-
1
-
-
85005965070
-
The human intestinal microbiome in health and disease
-
pmid: 27974040
-
S. V. Lynch, O. Pedersen, The human intestinal microbiome in health and disease. N. Engl. J. Med. 375, 2369–2379 (2016). doi: 10.1056/NEJMra1600266; pmid: 27974040
-
(2016)
N. Engl. J. Med.
, vol.375
, pp. 2369-2379
-
-
Lynch, S.V.1
Pedersen, O.2
-
2
-
-
33747137269
-
Escherichia coli induces DNA double-strand breaks in eukaryotic cells
-
pmid: 16902142
-
J.-P. Nougayrède et al., Escherichia coli induces DNA double-strand breaks in eukaryotic cells. Science 313, 848–851 (2006). doi: 10.1126/science.1127059; pmid: 16902142
-
(2006)
Science
, vol.313
, pp. 848-851
-
-
Nougayrède, J.-P.1
-
3
-
-
77954730486
-
Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells
-
pmid: 20534522
-
G. Cuevas-Ramos et al., Escherichia coli induces DNA damage in vivo and triggers genomic instability in mammalian cells. Proc. Natl. Acad. Sci. U.S.A. 107, 11537–11542 (2010). doi: 10.1073/pnas.1001261107; pmid: 20534522
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 11537-11542
-
-
Cuevas-Ramos, G.1
-
4
-
-
84867192879
-
Intestinal inflammation targets cancer-inducing activity of the microbiota
-
pmid: 22903521
-
J. C. Arthur et al., Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 338, 120–123 (2012). doi: 10.1126/science.1224820; pmid: 22903521
-
(2012)
Science
, vol.338
, pp. 120-123
-
-
Arthur, J.C.1
-
5
-
-
84907363534
-
Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer
-
pmid: 25182170
-
J. C. Arthur et al., Microbial genomic analysis reveals the essential role of inflammation in bacteria-induced colorectal cancer. Nat. Commun. 5, 4724 (2014). doi: 10.1038/ ncomms5724; pmid: 25182170
-
(2014)
Nat. Commun.
, vol.5
, pp. 4724
-
-
Arthur, J.C.1
-
6
-
-
84874007506
-
High prevalence of mucosa-associated E. Coli producing cyclomodulin and genotoxin in colon cancer
-
pmid: 23457644
-
E. Buc et al., High prevalence of mucosa-associated E. coli producing cyclomodulin and genotoxin in colon cancer. PLOS ONE 8, e56964 (2013). doi: 10.1371/journal. pone.0056964; pmid: 23457644
-
(2013)
PLOS ONE
, vol.8
-
-
Buc, E.1
-
7
-
-
85028945359
-
Cancer-associated fecal microbial markers in colorectal cancer detection
-
pmid: 28833079
-
V. Eklöf et al., Cancer-associated fecal microbial markers in colorectal cancer detection. Int. J. Cancer 141, 2528–2536 (2017). doi: 10.1002/ijc.31011; pmid: 28833079
-
(2017)
Int. J. Cancer
, vol.141
, pp. 2528-2536
-
-
Eklöf, V.1
-
8
-
-
85041288837
-
Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria
-
pmid: 29420293
-
C. M. Dejea et al., Patients with familial adenomatous polyposis harbor colonic biofilms containing tumorigenic bacteria. Science 359, 592–597 (2018). doi: 10.1126/science.aah3648; pmid: 29420293
-
(2018)
Science
, vol.359
, pp. 592-597
-
-
Dejea, C.M.1
-
9
-
-
84903719462
-
Comparative metabolomics and structural characterizations illuminate colibactin pathway-dependent small molecules
-
pmid: 24932672
-
M. I. Vizcaino, P. Engel, E. Trautman, J. M. Crawford, Comparative metabolomics and structural characterizations illuminate colibactin pathway-dependent small molecules. J. Am. Chem. Soc. 136, 9244–9247 (2014). doi: 10.1021/ ja503450q; pmid: 24932672
-
(2014)
J. Am. Chem. Soc.
, vol.136
, pp. 9244-9247
-
-
Vizcaino, M.I.1
Engel, P.2
Trautman, E.3
Crawford, J.M.4
-
10
-
-
84928549042
-
The colibactin warhead crosslinks DNA
-
pmid: 25901819
-
M. I. Vizcaino, J. M. Crawford, The colibactin warhead crosslinks DNA. Nat. Chem. 7, 411–417 (2015). doi: 10.1038/ nchem.2221; pmid: 25901819
-
(2015)
Nat. Chem.
