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Volumn 20, Issue 1, 2019, Pages

Whole blood RNA sequencing reveals a unique transcriptomic profile in patients with ARDS following hematopoietic stem cell transplantation

Author keywords

Acute respiratory distress syndrome (ARDS); Bone marrow transplant; Hematopoietic stem cell transplantation; Respiratory failure; RNA sequencing; RNA Seq; Transcriptome profiling

Indexed keywords

INTERFERON; METHYLPREDNISOLONE; RNA; TRANSCRIPTOME;

EID: 85060243577     PISSN: 14659921     EISSN: 1465993X     Source Type: Journal    
DOI: 10.1186/s12931-019-0981-6     Document Type: Article
Times cited : (14)

References (40)
  • 2
    • 84959277025 scopus 로고    scopus 로고
    • Epidemiology, patterns of care, and mortality for patients with acute respiratory distress syndrome in intensive care units in 50 countries
    • 1:CAS:528:DC%2BC28XhtFGqsbbE
    • Bellani G, Laffey JG, Pham T, Fan E, Brochard L, Esteban A, Gattinoni L, van Haren F, Larsson A, McAuley DF, et al. Epidemiology, patterns of care, and mortality for patients with acute respiratory distress syndrome in intensive care units in 50 countries. JAMA. 2016;315:788-800.
    • (2016) JAMA , vol.315 , pp. 788-800
    • Bellani, G.1    Laffey, J.G.2    Pham, T.3    Fan, E.4    Brochard, L.5    Esteban, A.6    Gattinoni, L.7    Van Haren, F.8    Larsson, A.9    McAuley, D.F.10
  • 9
    • 33646119401 scopus 로고    scopus 로고
    • Hematopoietic stem-cell transplantation
    • 1:CAS:528:DC%2BD28XjvVarsro%3D
    • Copelan EA. Hematopoietic stem-cell transplantation. N Engl J Med. 2006;354:1813-26.
    • (2006) N Engl J Med , vol.354 , pp. 1813-1826
    • Copelan, E.A.1
  • 10
    • 0035171603 scopus 로고    scopus 로고
    • Bronchiolitis obliterans and other late onset non-infectious pulmonary complications in hematopoietic stem cell transplantation
    • 1:STN:280:DC%2BD3MrksFaquw%3D%3D
    • Afessa B, Litzow MR, Tefferi A. Bronchiolitis obliterans and other late onset non-infectious pulmonary complications in hematopoietic stem cell transplantation. Bone Marrow Transplant. 2001;28:425-34.
    • (2001) Bone Marrow Transplant , vol.28 , pp. 425-434
    • Afessa, B.1    Litzow, M.R.2    Tefferi, A.3
  • 11
    • 84890276011 scopus 로고    scopus 로고
    • An update on pulmonary complications of hematopoietic stem cell transplantation
    • Chi AK, Soubani AO, White AC, Miller KB. An update on pulmonary complications of hematopoietic stem cell transplantation. Chest. 2013;144:1913-22.
    • (2013) Chest , vol.144 , pp. 1913-1922
    • Chi, A.K.1    Soubani, A.O.2    White, A.C.3    Miller, K.B.4
  • 18
    • 84907821372 scopus 로고    scopus 로고
    • Integrative »omic» analysis of experimental bacteremia identifies a metabolic signature that distinguishes human sepsis from systemic inflammatory response syndromes
    • 1:CAS:528:DC%2BC2cXhslOitbfK
    • Langley RJ, Tipper JL, Bruse S, Baron RM, Tsalik EL, Huntley J, Rogers AJ, Jaramillo RJ, O'Donnell D, Mega WM, et al. Integrative »omic» analysis of experimental bacteremia identifies a metabolic signature that distinguishes human sepsis from systemic inflammatory response syndromes. Am J Respir Crit Care Med. 2014;190:445-55.
    • (2014) Am J Respir Crit Care Med , vol.190 , pp. 445-455
    • Langley, R.J.1    Tipper, J.L.2    Bruse, S.3    Baron, R.M.4    Tsalik, E.L.5    Huntley, J.6    Rogers, A.J.7    Jaramillo, R.J.8    O'Donnell, D.9    Mega, W.M.10
