메뉴 건너뛰기




Volumn 15, Issue 2, 2019, Pages

Convergent perturbation of the human domain-resolved interactome by viruses and mutations inducing similar disease phenotypes

Author keywords

[No Author keywords available]

Indexed keywords

PROTEINS; VIRUSES;

EID: 85061618523     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1006762     Document Type: Article
Times cited : (6)

References (88)
  • 1
    • 79952674000 scopus 로고    scopus 로고
    • Interactome networks and human disease
    • 21414488
    • Vidal M., Cusick M.E., and Barabasi A.L., Interactome networks and human disease. Cell, 2011. 144 (6): p. 986–98. https://doi.org/10.1016/j.cell.2011.02.016 PMID: 21414488
    • (2011) Cell , vol.144 , Issue.6 , pp. 986-998
    • Vidal, M.1    Cusick, M.E.2    Barabasi, A.L.3
  • 2
    • 0034628487 scopus 로고    scopus 로고
    • Guilt-by-association goes global
    • 10688178
    • Oliver S., Guilt-by-association goes global. Nature, 2000. 403(6770): p. 601–3. https://doi.org/10.1038/35001165 PMID: 10688178
    • (2000) Nature , vol.403 , Issue.6770 , pp. 601-603
    • Oliver, S.1
  • 3
    • 34547146985 scopus 로고    scopus 로고
    • Network medicine—from obesity to the "diseasome"
    • 17652657
    • Barabasi A.L., Network medicine—from obesity to the "diseasome". N Engl J Med, 2007. 357(4): p. 404–7. https://doi.org/10.1056/NEJMe078114 PMID: 17652657
    • (2007) N Engl J Med , vol.357 , Issue.4 , pp. 404-407
    • Barabasi, A.L.1
  • 4
    • 34547140875 scopus 로고    scopus 로고
    • The human disease network
    • 17502601
    • Goh K.I., et al., The human disease network. Proc Natl Acad Sci U S A, 2007. 104(21): p. 8685–90. https://doi.org/10.1073/pnas.0701361104 PMID: 17502601
    • (2007) Proc Natl Acad Sci U S A , vol.104 , Issue.21 , pp. 8685-8690
    • Goh, K.I.1
  • 5
    • 72849142731 scopus 로고    scopus 로고
    • Edgetic perturbation models of human inherited disorders
    • 19888216
    • Zhong Q., et al., Edgetic perturbation models of human inherited disorders. Mol Syst Biol, 2009. 5: p. 321. https://doi.org/10.1038/msb.2009.80 PMID: 19888216
    • (2009) Mol Syst Biol , vol.5 , pp. 321
    • Zhong, Q.1
  • 6
    • 84863010950 scopus 로고    scopus 로고
    • Three-dimensional reconstruction of protein networks provides insight into human genetic disease
    • 22252508
    • Wang X., et al., Three-dimensional reconstruction of protein networks provides insight into human genetic disease. Nat Biotechnol, 2012. 30(2): p. 159–64. https://doi.org/10.1038/nbt.2106 PMID: 22252508
    • (2012) Nat Biotechnol , vol.30 , Issue.2 , pp. 159-164
    • Wang, X.1
  • 7
    • 84889606541 scopus 로고    scopus 로고
    • Edgotype: A fundamental link between genotype and phenotype
    • 24287335
    • Sahni N., et al., Edgotype: a fundamental link between genotype and phenotype. Curr Opin Genet Dev, 2013. 23(6): p. 649–57. https://doi.org/10.1016/j.gde.2013.11.002 PMID: 24287335
    • (2013) Curr Opin Genet Dev , vol.23 , Issue.6 , pp. 649-657
    • Sahni, N.1
  • 8
    • 84928389942 scopus 로고    scopus 로고
    • Widespread macromolecular interaction perturbations in human genetic disorders
    • 25910212
    • Sahni N., et al., Widespread macromolecular interaction perturbations in human genetic disorders. Cell, 2015. 161(3): p. 647–60. https://doi.org/10.1016/j.cell.2015.04.013 PMID: 25910212
    • (2015) Cell , vol.161 , Issue.3 , pp. 647-660
    • Sahni, N.1
  • 9
    • 84864053752 scopus 로고    scopus 로고
    • Viral perturbations of host networks reflect disease etiology
    • 22761553
    • Gulbahce N., et al., Viral perturbations of host networks reflect disease etiology. PLoS Comput Biol, 2012. 8(6): p. e1002531. https://doi.org/10.1371/journal.pcbi.1002531 PMID: 22761553
    • (2012) Plos Comput Biol , vol.8 , Issue.6
    • Gulbahce, N.1
  • 10
    • 84864285545 scopus 로고    scopus 로고
    • Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins
    • 22810586
    • Rozenblatt-Rosen O., et al., Interpreting cancer genomes using systematic host network perturbations by tumour virus proteins. Nature, 2012. 487(7408): p. 491–5. https://doi.org/10.1038/nature11288 PMID: 22810586
    • (2012) Nature , vol.487 , Issue.7408 , pp. 491-495
    • Rozenblatt-Rosen, O.1
  • 11
    • 33845875196 scopus 로고    scopus 로고
    • Relating three-dimensional structures to protein networks provides evolutionary insights
    • 17185604
    • Kim P.M., et al., Relating three-dimensional structures to protein networks provides evolutionary insights. Science, 2006. 314(5807): p. 1938–41. https://doi.org/10.1126/science.1136174 PMID: 17185604
    • (2006) Science , vol.314 , Issue.5807 , pp. 1938-1941
    • Kim, P.M.1
  • 12
    • 79960617916 scopus 로고    scopus 로고
    • Structural principles within the human-virus protein-protein interaction network
    • 21680884
    • Franzosa E.A. and Xia Y., Structural principles within the human-virus protein-protein interaction network. Proc Natl Acad Sci U S A, 2011. 108(26): p. 10538–43. https://doi.org/10.1073/pnas. 1101440108 PMID: 21680884
    • (2011) Proc Natl Acad Sci U S A , vol.108 , Issue.26 , pp. 10538-10543
    • Franzosa, E.A.1    Xia, Y.2
  • 13
    • 84892876722 scopus 로고    scopus 로고
    • Signatures of pleiotropy, economy and convergent evolution in a domain-resolved map of human-virus protein-protein interaction networks
    • 24339775
    • Garamszegi S., Franzosa E.A., and Xia Y., Signatures of pleiotropy, economy and convergent evolution in a domain-resolved map of human-virus protein-protein interaction networks. PLoS Pathog, 2013. 9 (12): p. e1003778. https://doi.org/10.1371/journal.ppat.1003778 PMID: 24339775
    • (2013) Plos Pathog , vol.9 , Issue.12
    • Garamszegi, S.1    Franzosa, E.A.2    Xia, Y.3
  • 14
    • 84891799734 scopus 로고    scopus 로고
    • The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases
    • Database issue, 24234451
    • Orchard S., et al., The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases. Nucleic Acids Res, 2014. 42(Database issue): p. D358–63. https://doi.org/10.1093/nar/gkt1115 PMID: 24234451
    • (2014) Nucleic Acids Res , vol.42 , pp. D358-D363
    • Orchard, S.1
  • 15
    • 85018308823 scopus 로고    scopus 로고
    • HPIDB 2.0: A curated database for host-pathogen interactions
    • Ammari M.G., et al., HPIDB 2.0: a curated database for host-pathogen interactions. Database (Oxford), 2016. 2016.
