-
1
-
-
0034518145
-
T(E)Xtopo: Shaded membrane protein topology plots in LAT(E)X2epsilon
-
Beitz, E. (2000) T(E)Xtopo: shaded membrane protein topology plots in LAT(E)X2epsilon. Bioinformatics, 16, 1050-1051.
-
(2000)
Bioinformatics
, vol.16
, pp. 1050-1051
-
-
Beitz, E.1
-
2
-
-
84859222359
-
CD proteome and beyond-Technologies for targeting the immune cell surfaceome
-
Bock, T. et al. (2012) CD proteome and beyond-Technologies for targeting the immune cell surfaceome. Front. Biosci., 17, 1599-1612.
-
(2012)
Front. Biosci.
, vol.17
, pp. 1599-1612
-
-
Bock, T.1
-
3
-
-
57449099865
-
MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
-
Cox, J. and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol., 26, 1367-1372.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1367-1372
-
-
Cox, J.1
Mann, M.2
-
4
-
-
77449108855
-
The peptideatlas project
-
Deutsch, E.W. et al. (2010) The PeptideAtlas Project. Methods Mol. Biol., 604, 285-296.
-
(2010)
Methods Mol. Biol.
, vol.604
, pp. 285-296
-
-
Deutsch, E.W.1
-
5
-
-
84867380614
-
Direct identification of ligand-receptor interactions on living cells and tissues
-
Frei, A.P. et al. (2012) Direct identification of ligand-receptor interactions on living cells and tissues. Nat. Biotechnol., 30, 997-1001.
-
(2012)
Nat. Biotechnol.
, vol.30
, pp. 997-1001
-
-
Frei, A.P.1
-
6
-
-
77649252269
-
Visualization of omics data for systems biology
-
Gehlenborg, N. et al. (2010) Visualization of omics data for systems biology. Nat. Methods, 7, S56-S68.
-
(2010)
Nat. Methods
, vol.7
-
-
Gehlenborg, N.1
-
7
-
-
34249739711
-
The membrane protein universe: What's out there and why bother?
-
von Heijne, G. (2007) The membrane protein universe: what's out there and why bother? J. Intern. Med., 6, 543-557.
-
(2007)
J. Intern. Med.
, vol.6
, pp. 543-557
-
-
Von Heijne, G.1
-
8
-
-
84875969679
-
N-glycoprotein SRMAtlas: A resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications
-
Huttenhain, R. et al. (2013) N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications. Mol. Cell. Proteomics, 12, 1005-1016.
-
(2013)
Mol. Cell. Proteomics
, vol.12
, pp. 1005-1016
-
-
Huttenhain, R.1
-
9
-
-
34547584314
-
Advantages of combined transmembrane topology and signal peptide prediction-The Phobius web server
-
Kall, L. et al. (2007) Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server. Nucleic Acids Res., 35, W429-W432.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Kall, L.1
-
10
-
-
0037108887
-
Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
-
Keller, A. et al. (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem., 74, 5383-5392.
-
(2002)
Anal. Chem.
, vol.74
, pp. 5383-5392
-
-
Keller, A.1
-
11
-
-
84862187489
-
NeXtProt: A knowledge platform for human proteins
-
Lane, L. et al. (2011) neXtProt: a knowledge platform for human proteins. Nucleic Acids Res., 40, D76-D83.
-
(2011)
Nucleic Acids Res.
, vol.40
-
-
Lane, L.1
-
12
-
-
54049090766
-
Selected reaction monitoring for quantitative proteomics: A tutorial
-
Lange, L. et al. (2008) Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol., 4, 222.
-
(2008)
Mol. Syst. Biol.
, vol.4
, pp. 222
-
-
Lange, L.1
-
13
-
-
77951965920
-
Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
-
MacLean, B. et al. (2010) Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics, 26, 966-968.
