBINS, L. L., and N. HEALY-WILLIAMS. 1991. Toward a classification of planktonic foraminifera based on biochemical, geochemical and morphological criteria. J. Foraminiferal Res. 21:159-167.
    • (1991) J. Foraminiferal Res. , vol.21 , pp. 159-167
    • Robbins, L.L.1    Healy-Williams, N.2
  • 42
    • 0002608966 scopus 로고
    • Palaeooekologie der Foraminiferen in der Sandschalerzone (Badenien, Miozaen) des Wiener Beckens
    • RUPP, C. 1986. Palaeooekologie der Foraminiferen in der Sandschalerzone (Badenien, Miozaen) des Wiener Beckens. Beitr. Palaeontol. Oesterr. 12:1-180.
    • (1986) Beitr. Palaeontol. Oesterr. , vol.12 , pp. 1-180
    • Rupp, C.1
  • 43
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • SAITOU, N., and M. NEI. 1987. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4:406-425.
    • (1987) Mol. Biol. Evol. , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 44
    • 0002023507 scopus 로고
    • Protist evolution and phylogeny as discerned from small subunit ribosomal RNA sequence comparisons
    • SCHLEGEL, M. 1991. Protist evolution and phylogeny as discerned from small subunit ribosomal RNA sequence comparisons. Eur. J. Protistol. 27:207-219.
    • (1991) Eur. J. Protistol. , vol.27 , pp. 207-219
    • Schlegel, M.1
  • 45
    • 0027129017 scopus 로고
    • Comparative variation of morphological and molecular evolution through geologic time: 28S ribosomal RNA versus morphology in echinoids
    • SMITH, A. B., B. LAFAY, and R. CHRISTEN. 1992. Comparative variation of morphological and molecular evolution through geologic time: 28S ribosomal RNA versus morphology in echinoids. Philos. Trans. R. Soc. Lond. B 338:365-382.
    • (1992) Philos. Trans. R. Soc. Lond. B , vol.338 , pp. 365-382
    • Smith, A.B.1    Lafay, B.2    Christen, R.3
  • 46
    • 0003117296 scopus 로고
    • Amplification of ribosomal RNA genes for molecular evolution studies
    • M. A. INNIS, D. H. GELFAND, J. J. SNINSKY, and T. J. WHITE, eds. Academic Press, New York, N.Y.
    • SOGIN, M. L. 1990. Amplification of ribosomal RNA genes for molecular evolution studies. Pp. 307-314 in M. A. INNIS, D. H. GELFAND, J. J. SNINSKY, and T. J. WHITE, eds. PCR protocols. A guide to methods and applications. Academic Press, New York, N.Y.
    • (1990) PCR Protocols. A Guide to Methods and Applications , pp. 307-314
    • Sogin, M.L.1
  • 48
    • 0024194080 scopus 로고
    • Foraminiferal evolution, diversification and extinction
    • TAPPAN, H., and A. R. LOEBLICH, JR. 1988. Foraminiferal evolution, diversification and extinction. J. Paleontol. 62:695-714.
    • (1988) J. Paleontol. , vol.62 , pp. 695-714
    • Tappan, H.1    Loeblich Jr., A.R.2


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