    • (2016) Database (Oxford) , vol.2016
    • Ammari, M.G.1
  • 16
    • 58149200940 scopus 로고    scopus 로고
    • Human immunodeficiency virus type 1, human protein interaction database at NCBI
    • Database issue, PMID: 18927109
    • Fu W., et al., Human immunodeficiency virus type 1, human protein interaction database at NCBI. Nucleic Acids Res, 2009. 37(Database issue): p. D417–22. https://doi.org/10.1093/nar/gkn708PMID: 18927109
    • (2009) Nucleic Acids Res , vol.37 , pp. D417-D422
    • Fu, W.1
  • 17
    • 58149107292 scopus 로고    scopus 로고
    • Cataloguing the HIV type 1 human protein interaction network
    • 19025396
    • Ptak R.G., et al., Cataloguing the HIV type 1 human protein interaction network. AIDS Res Hum Retrovi-ruses, 2008. 24(12): p. 1497–502. https://doi.org/10.1089/aid.2008.0113 PMID: 19025396
    • (2008) AIDS Res Hum Retrovi-Ruses , vol.24 , Issue.12 , pp. 1497-1502
    • Ptak, R.G.1
  • 18
    • 63149177869 scopus 로고    scopus 로고
    • HIV-host interactions: A map of viral perturbation of the host system
    • 19262354
    • Pinney J.W., et al., HIV-host interactions: a map of viral perturbation of the host system. AIDS, 2009. 23(5): p. 549–54. https://doi.org/10.1097/QAD.0b013e328325a495 PMID: 19262354
    • (2009) AIDS , vol.23 , Issue.5 , pp. 549-554
    • Pinney, J.W.1
  • 19
    • 84891779335 scopus 로고    scopus 로고
    • 3did: A catalog of domain-based interactions of known three-dimensional structure
    • Database issue
    • Mosca R., et al., 3did: a catalog of domain-based interactions of known three-dimensional structure. Nucleic Acids Res, 2014. 42(Database issue): p. D374–9. https://doi.org/10.1093/nar/gkt887 PMID: 24081580
    • (2014) Nucleic Acids Res , vol.42 , pp. D374-D379
    • Mosca, R.1
  • 20
    • 84976897335 scopus 로고    scopus 로고
    • ELM 2016—data update and new functionality of the eukaryotic linear motif resource
    • 26615199
    • Dinkel H., et al., ELM 2016—data update and new functionality of the eukaryotic linear motif resource. Nucleic Acids Res, 2016. 44(D1): p. D294–300. https://doi.org/10.1093/nar/gkv1291 PMID: 26615199
    • (2016) Nucleic Acids Res , vol.44 , Issue.D1 , pp. D294-D300
    • Dinkel, H.1
  • 21
    • 84891796273 scopus 로고    scopus 로고
    • IPfam: A database of protein family and domain interactions found in the Protein Data Bank
    • et al, Database issue, PMID: 24297255
    • Finn R.D., et al., iPfam: a database of protein family and domain interactions found in the Protein Data Bank. Nucleic Acids Res, 2014. 42(Database issue): p. D364–73. https://doi.org/10.1093/nar/gkt1210 PMID: 24297255
    • (2014) Nucleic Acids Res , vol.42 , pp. D364-D373
    • Finn, R.D.1
  • 22
    • 0033954256 scopus 로고    scopus 로고
    • The Protein Data Bank
    • 10592235
    • Berman H.M., et al., The Protein Data Bank. Nucleic Acids Res, 2000. 28(1): p. 235–42. PMID: 10592235
    • (2000) Nucleic Acids Res , vol.28 , Issue.1 , pp. 235-242
    • Berman, H.M.1
  • 23
    • 84976865403 scopus 로고    scopus 로고
    • The Pfam protein families database: Towards a more sustainable future
    • 26673716
    • Finn R.D., et al., The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res, 2016. 44(D1): p. D279–85. https://doi.org/10.1093/nar/gkv1344 PMID: 26673716
    • (2016) Nucleic Acids Res , vol.44 , Issue.D1 , pp. D279-D285
    • Finn, R.D.1
  • 24
    • 84904406947 scopus 로고    scopus 로고
    • Genetic variations and diseases in UniProtKB/Swiss-Prot: The ins and outs of expert manual curation
    • 24848695
    • Famiglietti M.L., et al., Genetic variations and diseases in UniProtKB/Swiss-Prot: the ins and outs of expert manual curation. Hum Mutat, 2014. 35(8): p. 927–35. https://doi.org/10.1002/humu.22594 PMID: 24848695
    • (2014) Hum Mutat , vol.35 , Issue.8 , pp. 927-935
    • Famiglietti, M.L.1
  • 25
    • 84976904305 scopus 로고    scopus 로고
    • ClinVar: Public archive of interpretations of clinically relevant variants
    • 26582918
    • Landrum M.J., et al., ClinVar: public archive of interpretations of clinically relevant variants. Nucleic Acids Res, 2016. 44(D1): p. D862–8. https://doi.org/10.1093/nar/gkv1222 PMID: 26582918
    • (2016) Nucleic Acids Res , vol.44 , Issue.D1 , pp. D862-D868
    • Landrum, M.J.1
  • 26