-
(2010)
Bioinformatics
, vol.26
, pp. 966-968
-
-
Maclean, B.1
-
14
-
-
79960976768
-
UniProt Knowledgebase: A hub of integrated protein data
-
Magrane, M. et al. (2011) UniProt Knowledgebase: a hub of integrated protein data. Database, 2011, bar009.
-
(2011)
Database
, vol.2011
-
-
Magrane, M.1
-
15
-
-
84875404794
-
The UCSC Genome Browser database: Extensions and updates 2013
-
Meyer, L.R. et al. (2012) The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res., 41, D64-D69.
-
(2012)
Nucleic Acids Res.
, vol.41
-
-
Meyer, L.R.1
-
16
-
-
0042338362
-
A statistical model for identifying proteins by tandem mass spectrometry
-
Nesvizhskii, A.I. et al. (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem., 75, 4646-4658.
-
(2003)
Anal. Chem.
, vol.75
, pp. 4646-4658
-
-
Nesvizhskii, A.I.1
-
17
-
-
84887407404
-
Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
-
Omasits, U. et al. (2013) Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome. Genome Res., 23, 1916-1927.
-
(2013)
Genome Res.
, vol.23
, pp. 1916-1927
-
-
Omasits, U.1
-
18
-
-
0033434080
-
Probability-based protein identification by searching sequence databases using mass spectrometry data
-
Perkins, D.N. et al. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20, 3551-3567.
-
(1999)
Electrophoresis
, vol.20
, pp. 3551-3567
-
-
Perkins, D.N.1
-
19
-
-
77954502710
-
PeptideClassifier for protein inference and targeted quantitative proteomics
-
Qeli, E. and Ahrens, C.H. (2010) PeptideClassifier for protein inference and targeted quantitative proteomics. Nat. Biotechnol., 28, 647-650.
-
(2010)
Nat. Biotechnol.
, vol.28
, pp. 647-650
-
-
Qeli, E.1
Ahrens, C.H.2
-
20
-
-
78651271733
-
Integrative genomics viewer
-
Robinson, J.T. et al. (2011) Integrative genomics viewer. Nat. Biotechnol., 29, 24-26.
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
-
21
-
-
0042591493
-
Building protein diagrams on the web with the residuebased diagram editor RbDe
-
Skrabanek, L. et al. (2003) Building protein diagrams on the web with the residuebased diagram editor RbDe. Nucleic Acids Res., 31, 3856-3858.
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3856-3858
-
-
Skrabanek, L.1
-
22
-
-
10244225308
-
TMRPres2D: High quality visual representation of transmembrane protein models
-
Spyropoulos, I.C. et al. (2004) TMRPres2D: high quality visual representation of transmembrane protein models. Bioinformatics, 20, 3258-3260.
-
(2004)
Bioinformatics
, vol.20
, pp. 3258-3260
-
-
Spyropoulos, I.C.1
-
23
-
-
78651324347
-
The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
-
Szklarczyk, D. et al. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
-
(2011)
Nucleic Acids Res.
, vol.39
-
-
Szklarczyk, D.1
-
24
-
-
84864560730
-
A guideline to proteome-wide-helical membrane protein topology predictions
-
Tsirigos, K.D. et al. (2012) A guideline to proteome-wide-helical membrane protein topology predictions. Proteomics, 12, 2282-2294.
-
(2012)
Proteomics
, vol.12
, pp. 2282-2294
-
-
Tsirigos, K.D.1
-
25
-
-
64349089985
-
Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins
-
Wollscheid, B. et al. (2009) Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat. Biotechnol., 27, 378-386.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 378-386
-
-
Wollscheid, B.1
-
26
-
-
33749137280
-
UniPep-A database for human N-linked glycosites: A resource for biomarker discovery
-
Zhang, H. et al. (2006) UniPep-a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biol., 7, R73.
-
(2006)
Genome Biol.
, vol.7
-
-
Zhang, H.1
|