, vol.7
, pp. 411-417
-
-
Vizcaino, M.I.1
Crawford, J.M.2
-
11
-
-
84925372827
-
Isolation of a metabolite from the pks island provides insights into colibactin biosynthesis and activity
-
pmid: 25753745
-
C. A. Brotherton, M. Wilson, G. Byrd, E. P. Balskus, Isolation of a metabolite from the pks island provides insights into colibactin biosynthesis and activity. Org. Lett. 17, 1545–1548 (2015). doi: 10.1021/acs.orglett.5b00432; pmid: 25753745
-
(2015)
Org. Lett.
, vol.17
, pp. 1545-1548
-
-
Brotherton, C.A.1
Wilson, M.2
Byrd, G.3
Balskus, E.P.4
-
12
-
-
84928150480
-
Two more pieces of the colibactin genotoxin puzzle from Escherichia coli show incorporation of an unusual 1-aminocyclopropanecarboxylic acid moiety
-
pmid: 28706687
-
X. Bian, A. Plaza, Y. Zhang, R. Müller, Two more pieces of the colibactin genotoxin puzzle from Escherichia coli show incorporation of an unusual 1-aminocyclopropanecarboxylic acid moiety. Chem. Sci. 6, 3154–3160 (2015). doi: 10.1039/ C5SC00101C; pmid: 28706687
-
(2015)
Chem. Sci.
, vol.6
, pp. 3154-3160
-
-
Bian, X.1
Plaza, A.2
Zhang, Y.3
Müller, R.4
-
13
-
-
84938741118
-
Critical intermediates reveal new biosynthetic events in the enigmatic colibactin pathway
-
pmid: 26052818
-
Z. R. Li et al., Critical intermediates reveal new biosynthetic events in the enigmatic colibactin pathway. ChemBioChem 16, 1715–1719 (2015). doi: 10.1002/cbic.201500239; pmid: 26052818
-
(2015)
ChemBioChem
, vol.16
, pp. 1715-1719
-
-
Li, Z.R.1
-
14
-
-
84971276185
-
Characterization of polyketide synthase machinery from the pks island facilitates isolation of a candidate precolibactin
-
pmid: 26890481
-
L. Zha, M. R. Wilson, C. A. Brotherton, E. P. Balskus, Characterization of polyketide synthase machinery from the pks island facilitates isolation of a candidate precolibactin. ACS Chem. Biol. 11, 1287–1295 (2016). doi: 10.1021/ acschembio.6b00014; pmid: 26890481
-
(2016)
ACS Chem. Biol.
, vol.11
, pp. 1287-1295
-
-
Zha, L.1
Wilson, M.R.2
Brotherton, C.A.3
Balskus, E.P.4
-
15
-
-
84983505484
-
Divergent biosynthesis yields a cytotoxic aminomalonate-containing precolibactin
-
pmid: 27547923
-
Z. R. Li et al., Divergent biosynthesis yields a cytotoxic aminomalonate-containing precolibactin. Nat. Chem. Biol. 12, 773–775 (2016). doi: 10.1038/nchembio.2157; pmid: 27547923
-
(2016)
Nat. Chem. Biol.
, vol.12
, pp. 773-775
-
-
Li, Z.R.1
-
16
-
-
80053928137
-
ClbP is a prototype of a peptidase subgroup involved in biosynthesis of nonribosomal peptides
-
pmid: 21795676
-
D. Dubois et al., ClbP is a prototype of a peptidase subgroup involved in biosynthesis of nonribosomal peptides. J. Biol. Chem. 286, 35562–35570 (2011). doi: 10.1074/jbc. M111.221960; pmid: 21795676
-
(2011)