    • 0034614637 scopus 로고    scopus 로고
    • The hallmarks of cancer
    • 10647931
    • Hanahan D. and Weinberg R.A., The hallmarks of cancer. Cell, 2000. 100(1): p. 57–70. PMID: 10647931
    • (2000) Cell , vol.100 , Issue.1 , pp. 57-70
    • Hanahan, D.1    Weinberg, R.A.2
  • 27
    • 84896088630 scopus 로고    scopus 로고
    • Human viral oncogenesis: A cancer hallmarks analysis
    • 24629334
    • Mesri E.A., Feitelson M.A., and Munger K., Human viral oncogenesis: a cancer hallmarks analysis. Cell Host Microbe, 2014. 15(3): p. 266–82. https://doi.org/10.1016/j.chom.2014.02.011 PMID: 24629334
    • (2014) Cell Host Microbe , vol.15 , Issue.3 , pp. 266-282
    • Mesri, E.A.1    Feitelson, M.A.2    Munger, K.3
  • 28
    • 49749222804 scopus 로고
    • Virus Particles in Cultured Lymphoblasts from Burkitt’s Lymphoma
    • 14107961
    • Epstein M.A., Achong B.G., and Barr Y.M., Virus Particles in Cultured Lymphoblasts from Burkitt’s Lymphoma. Lancet, 1964. 1(7335): p. 702–3. PMID: 14107961
    • (1964) Lancet , vol.1 , Issue.7335 , pp. 702-703
    • Epstein, M.A.1    Achong, B.G.2    Barr, Y.M.3
  • 29
    • 84969921355 scopus 로고    scopus 로고
    • Identification and Characterization of Epstein-Barr Virus Genomes in Lung Carcinoma Biopsy Samples by Next-Generation Sequencing Technology
    • 27189712
    • Wang S., et al., Identification and Characterization of Epstein-Barr Virus Genomes in Lung Carcinoma Biopsy Samples by Next-Generation Sequencing Technology. Sci Rep, 2016. 6: p. 26156. https://doi. org/10.1038/srep26156 PMID: 27189712
    • (2016) Sci Rep , vol.6 , pp. 26156
    • Wang, S.1
  • 30
    • 84856074205 scopus 로고    scopus 로고
    • EBV-associated T/NK-cell lymphoproliferative diseases in nonimmunocompromised hosts: Prospective analysis of 108 cases
    • Kimura H., et al., EBV-associated T/NK-cell lymphoproliferative diseases in nonimmunocompromised hosts: prospective analysis of 108 cases. Blood, 2012. 119(3): p. 673–86. https://doi.org/10.1182/blood-2011-10-381921 PMID: 22096243
    • (2012) Blood , vol.119 , Issue.3 , pp. 673-686
    • Kimura, H.1
  • 31
    • 84909969283 scopus 로고    scopus 로고
    • The interplay of host genetic factors and Epstein-Barr virus in the development of nasopharyngeal carcinoma
    • 25367335
    • Lung M.L., et al., The interplay of host genetic factors and Epstein-Barr virus in the development of nasopharyngeal carcinoma. Chin J Cancer, 2014. 33(11): p. 556–68. https://doi.org/10.5732/cjc.014. 10170 PMID: 25367335
    • (2014) Chin J Cancer , vol.33 , Issue.11 , pp. 556-568
    • Lung, M.L.1
  • 32
    • 50149120544 scopus 로고    scopus 로고
    • Epstein-Barr virus and gastric carcinoma: Virus-host interactions leading to carcinoma
    • 18616681
    • Fukayama M., Hino R., and Uozaki H., Epstein-Barr virus and gastric carcinoma: virus-host interactions leading to carcinoma. Cancer Sci, 2008. 99(9): p. 1726–33. https://doi.org/10.1111/j.1349-7006.2008. 00888.x PMID: 18616681
    • (2008) Cancer Sci , vol.99 , Issue.9 , pp. 1726-1733
    • Fukayama, M.1    Hino, R.2    Uozaki, H.3
  • 33
    • 34548497655 scopus 로고    scopus 로고
    • Human papillomavirus and cervical cancer
    • 17826171
    • Schiffman M., et al., Human papillomavirus and cervical cancer. Lancet, 2007. 370(9590): p. 890–907. https://doi.org/10.1016/S0140-6736(07)61416-0 PMID: 17826171
    • (2007) Lancet , vol.370 , Issue.9590 , pp. 890-907
    • Schiffman, M.1
  • 34
    • 85015175312 scopus 로고    scopus 로고
    • Analysis of The Cancer Genome Atlas sequencing data reveals novel properties of the human papillomavirus 16 genome in head and neck squamous cell carcinoma
    • PMID: 28187443
    • Nulton T.J., et al., Analysis of The Cancer Genome Atlas sequencing data reveals novel properties of the human papillomavirus 16 genome in head and neck squamous cell carcinoma. Oncotarget, 2017. 8 (11): p. 17684–17699. https://doi.org/10.18632/oncotarget.15179 PMID: 28187443
    • (2017) Oncotarget , vol.8 , Issue.11 , pp. 17684-17699
    • Nulton, T.J.1
  • 35
    • 84876418361 scopus 로고    scopus 로고
    • Updating the natural history of human papillomavirus and anogenital cancers
    • Moscicki A.B., et al., Updating the natural history of human papillomavirus and anogenital cancers. Vaccine, 2012. 30 Suppl 5: p. F24–33.
