메뉴 건너뛰기




Volumn 30, Issue 6, 2014, Pages 884-886

Protter: Interactive protein feature visualization and integration with experimental proteomic data

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

EID: 84897873840     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt607     Document Type: Article
Times cited : (963)

References (26)
  • 1
    • 0034518145 scopus 로고    scopus 로고
    • T(E)Xtopo: Shaded membrane protein topology plots in LAT(E)X2epsilon
    • Beitz, E. (2000) T(E)Xtopo: shaded membrane protein topology plots in LAT(E)X2epsilon. Bioinformatics, 16, 1050-1051.
    • (2000) Bioinformatics , vol.16 , pp. 1050-1051
    • Beitz, E.1
  • 2
    • 84859222359 scopus 로고    scopus 로고
    • CD proteome and beyond-Technologies for targeting the immune cell surfaceome
    • Bock, T. et al. (2012) CD proteome and beyond-Technologies for targeting the immune cell surfaceome. Front. Biosci., 17, 1599-1612.
    • (2012) Front. Biosci. , vol.17 , pp. 1599-1612
    • Bock, T.1
  • 3
    • 57449099865 scopus 로고    scopus 로고
    • MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification
    • Cox, J. and Mann, M. (2008) MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification. Nat. Biotechnol., 26, 1367-1372.
    • (2008) Nat. Biotechnol. , vol.26 , pp. 1367-1372
    • Cox, J.1    Mann, M.2
  • 4
    • 77449108855 scopus 로고    scopus 로고
    • The peptideatlas project
    • Deutsch, E.W. et al. (2010) The PeptideAtlas Project. Methods Mol. Biol., 604, 285-296.
    • (2010) Methods Mol. Biol. , vol.604 , pp. 285-296
    • Deutsch, E.W.1
  • 5
    • 84867380614 scopus 로고    scopus 로고
    • Direct identification of ligand-receptor interactions on living cells and tissues
    • Frei, A.P. et al. (2012) Direct identification of ligand-receptor interactions on living cells and tissues. Nat. Biotechnol., 30, 997-1001.
    • (2012) Nat. Biotechnol. , vol.30 , pp. 997-1001
    • Frei, A.P.1
  • 6
    • 77649252269 scopus 로고    scopus 로고
    • Visualization of omics data for systems biology
    • Gehlenborg, N. et al. (2010) Visualization of omics data for systems biology. Nat. Methods, 7, S56-S68.
    • (2010) Nat. Methods , vol.7
    • Gehlenborg, N.1
  • 7
    • 34249739711 scopus 로고    scopus 로고
    • The membrane protein universe: What's out there and why bother?
    • von Heijne, G. (2007) The membrane protein universe: what's out there and why bother? J. Intern. Med., 6, 543-557.
    • (2007) J. Intern. Med. , vol.6 , pp. 543-557
    • Von Heijne, G.1
  • 8
    • 84875969679 scopus 로고    scopus 로고
    • N-glycoprotein SRMAtlas: A resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications
    • Huttenhain, R. et al. (2013) N-glycoprotein SRMAtlas: a resource of mass spectrometric assays for N-glycosites enabling consistent and multiplexed protein quantification for clinical applications. Mol. Cell. Proteomics, 12, 1005-1016.
    • (2013) Mol. Cell. Proteomics , vol.12 , pp. 1005-1016
    • Huttenhain, R.1
  • 9
    • 34547584314 scopus 로고    scopus 로고
    • Advantages of combined transmembrane topology and signal peptide prediction-The Phobius web server
    • Kall, L. et al. (2007) Advantages of combined transmembrane topology and signal peptide prediction-the Phobius web server. Nucleic Acids Res., 35, W429-W432.
    • (2007) Nucleic Acids Res. , vol.35
    • Kall, L.1
  • 10
    • 0037108887 scopus 로고    scopus 로고
    • Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search
    • Keller, A. et al. (2002) Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search. Anal. Chem., 74, 5383-5392.
    • (2002) Anal. Chem. , vol.74 , pp. 5383-5392
    • Keller, A.1
  • 11
    • 84862187489 scopus 로고    scopus 로고
    • NeXtProt: A knowledge platform for human proteins
    • Lane, L. et al. (2011) neXtProt: a knowledge platform for human proteins. Nucleic Acids Res., 40, D76-D83.
    • (2011) Nucleic Acids Res. , vol.40
    • Lane, L.1
  • 12
    • 54049090766 scopus 로고    scopus 로고
    • Selected reaction monitoring for quantitative proteomics: A tutorial
    • Lange, L. et al. (2008) Selected reaction monitoring for quantitative proteomics: a tutorial. Mol. Syst. Biol., 4, 222.
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 222
    • Lange, L.1
  • 13
    • 77951965920 scopus 로고    scopus 로고
    • Skyline: An open source document editor for creating and analyzing targeted proteomics experiments