J. Biol. Chem.
, vol.286
, pp. 35562-35570
-
-
Dubois, D.1
-
17
-
-
84874909872
-
A prodrug resistance mechanism is involved in colibactin biosynthesis and cytotoxicity
-
pmid: 23406518
-
C. A. Brotherton, E. P. Balskus, A prodrug resistance mechanism is involved in colibactin biosynthesis and cytotoxicity. J. Am. Chem. Soc. 135, 3359–3362 (2013). doi: 10.1021/ja312154m; pmid: 23406518
-
(2013)
J. Am. Chem. Soc.
, vol.135
, pp. 3359-3362
-
-
Brotherton, C.A.1
Balskus, E.P.2
-
18
-
-
84879842883
-
In vivo evidence for a prodrug activation mechanism during colibactin maturation
-
pmid: 23744512
-
X. Bian et al., In vivo evidence for a prodrug activation mechanism during colibactin maturation. ChemBioChem 14, 1194–1197 (2013). doi: 10.1002/cbic.201300208; pmid: 23744512
-
(2013)
ChemBioChem
, vol.14
, pp. 1194-1197
-
-
Bian, X.1
-
19
-
-
84862271006
-
Chemistry and biology of acylfulvenes: Sesquiterpene-derived antitumor agents
-
pmid: 22482429
-
M. Tanasova, S. J. Sturla, Chemistry and biology of acylfulvenes: Sesquiterpene-derived antitumor agents. Chem. Rev. 112, 3578–3610 (2012). doi: 10.1021/cr2001367; pmid: 22482429
-
(2012)
Chem. Rev.
, vol.112
, pp. 3578-3610
-
-
Tanasova, M.1
Sturla, S.J.2
-
20
-
-
74249120351
-
Chemical and biological explorations of the family of CC-1065 and the duocarmycin natural products
-
pmid: 19903166
-
N. Ghosh, H. M. Sheldrake, M. Searcey, K. Pors, Chemical and biological explorations of the family of CC-1065 and the duocarmycin natural products. Curr. Top. Med. Chem. 9, 1494–1524 (2009). doi: 10.2174/156802609789909812; pmid: 19903166
-
(2009)
Curr. Top. Med. Chem.
, vol.9
, pp. 1494-1524
-
-
Ghosh, N.1
Sheldrake, H.M.2
Searcey, M.3
Pors, K.4
-
21
-
-
84856233300
-
Balancing repair and tolerance of DNA damage caused by alkylating agents
-
pmid: 22237395
-
D. Fu, J. A. Calvo, L. D. Samson, Balancing repair and tolerance of DNA damage caused by alkylating agents. Nat. Rev. Cancer 12, 104–120 (2012). doi: 10.1038/nrc3185; pmid: 22237395
-
(2012)
Nat. Rev. Cancer
, vol.12
, pp. 104-120
-
-
Fu, D.1
Calvo, J.A.2
Samson, L.D.3
-
22
-
-
85002711280
-
A mechanistic model for colibactin-induced genotoxicity
-
pmid: 27934011
-
A. R. Healy, H. Nikolayevskiy, J. R. Patel, J. M. Crawford, S. B. Herzon, A mechanistic model for colibactin-induced genotoxicity. J. Am. Chem. Soc. 138, 15563–15570 (2016). doi: 10.1021/jacs.6b10354; pmid: 27934011
-
(2016)
J. Am. Chem. Soc.
, vol.138
, pp. 15563-15570
-
-
Healy, A.R.1
Nikolayevskiy, H.2
Patel, J.R.3
Crawford, J.M.4
Herzon, S.B.5
-
23
-
-
33644619706
-
Prokaryotic nucleotide excision repair: The UvrABC system
-
pmid: 16464004
-
J. J. Truglio, D. L. Croteau, B. Van Houten, C. Kisker, Prokaryotic nucleotide excision repair: The UvrABC system. Chem. Rev. 106, 233–252 (2006). doi: 10.1021/cr040471u; pmid: 16464004
-
(2006)
Chem. Rev.
, vol.106
, pp. 233-252
-
-
Truglio, J.J.1
Croteau, D.L.2
Van Houten, B.3
Kisker, C.4
-
24
-
-
84961755777
-
Escherichia coli ClbS is a colibactin resistance protein
-
pmid: 26560421
-
N. Bossuet-Greif et al., Escherichia coli ClbS is a colibactin resistance protein. Mol. Microbiol. 99, 897–908 (2016). doi: 10.1111/mmi.13272; pmid: 26560421
-
(2016)
Mol. Microbiol.