    • (2012) Vaccine , vol.30 , pp. F24-F33
    • Moscicki, A.B.1
  • 36
    • 79958748194 scopus 로고    scopus 로고
    • Human papillomavirus infection and bladder cancer risk: A meta-analysis
    • 21673031
    • Li N., et al., Human papillomavirus infection and bladder cancer risk: a meta-analysis. J Infect Dis, 2011. 204(2): p. 217–23. https://doi.org/10.1093/infdis/jir248 PMID: 21673031
    • (2011) J Infect Dis , vol.204 , Issue.2 , pp. 217-223
    • Li, N.1
  • 37
    • 79958738901 scopus 로고    scopus 로고
    • Human papillomavirus infection and sporadic breast carcinoma risk: A meta-analysis
    • 20740311
    • Li N., et al., Human papillomavirus infection and sporadic breast carcinoma risk: a meta-analysis. Breast Cancer Res Treat, 2011. 126(2): p. 515–20. https://doi.org/10.1007/s10549-010-1128-0 PMID: 20740311
    • (2011) Breast Cancer Res Treat , vol.126 , Issue.2 , pp. 515-520
    • Li, N.1
  • 38
    • 67349277104 scopus 로고    scopus 로고
    • Incidence of human papilloma virus in lung cancer
    • Klein F., Amin Kotb W.F., and Petersen I., Incidence of human papilloma virus in lung cancer. Lung Cancer, 2009. 65(1): p. 13–8. https://doi.org/10.1016/j.lungcan.2008.10.003PMID: 19019488
    • (2009) Lung Cancer , vol.65 , Issue.1 , pp. 13-18
    • Klein, F.1    Amin Kotb, W.F.2    Petersen, I.3
  • 39
    • 84929694497 scopus 로고    scopus 로고
    • Implication of high risk human papillomavirus HR-HPV infection in prostate cancer in Indian population—a pioneering case-control analysis
    • 25592643
    • Singh N., et al., Implication of high risk human papillomavirus HR-HPV infection in prostate cancer in Indian population—a pioneering case-control analysis. Sci Rep, 2015. 5: p. 7822. https://doi.org/10. 1038/srep07822 PMID: 25592643
    • (2015) Sci Rep , vol.5 , pp. 7822
    • Singh, N.1
  • 40
    • 55249101754 scopus 로고    scopus 로고
    • HIV-induced immunodeficiency and mortality from AIDS-defining and non-AIDS-defining malignancies
    • 18832878
    • Monforte A., et al., HIV-induced immunodeficiency and mortality from AIDS-defining and non-AIDS-defining malignancies. AIDS, 2008. 22(16): p. 2143–53. https://doi.org/10.1097/QAD. 0b013e3283112b77 PMID: 18832878
    • (2008) AIDS , vol.22 , Issue.16 , pp. 2143-2153
    • Monforte, A.1
  • 41
    • 34347323902 scopus 로고    scopus 로고
    • Incidence of cancers in people with HIV/AIDS compared with immunosuppressed transplant recipients: A meta-analysis
    • 17617273
    • Grulich A.E., et al., Incidence of cancers in people with HIV/AIDS compared with immunosuppressed transplant recipients: a meta-analysis. Lancet, 2007. 370(9581): p. 59–67.https://doi.org/10.1016/S0140-6736(07)61050-2 PMID: 17617273
    • (2007) Lancet , vol.370 , Issue.9581 , pp. 59-67
    • Grulich, A.E.1
  • 42
    • 0142088865 scopus 로고    scopus 로고
    • Interaction between HIV-1 Tat and pRb2/p130: A possible mechanism in the pathogenesis of AIDS-related neoplasms
    • 13679860
    • De Falco G., et al., Interaction between HIV-1 Tat and pRb2/p130: a possible mechanism in the pathogenesis of AIDS-related neoplasms. Oncogene, 2003. 22(40): p. 6214–9. https://doi.org/10.1038/sj.onc.1206637 PMID: 13679860
    • (2003) Oncogene , vol.22 , Issue.40 , pp. 6214-6219
    • de Falco, G.1
  • 43
    • 53149105513 scopus 로고    scopus 로고
    • HIV-1 Tat and AIDS-associated cancer: Targeting the cellular anti-cancer barrier?