    • MacLean, B. et al. (2010) Skyline: an open source document editor for creating and analyzing targeted proteomics experiments. Bioinformatics, 26, 966-968.
    • (2010) Bioinformatics , vol.26 , pp. 966-968
    • Maclean, B.1
  • 14
    • 79960976768 scopus 로고    scopus 로고
    • UniProt Knowledgebase: A hub of integrated protein data
    • Magrane, M. et al. (2011) UniProt Knowledgebase: a hub of integrated protein data. Database, 2011, bar009.
    • (2011) Database , vol.2011
    • Magrane, M.1
  • 15
    • 84875404794 scopus 로고    scopus 로고
    • The UCSC Genome Browser database: Extensions and updates 2013
    • Meyer, L.R. et al. (2012) The UCSC Genome Browser database: extensions and updates 2013. Nucleic Acids Res., 41, D64-D69.
    • (2012) Nucleic Acids Res. , vol.41
    • Meyer, L.R.1
  • 16
    • 0042338362 scopus 로고    scopus 로고
    • A statistical model for identifying proteins by tandem mass spectrometry
    • Nesvizhskii, A.I. et al. (2003) A statistical model for identifying proteins by tandem mass spectrometry. Anal. Chem., 75, 4646-4658.
    • (2003) Anal. Chem. , vol.75 , pp. 4646-4658
    • Nesvizhskii, A.I.1
  • 17
    • 84887407404 scopus 로고    scopus 로고
    • Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome
    • Omasits, U. et al. (2013) Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome. Genome Res., 23, 1916-1927.
    • (2013) Genome Res. , vol.23 , pp. 1916-1927
    • Omasits, U.1
  • 18
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identification by searching sequence databases using mass spectrometry data
    • Perkins, D.N. et al. (1999) Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis, 20, 3551-3567.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1
  • 19
    • 77954502710 scopus 로고    scopus 로고
    • PeptideClassifier for protein inference and targeted quantitative proteomics
    • Qeli, E. and Ahrens, C.H. (2010) PeptideClassifier for protein inference and targeted quantitative proteomics. Nat. Biotechnol., 28, 647-650.
    • (2010) Nat. Biotechnol. , vol.28 , pp. 647-650
    • Qeli, E.1    Ahrens, C.H.2
  • 20
    • 78651271733 scopus 로고    scopus 로고
    • Integrative genomics viewer
    • Robinson, J.T. et al. (2011) Integrative genomics viewer. Nat. Biotechnol., 29, 24-26.
    • (2011) Nat. Biotechnol. , vol.29 , pp. 24-26
    • Robinson, J.T.1
  • 21
    • 0042591493 scopus 로고    scopus 로고
    • Building protein diagrams on the web with the residuebased diagram editor RbDe
    • Skrabanek, L. et al. (2003) Building protein diagrams on the web with the residuebased diagram editor RbDe. Nucleic Acids Res., 31, 3856-3858.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3856-3858
    • Skrabanek, L.1
  • 22
    • 10244225308 scopus 로고    scopus 로고
    • TMRPres2D: High quality visual representation of transmembrane protein models
    • Spyropoulos, I.C. et al. (2004) TMRPres2D: high quality visual representation of transmembrane protein models. Bioinformatics, 20, 3258-3260.
    • (2004) Bioinformatics , vol.20 , pp. 3258-3260
    • Spyropoulos, I.C.1
  • 23
    • 78651324347 scopus 로고    scopus 로고
    • The STRING database in 2011: Functional interaction networks of proteins, globally integrated and scored
    • Szklarczyk, D. et al. (2011) The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored. Nucleic Acids Res., 39, D561-D568.
    • (2011) Nucleic Acids Res. , vol.39
    • Szklarczyk, D.1
  • 24
    • 84864560730 scopus 로고    scopus 로고
    • A guideline to proteome-wide-helical membrane protein topology predictions
    • Tsirigos, K.D. et al. (2012) A guideline to proteome-wide-helical membrane protein topology predictions. Proteomics, 12, 2282-2294.
    • (2012) Proteomics , vol.12 , pp. 2282-2294
    • Tsirigos, K.D.1
  • 25
    • 64349089985 scopus 로고    scopus 로고
    • Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins
    • Wollscheid, B. et al. (2009) Mass-spectrometric identification and relative quantification of N-linked cell surface glycoproteins. Nat. Biotechnol., 27, 378-386.
    • (2009) Nat. Biotechnol. , vol.27 , pp. 378-386
    • Wollscheid, B.1
  • 26
    • 33749137280 scopus 로고    scopus 로고
    • UniPep-A database for human N-linked glycosites: A resource for biomarker discovery
    • Zhang, H. et al. (2006) UniPep-a database for human N-linked glycosites: a resource for biomarker discovery. Genome Biol., 7, R73.
    • (2006) Genome Biol. , vol.7
    • Zhang, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.