, vol.99
, pp. 897-908
-
-
Bossuet-Greif, N.1
-
25
-
-
85038264455
-
ClbS is a cyclopropane hydrolase that confers colibactin resistance
-
pmid: 29112397
-
P. Tripathi et al., ClbS is a cyclopropane hydrolase that confers colibactin resistance. J. Am. Chem. Soc. 139, 17719–17722 (2017). doi: 10.1021/jacs.7b09971; pmid: 29112397
-
(2017)
J. Am. Chem. Soc.
, vol.139
, pp. 17719-17722
-
-
Tripathi, P.1
-
26
-
-
84893635154
-
Application of a high-resolution mass-spectrometry-based DNA adductomics approach for identification of DNA adducts in complex mixtures
-
pmid: 24410521
-
S. Balbo, S. S. Hecht, P. Upadhyaya, P. W. Villalta, Application of a high-resolution mass-spectrometry-based DNA adductomics approach for identification of DNA adducts in complex mixtures. Anal. Chem. 86, 1744–1752 (2014). doi: 10.1021/ac403565m; pmid: 24410521
-
(2014)
Anal. Chem.
, vol.86
, pp. 1744-1752
-
-
Balbo, S.1
Hecht, S.S.2
Upadhyaya, P.3
Villalta, P.W.4
-
28
-
-
84872537079
-
Quantification of acylfulvene- And illudin S-DNA adducts in cells with variable bioactivation capacities
-
pmid: 23227857
-
K. E. Pietsch, P. M. van Midwoud, P. W. Villalta, S. J. Sturla, Quantification of acylfulvene- and illudin S-DNA adducts in cells with variable bioactivation capacities. Chem. Res. Toxicol. 26, 146–155 (2013). doi: 10.1021/tx300430r; pmid: 23227857
-
(2013)
Chem. Res. Toxicol.
, vol.26
, pp. 146-155
-
-
Pietsch, K.E.1
van Midwoud, P.M.2
Villalta, P.W.3
Sturla, S.J.4
-
29
-
-
85056302105
-
Characterization of natural colibactin-nucleobase adducts by tandem mass spectrometry and isotopic labeling. Support for DNA alkylation by cyclopropane ring opening
-
pmid: 30365310
-
M. Xue, E. Shine, W. Wang, J. M. Crawford, S. B. Herzon, Characterization of natural colibactin-nucleobase adducts by tandem mass spectrometry and isotopic labeling. Support for DNA alkylation by cyclopropane ring opening. Biochemistry 57, 6391–6394 (2018). doi: 10.1021/acs.biochem.8b01023; pmid: 30365310
-
(2018)
Biochemistry
, vol.57
, pp. 6391-6394
-
-
Xue, M.1
Shine, E.2
Wang, W.3
Crawford, J.M.4
Herzon, S.B.5
-
30
-
-
77956630251
-
Assigning stereochemistry to single diastereoisomers by GIAO NMR calculation: The DP4 probability
-
pmid: 20795713
-
S. G. Smith, J. M. Goodman, Assigning stereochemistry to single diastereoisomers by GIAO NMR calculation: The DP4 probability. J. Am. Chem. Soc. 132, 12946–12959 (2010). doi: 10.1021/ja105035r; pmid: 20795713
-
(2010)
J. Am. Chem. Soc.
, vol.132
, pp. 12946-12959
-
-
Smith, S.G.1
Goodman, J.M.2
-
31
-
-
0025773799
-
Isolation and characterization of the duocarmycin-adenine DNA adduct
-
D. L. Boger, T. Ishizaki, H. Zarrinmayeh, Isolation and characterization of the duocarmycin-adenine DNA adduct. J. Am. Chem. Soc. 113, 6645–6649 (1991). doi: 10.1021/ ja00017a042
-
(1991)