    • 18577246
    • Nunnari G., Smith J.A., and Daniel R., HIV-1 Tat and AIDS-associated cancer: targeting the cellular anti-cancer barrier? J Exp Clin Cancer Res, 2008. 27: p. 3. https://doi.org/10.1186/1756-9966-27-3 PMID: 18577246
    • (2008) J Exp Clin Cancer Res , vol.27 , pp. 3
    • Nunnari, G.1    Smith, J.A.2    Daniel, R.3
  • 44
    • 0030792141 scopus 로고    scopus 로고
    • SH3-mediated Hck tyrosine kinase activation and fibroblast transformation by the Nef protein of HIV-1
    • 9218412
    • Briggs S.D., et al., SH3-mediated Hck tyrosine kinase activation and fibroblast transformation by the Nef protein of HIV-1. J Biol Chem, 1997. 272(29): p. 17899–902. PMID: 9218412
    • (1997) J Biol Chem , vol.272 , Issue.29 , pp. 17899-17902
    • Briggs, S.D.1
  • 45
    • 0037056082 scopus 로고    scopus 로고
    • Cardiovascular manifestations of HIV infection
    • 12221062
    • Barbaro G., Cardiovascular manifestations of HIV infection. Circulation, 2002. 106(11): p. 1420–5. PMID: 12221062
    • (2002) Circulation , vol.106 , Issue.11 , pp. 1420-1425
    • Barbaro, G.1
  • 46
    • 0033937338 scopus 로고    scopus 로고
    • Impact of highly active antiretroviral therapy in HIV-positive patients with cardiac involvement
    • PMID: 10908024
    • Pugliese A., et al., Impact of highly active antiretroviral therapy in HIV-positive patients with cardiac involvement. J Infect, 2000. 40(3): p. 282–4. https://doi.org/10.1053/jinf.2000.0672 PMID: 10908024
    • (2000) J Infect , vol.40 , Issue.3 , pp. 282-284
    • Pugliese, A.1
  • 47
    • 0032102076 scopus 로고    scopus 로고
    • Cardiac manifestations of HIV/AIDS: A review of disease spectrum and clinical management
    • 9637579
    • Yunis N.A. and Stone V.E., Cardiac manifestations of HIV/AIDS: a review of disease spectrum and clinical management. J Acquir Immune Defic Syndr Hum Retrovirol, 1998. 18(2): p. 145–54. PMID: 9637579
    • (1998) J Acquir Immune Defic Syndr Hum Retrovirol , vol.18 , Issue.2 , pp. 145-154
    • Yunis, N.A.1    Stone, V.E.2
  • 48
    • 0035936629 scopus 로고    scopus 로고
    • Parkinsonism as the presenting manifestation of HIV infection: Improvement on HAART
    • 11160977
    • Hersh B.P., Rajendran P.R., and Battinelli D., Parkinsonism as the presenting manifestation of HIV infection: improvement on HAART. Neurology, 2001. 56(2): p. 278–9. PMID: 11160977
    • (2001) Neurology , vol.56 , Issue.2 , pp. 278-279
    • Hersh, B.P.1    Rajendran, P.R.2    Battinelli, D.3
  • 49
    • 0036322227 scopus 로고    scopus 로고
    • Parkinsonism in HIV dementia
    • Koutsilieri E., et al., Parkinsonism in HIV dementia. J Neural Transm (Vienna), 2002. 109(5–6): p. 767– 75.
    • (2002) J Neural Transm (Vienna) , vol.109 , Issue.5-6 , pp. 767-775
    • Koutsilieri, E.1
  • 50
    • 0031824492 scopus 로고    scopus 로고
    • Parkinsonism with HIV infection
    • 9686775
    • Mirsattari S.M., Power C., and Nath A., Parkinsonism with HIV infection. Mov Disord, 1998. 13(4): p. 684–9. https://doi.org/10.1002/mds.870130413 PMID: 9686775
    • (1998) Mov Disord , vol.13 , Issue.4 , pp. 684-689
    • Mirsattari, S.M.1    Power, C.2    Nath, A.3
  • 51
    • 84964265139 scopus 로고    scopus 로고
    • Tuning of AKT-pathway by Nef and its blockade by protease inhibitors results in limited recovery in latently HIV infected T-cell line
    • 27076174
    • Kumar A., et al., Tuning of AKT-pathway by Nef and its blockade by protease inhibitors results in limited recovery in latently HIV infected T-cell line. Sci Rep, 2016. 6: p. 24090. https://doi.org/10.1038/srep24090 PMID: 27076174
    • (2016) Sci Rep , vol.6 , pp. 24090
    • Kumar, A.1
  • 52
    • 0345257290 scopus 로고    scopus 로고
    • Epstein-Barr Virus (EBV) LMP2A induces alterations in gene transcription similar to those observed in Reed-Sternberg cells of Hodgkin lymphoma
    • 12907455
    • Portis T., Dyck P., and Longnecker R.,Epstein-Barr Virus (EBV) LMP2A induces alterations in gene transcription similar to those observed in Reed-Sternberg cells of Hodgkin lymphoma. Blood, 2003. 102(12): p. 4166–78. https://doi.org/10.1182/blood-2003-04-1018 PMID: 12907455
    • (2003) Blood , vol.102 , Issue.12 , pp. 4166-4178
    • Portis, T.1    Dyck, P.2    Longnecker, R.3
  • 53
    • 84870951604 scopus 로고    scopus 로고
    • HIV-1 Nef in macrophage-mediated disease pathogenesis
    • PMID: 23215766
    • Lamers S.L., et al., HIV-1 Nef in macrophage-mediated disease pathogenesis. Int Rev Immunol, 2012. 31(6): p. 432–50. https://doi.org/10.3109/08830185.2012.737073 PMID: 23215766
    • (2012) Int Rev Immunol , vol.31 , Issue.6 , pp. 432-450
    • Lamers, S.L.1
  • 54
    • 84996606587 scopus 로고    scopus 로고
    • Global burden of cancers attributable to infections in 2012: A synthetic analysis
    • 27470177
    • Plummer M., et al., Global burden of cancers attributable to infections in 2012: a synthetic analysis. Lancet Glob Health, 2016. 4(9): p. e609–16. https://doi.org/10.1016/S2214-109X(16)30143-7 PMID: 27470177
    • (2016) Lancet Glob Health , vol.4 , Issue.9 , pp. e609-e616
    • Plummer, M.1
  • 55
    • 84866347303 scopus 로고    scopus 로고
    • Retroviral oncogenes: A historical primer
    • 22898541
    • Vogt P.K., Retroviral oncogenes: a historical primer. Nat Rev Cancer, 2012. 12(9): p. 639–48. https://doi.org/10.1038/nrc3320 PMID: 22898541
    • (2012) Nat Rev Cancer , vol.12 , Issue.9 , pp. 639-648
    • Vogt, P.K.1
  • 56
    • 70350503061 scopus 로고    scopus 로고
    • Immune control of mammalian gamma-herpesviruses: Lessons from murid herpesvirus-4
    • Pt 10, 19605591
    • Stevenson P.G., Simas J.P., and Efstathiou S., Immune control of mammalian gamma-herpesviruses: lessons from murid herpesvirus-4. J Gen Virol, 2009. 90(Pt 10): p. 2317–30. https://doi.org/10.1099/vir. 0.013300-0 PMID: 19605591
    • (2009) J Gen Virol , vol.90 , pp. 2317-2330
    • Stevenson, P.G.1    Simas, J.P.2    Efstathiou, S.3
  • 57
    • 0020328955 scopus 로고
    • Human EJ bladder carcinoma oncogene is homologue of Harvey sarcoma virus ras gene
    • 6283357
    • Parada L.F., et al., Human EJ bladder carcinoma oncogene is homologue of Harvey sarcoma virus ras gene. Nature, 1982. 297(5866): p. 474–8. PMID: 6283357
    • (1982) Nature , vol.297 , Issue.5866 , pp. 474-478
    • Parada, L.F.1
  • 58
    • 84964804054 scopus 로고    scopus 로고
    • Cancers attributable to infections among adults with HIV in the United States
    • 26182198
    • de Martel C., et al., Cancers attributable to infections among adults with HIV in the United States. AIDS, 2015. 29(16): p. 2173–81. https://doi.org/10.1097/QAD.0000000000000808 PMID: 26182198
    • (2015) AIDS , vol.29 , Issue.16 , pp. 2173-2181
    • de Martel, C.1
  • 59
    • 5344221041 scopus 로고    scopus 로고
    • Viral Infections in Juvenile Myelomonocytic Leukemia: Prevalence and Clinical Implications
    • Manabe A., et al., Viral Infections in Juvenile Myelomonocytic Leukemia: Prevalence and Clinical Implications. J Pediatr Hematol Oncol, 2004. 26(10): p. 636–641.
    • (2004) J Pediatr Hematol Oncol , vol.26 , Issue.10 , pp. 636-641
    • Manabe, A.1
  • 60
    • 43449083229 scopus 로고    scopus 로고
    • Recent advances in the pathogenesis and management of juvenile myelomonocytic leukaemia
    • 18422786
    • Koike K. and Matsuda K., Recent advances in the pathogenesis and management of juvenile myelomonocytic leukaemia. Br J Haematol, 2008. 141(5): p. 567–75. https://doi.org/10.1111/j.1365-2141.2008. 07104.x PMID: 18422786
    • (2008) Br J Haematol , vol.141 , Issue.5 , pp. 567-575
    • Koike, K.1    Matsuda, K.2
  • 61
    • 84995920353 scopus 로고    scopus 로고
    • EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR
    • 27839865
    • Kaplan M., et al., EGFR Dynamics Change during Activation in Native Membranes as Revealed by NMR. Cell, 2016. 167(5): p. 1241–1251 e11. https://doi.org/10.1016/j.cell.2016.10.038 PMID: 27839865
    • (2016) Cell , vol.167 , Issue.5 , pp. 1241-1251
    • Kaplan, M.1
  • 62
    • 85038258025 scopus 로고    scopus 로고
    • Activation of the EGF Receptor by Ligand Binding and Oncogenic Mutations: The "Rotation Model"
    • Purba E.R., Saita E.I., and Maruyama I.N., Activation of the EGF Receptor by Ligand Binding and Oncogenic Mutations: The "Rotation Model". Cells, 2017. 6(2).
    • (2017) Cells , vol.6 , Issue.2
    • Purba, E.R.1    Saita, E.I.2    Maruyama, I.N.3
  • 63
    • 70949087383 scopus 로고    scopus 로고
    • Inflammatory bowel disease and mutations affecting the interleukin-10 receptor
    • 19890111
    • Glocker E.O., et al., Inflammatory bowel disease and mutations affecting the interleukin-10 receptor. N Engl J Med, 2009. 361(21): p. 2033–45. https://doi.org/10.1056/NEJMoa0907206 PMID: 19890111
    • (2009) N Engl J Med , vol.361 , Issue.21 , pp. 2033-2045
    • Glocker, E.O.1
  • 64
    • 70349275250 scopus 로고    scopus 로고
    • Virus-encoded homologs of cellular interleukin-10 and their control of host immune function
    • 19640997
    • Slobedman B., et al., Virus-encoded homologs of cellular interleukin-10 and their control of host immune function. J Virol, 2009. 83(19): p. 9618–29. https://doi.org/10.1128/JVI.01098-09 PMID: 19640997
    • (2009) J Virol , vol.83 , Issue.19 , pp. 9618-9629
    • Slobedman, B.1
  • 65
    • 0031667550 scopus 로고    scopus 로고
    • Lipid-mediated gene transfer of viral IL-10 prolongs vascularized cardiac allograft survival by inhibiting donor-specific cellular and humoral immune responses
    • 10326031
    • DeBruyne L.A., et al., Lipid-mediated gene transfer of viral IL-10 prolongs vascularized cardiac allograft survival by inhibiting donor-specific cellular and humoral immune responses. Gene Ther, 1998. 5(8): p. 1079–87. https://doi.org/10.1038/sj.gt.3300694 PMID: 10326031
    • (1998) Gene Ther , vol.5 , Issue.8 , pp. 1079-1087