J. Am. Chem. Soc.
, vol.113
, pp. 6645-6649
-
-
Boger, D.L.1
Ishizaki, T.2
Zarrinmayeh, H.3
-
32
-
-
85045674243
-
The colibactin genotoxin generates DNA interstrand cross-links in infected cells
-
pmid: 29559578
-
N. Bossuet-Greif et al., The colibactin genotoxin generates DNA interstrand cross-links in infected cells. mBio 9, e02393-17 (2018). doi: 10.1128/mBio.02393-17; pmid: 29559578
-
(2018)
mBio
, vol.9
, pp. e02393-e02417
-
-
Bossuet-Greif, N.1
-
33
-
-
66249084554
-
Kinetics of H2AX phosphorylation after exposure to cisplatin
-
pmid: 18727058
-
P. L. Olive, J. P. Banáth, Kinetics of H2AX phosphorylation after exposure to cisplatin. Cytometry B Clin. Cytom. 76, 79–90 (2009). doi: 10.1002/cyto.b.20450; pmid: 18727058
-
(2009)
Cytometry B Clin. Cytom.
, vol.76
, pp. 79-90
-
-
Olive, P.L.1
Banáth, J.P.2
-
34
-
-
77953371612
-
Single cell trapping and DNA damage analysis using microwell arrays
-
pmid: 20534572
-
D. K. Wood, D. M. Weingeist, S. N. Bhatia, B. P. Engelward, Single cell trapping and DNA damage analysis using microwell arrays. Proc. Natl. Acad. Sci. U.S.A. 107, 10008–10013 (2010). doi: 10.1073/pnas.1004056107; pmid: 20534572
-
(2010)
Proc. Natl. Acad. Sci. U.S.A.
, vol.107
, pp. 10008-10013
-
-
Wood, D.K.1
Weingeist, D.M.2
Bhatia, S.N.3
Engelward, B.P.4
-
35
-
-
84922449574
-
Micropatterned comet assay enables high throughput and sensitive DNA damage quantification
-
pmid: 25527723
-
J. Ge et al., Micropatterned comet assay enables high throughput and sensitive DNA damage quantification. Mutagenesis 30, 11–19 (2015). doi: 10.1093/mutage/geu063; pmid: 25527723
-
(2015)
Mutagenesis
, vol.30
, pp. 11-19
-
-
Ge, J.1
-
36
-
-
33646539237
-
Hydrogen peroxide oxidation of a-(N,N-dialkyl)aminoketones
-
D. Wenkert, K. M. Eliasson, D. Rudisill, Hydrogen peroxide oxidation of a-(N,N-dialkyl)aminoketones. J. Chem. Soc. Chem. Commun. 7, 392–393 (1983). doi: 10.1039/ C39830000392
-
(1983)
J. Chem. Soc. Chem. Commun.
, vol.7
, pp. 392-393
-
-
Wenkert, D.1
Eliasson, K.M.2
Rudisill, D.3
-
37
-
-
53049087109
-
Genomic and epigenetic instability in colorectal cancer pathogenesis
-
pmid: 18773902
-
W. M. Grady, J. M. Carethers, Genomic and epigenetic instability in colorectal cancer pathogenesis. Gastroenterology 135, 1079–1099 (2008). doi: 10.1053/j.gastro.2008.07.076; pmid: 18773902
-
(2008)
Gastroenterology
, vol.135
, pp. 1079-1099
-
-
Grady, W.M.1
Carethers, J.M.2
-
38
-
-
3543129379
-
Chemical-induced DNA damage and human cancer risk
-
pmid: 15286742
-
M. C. Poirier, Chemical-induced DNA damage and human cancer risk. Nat. Rev. Cancer 4, 630–637 (2004). doi: 10.1038/ nrc1410; pmid: 15286742
-
(2004)
Nat. Rev. Cancer
, vol.4
, pp. 630-637
-
-
Poirier, M.C.1
-
39
-
-
85050763814
-
E. Coli and colorectal cancer: A complex relationship that deserves a critical mindset
-
pmid: 29909724
-
T. M. Wassenaar, E. coli and colorectal cancer: A complex relationship that deserves a critical mindset. Crit. Rev. Microbiol. 44, 619–632 (2018). doi: 10.1080/ 1040841X.2018.1481013; pmid: 29909724
-
(2018)
Crit. Rev. Microbiol.
, vol.44
, pp. 619-632
-
-
Wassenaar, T.M.1
|