    • Debruyne, L.A.1
  • 66
    • 84938980634 scopus 로고    scopus 로고
    • IL10 receptor is a novel therapeutic target in DLBCLs
    • 25733167
    • Beguelin W., et al., IL10 receptor is a novel therapeutic target in DLBCLs. Leukemia, 2015. 29(8): p. 1684–94. https://doi.org/10.1038/leu.2015.57 PMID: 25733167
    • (2015) Leukemia , vol.29 , Issue.8 , pp. 1684-1694
    • Beguelin, W.1
  • 67
    • 77954990257 scopus 로고    scopus 로고
    • Role of the Kaposi’s sarcoma-associated herpesvirus K15 SH3 binding site in inflammatory signaling and B-cell activation
    • 20534855
    • Pietrek M., et al., Role of the Kaposi’s sarcoma-associated herpesvirus K15 SH3 binding site in inflammatory signaling and B-cell activation. J Virol, 2010. 84(16): p. 8231–40. https://doi.org/10.1128/JVI. 01696-09 PMID: 20534855
    • (2010) J Virol , vol.84 , Issue.16 , pp. 8231-8240
    • Pietrek, M.1
  • 68
    • 0041513490 scopus 로고    scopus 로고
    • C-SRC tyrosine kinase activity is associated with tumor colonization in bone and lung in an animal model of human breast cancer metastasis
    • 12941830
    • Myoui A., et al., C-SRC tyrosine kinase activity is associated with tumor colonization in bone and lung in an animal model of human breast cancer metastasis. Cancer Res, 2003. 63(16): p. 5028–33. PMID: 12941830
    • (2003) Cancer Res , vol.63 , Issue.16 , pp. 5028-5033
    • Myoui, A.1
  • 69
    • 84866410479 scopus 로고    scopus 로고
    • Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing
    • 22980975
    • Imielinski M., et al., Mapping the hallmarks of lung adenocarcinoma with massively parallel sequencing. Cell, 2012. 150(6): p. 1107–20. https://doi.org/10.1016/j.cell.2012.08.029 PMID: 22980975
    • (2012) Cell , vol.150 , Issue.6 , pp. 1107-1120
    • Imielinski, M.1
  • 70
    • 0028332032 scopus 로고
    • Polyoma middle tumor antigen interacts with SHC protein via the NPTY (Asn-Pro-Thr-Tyr) motif in middle tumor antigen
    • 8022784
    • Campbell K.S., et al., Polyoma middle tumor antigen interacts with SHC protein via the NPTY (Asn-Pro-Thr-Tyr) motif in middle tumor antigen. Proc Natl Acad Sci U S A, 1994. 91(14): p. 6344–8. PMID: 8022784
    • (1994) Proc Natl Acad Sci U S A , vol.91 , Issue.14 , pp. 6344-6348
    • Campbell, K.S.1
  • 71
    • 84880871624 scopus 로고    scopus 로고
    • The ShcA PTB domain functions as a biological sensor of phosphotyrosine signaling during breast cancer progression
    • 23695548
    • Ahn R., et al., The ShcA PTB domain functions as a biological sensor of phosphotyrosine signaling during breast cancer progression. Cancer Res, 2013. 73(14): p. 4521–32. https://doi.org/10.1158/0008-5472.CAN-12-4178 PMID: 23695548
    • (2013) Cancer Res , vol.73 , Issue.14 , pp. 4521-4532
    • Ahn, R.1
  • 72
    • 63449121941 scopus 로고    scopus 로고
    • The nucleocapsid region of HIV-1 Gag cooperates with the PTAP and LYPXnL late domains to recruit the cellular machinery necessary for viral budding
    • Dussupt V., et al., The nucleocapsid region of HIV-1 Gag cooperates with the PTAP and LYPXnL late domains to recruit the cellular machinery necessary for viral budding. PLoS Pathog, 2009. 5(3): p. e1000339. https://doi.org/10.1371/journal.ppat.1000339 PMID: 19282983
    • (2009) Plos Pathog , vol.5 , Issue.3
    • Dussupt, V.1
  • 73
    • 35648941223 scopus 로고    scopus 로고
    • The tyrosine phosphatase HD-PTP: A novel player in endothelial migration
    • 17959146
    • Castiglioni S., Maier J.A., and Mariotti M., The tyrosine phosphatase HD-PTP: A novel player in endothelial migration. Biochem Biophys Res Commun, 2007. 364(3): p. 534–9. https://doi.org/10.1016/j. bbrc.2007.10.022 PMID: 17959146
    • (2007) Biochem Biophys Res Commun , vol.364 , Issue.3 , pp. 534-539
    • Castiglioni, S.1    Maier, J.A.2    Mariotti, M.3
  • 74
    • 84971267990 scopus 로고    scopus 로고
    • Haploinsufficiency of the ESCRT Component HD-PTP Predisposes to Cancer
    • 27210750
    • Manteghi S., et al., Haploinsufficiency of the ESCRT Component HD-PTP Predisposes to Cancer. Cell Rep, 2016. 15(9): p. 1893–900. https://doi.org/10.1016/j.celrep.2016.04.076 PMID: 27210750
    • (2016) Cell Rep , vol.15 , Issue.9 , pp. 1893-1900
    • Manteghi, S.1
  • 75
    • 64749094310 scopus 로고    scopus 로고
    • The cancer genome
    • 19360079
    • Stratton M.R., Campbell P.J., and Futreal P.A., The cancer genome. Nature, 2009. 458(7239): p. 719– 24. https://doi.org/10.1038/nature07943 PMID: 19360079
    • (2009) Nature , vol.458 , Issue.7239 , pp. 719-724
    • Stratton, M.R.1    Campbell, P.J.2    Futreal, P.A.3
  • 76
    • 85016154270 scopus 로고    scopus 로고
    • COSMIC: Somatic cancer genetics at high-resolution
    • 27899578
    • Forbes S.A., et al., COSMIC: somatic cancer genetics at high-resolution. Nucleic Acids Res, 2017. 45 (D1): p. D777–D783. https://doi.org/10.1093/nar/gkw1121 PMID: 27899578
    • (2017) Nucleic Acids Res , vol.45 , Issue.D1 , pp. D777-D783
    • Forbes, S.A.1
  • 77
    • 33644550021 scopus 로고    scopus 로고
    • Structural systems biology: Modelling protein interactions
    • 16496021
    • Aloy P. and Russell R.B., Structural systems biology: modelling protein interactions. Nat Rev Mol Cell Biol, 2006. 7(3): p. 188–97. https://doi.org/10.1038/nrm1859 PMID: 16496021
    • (2006) Nat Rev Mol Cell Biol , vol.7 , Issue.3 , pp. 188-197
    • Aloy, P.1    Russell, R.B.2
  • 78
    • 42349100920 scopus 로고    scopus 로고
    • KSHV-transformed primary effusion lymphoma cells induce a VEGF-dependent angiogenesis and establish functional gap junctions with endothelial cells
    • 18094712
    • Haddad L., et al., KSHV-transformed primary effusion lymphoma cells induce a VEGF-dependent angiogenesis and establish functional gap junctions with endothelial cells. Leukemia, 2008. 22(4): p. 826–34. https://doi.org/10.1038/sj.leu.2405081 PMID: 18094712
    • (2008) Leukemia , vol.22 , Issue.4 , pp. 826-834
    • Haddad, L.1
  • 79
    • 33645748053 scopus 로고    scopus 로고
    • NF-kappaB is essential for the progression of KSHV-and EBV-infected lymphomas in vivo
    • 16380446
    • Keller S.A., et al., NF-kappaB is essential for the progression of KSHV-and EBV-infected lymphomas in vivo. Blood, 2006. 107(8): p. 3295–302. https://doi.org/10.1182/blood-2005-07-2730 PMID: 16380446
    • (2006) Blood , vol.107 , Issue.8 , pp. 3295-3302
    • Keller, S.A.1
  • 80
    • 49149098054 scopus 로고    scopus 로고
    • A meta-analysis of nonsense mutations causing human genetic disease
    • 18454449
    • Mort M., et al., A meta-analysis of nonsense mutations causing human genetic disease. Hum Mutat, 2008. 29(8): p. 1037–47. https://doi.org/10.1002/humu.20763 PMID: 18454449
    • (2008) Hum Mutat , vol.29 , Issue.8 , pp. 1037-1047
    • Mort, M.1
  • 81
    • 84899518211 scopus 로고    scopus 로고
    • InterProScan 5: Genome-scale protein function classification
    • 24451626
    • Jones P., et al., InterProScan 5: genome-scale protein function classification. Bioinformatics, 2014. 30 (9): p. 1236–40. https://doi.org/10.1093/bioinformatics/btu031 PMID: 24451626
    • (2014) Bioinformatics , vol.30 , Issue.9 , pp. 1236-1240
    • Jones, P.1
  • 82
    • 84973338712 scopus 로고    scopus 로고
    • The Ensembl Variant Effect Predictor
    • PMID: 27268795
    • McLaren W., et al., The Ensembl Variant Effect Predictor. Genome Biol, 2016. 17(1): p. 122. https://doi.org/10.1186/s13059-016-0974-4PMID: 27268795
    • (2016) Genome Biol , vol.17 , Issue.1 , pp. 122
    • McLaren, W.1
  • 83
    • 84941103725 scopus 로고    scopus 로고
    • Disease Ontology 2015 update: An expanded and updated database of human diseases for linking biomedical knowledge through disease data
    • Database issue, D1071–8
    • Kibbe W.A., et al., Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. Nucleic Acids Res, 2015. 43(Database issue): p. D1071–8. https://doi.org/10.1093/nar/gku1011 PMID: 25348409
    • (2015) Nucleic Acids Res , Issue.43
    • Kibbe, W.A.1
  • 84
    • 84864358886 scopus 로고    scopus 로고
    • Representation of rare diseases in health information systems: The Orphanet approach to serve a wide range of end users
    • 22422702
    • Rath A., et al., Representation of rare diseases in health information systems: the Orphanet approach to serve a wide range of end users. Hum Mutat, 2012. 33(5): p. 803–8. https://doi.org/10.1002/humu. 22078 PMID: 22422702
    • (2012) Hum Mutat , vol.33 , Issue.5 , pp. 803-808
    • Rath, A.1
  • 86
    • 84897873840 scopus 로고    scopus 로고
    • Protter: Interactive protein feature visualization and integration with experimental proteomic data
    • 24162465
    • Omasits U., et al., Protter: interactive protein feature visualization and integration with experimental proteomic data. Bioinformatics, 2014. 30(6): p. 884–6. https://doi.org/10.1093/bioinformatics/btt607 PMID: 24162465
    • (2014) Bioinformatics , vol.30 , Issue.6 , pp. 884-886
    • Omasits, U.1
  • 87
    • 85016141786 scopus 로고    scopus 로고
    • InterPro in 2017-beyond protein family and domain annotations
    • 27899635
    • Finn R.D., et al., InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Res, 2017. 45(D1): p. D190–D199. https://doi.org/10.1093/nar/gkw1107 PMID: 27899635
    • (2017) Nucleic Acids Res , vol.45 , Issue.D1 , pp. D190-D199
    • Finn, R.D.1
  • 88
    • 78149276744 scopus 로고    scopus 로고
    • Permutation P-values should never be zero: Calculating exact P-values when permutations are randomly drawn
    • Phipson B. and Smyth G.K., Permutation P-values should never be zero: calculating exact P-values when permutations are randomly drawn. Stat Appl Genet Mol Biol, 2010. 9: p. Article 39.
    • (2010) Stat Appl Genet Mol Biol , pp. 9
    • Phipson, B.1    Smyth, G.K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.