  • 22
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 1:CAS:528:DC%2BD1cXnslyqs7k%3D
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods. 2008;5:621-8.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 23
    • 84924629414 scopus 로고    scopus 로고
    • Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2
    • Love MI, Huber W, Anders S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Biol. 2014;15:550.
    • (2014) Genome Biol , vol.15 , pp. 550
    • Love, M.I.1    Huber, W.2    Anders, S.3
  • 24
    • 84903729955 scopus 로고    scopus 로고
    • RNA-seq: Impact of RNA degradation on transcript quantification
    • Gallego Romero I, Pai AA, Tung J, Gilad Y. RNA-seq: impact of RNA degradation on transcript quantification. BMC Biol. 2014;12:42.
    • (2014) BMC Biol , vol.12 , pp. 42
    • Gallego Romero, I.1    Pai, A.A.2    Tung, J.3    Gilad, Y.4
  • 25
    • 61449172037 scopus 로고    scopus 로고
    • Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources
    • Huang DW, Sherman BT, Lempicki RA. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protocols. 2008;4:44-57.
    • (2008) Nat Protocols , vol.4 , pp. 44-57
    • Huang, D.W.1    Sherman, B.T.2    Lempicki, R.A.3
  • 26
    • 44949231424 scopus 로고    scopus 로고
    • Analyzing real-time PCR data by the comparative C(T) method
    • 1:CAS:528:DC%2BD1cXmvVemt7c%3D
    • Schmittgen TD, Livak KJ. Analyzing real-time PCR data by the comparative C(T) method. Nat Protoc. 2008;3:1101-8.
    • (2008) Nat Protoc , vol.3 , pp. 1101-1108
    • Schmittgen, T.D.1    Livak, K.J.2
  • 29
    • 84978499039 scopus 로고    scopus 로고
    • One Codex: A Sensitive and Accurate Data Platform for Genomic Microbial Identification
    • Minot SS, Krumm N, Greenfield NB. One Codex: A Sensitive and Accurate Data Platform for Genomic Microbial Identification. bioRxiv. 2015. https://www.biorxiv.org/content/early/2015/09/25/027607.
    • (2015) BioRxiv
    • Minot, S.S.1    Krumm, N.2    Greenfield, N.B.3
  • 32
    • 84931274921 scopus 로고    scopus 로고
    • Idiopathic pneumonia syndrome after hematopoietic cell transplantation: Evidence of occult infectious etiologies
    • 1:CAS:528:DC%2BC2MXhtFalsrzF
    • Seo S, Renaud C, Kuypers JM, Chiu CY, Huang ML, Samayoa E, Xie H, Yu G, Fisher CE, Gooley TA, et al. Idiopathic pneumonia syndrome after hematopoietic cell transplantation: evidence of occult infectious etiologies. Blood. 2015;125:3789-97.
    • (2015) Blood , vol.125 , pp. 3789-3797
    • Seo, S.1    Renaud, C.2    Kuypers, J.M.3    Chiu, C.Y.4    Huang, M.L.5    Samayoa, E.6    Xie, H.7    Yu, G.8    Fisher, C.E.9    Gooley, T.A.10
  • 35
    • 85061558061 scopus 로고    scopus 로고
    • Efficacy and Safety of FP-1201-lyo (Interferon Beta-1a) in Patients Having Acute Respiratory Distress Syndrome (ARDS) (INTEREST)
    • Faron Pharmaceuticals Ltd
    • Faron Pharmaceuticals Ltd. Efficacy and Safety of FP-1201-lyo (Interferon Beta-1a) in Patients Having Acute Respiratory Distress Syndrome (ARDS) (INTEREST). NIH website. https://clinicaltrials.gov/ct2/show/NCT02622724.
    • NIH Website
  • 36
    • 85033781066 scopus 로고    scopus 로고
    • Comparison of the efficacy and safety of FP-1201-lyo (intravenously administered recombinant human interferon beta-1a) and placebo in the treatment of patients with moderate or severe acute respiratory distress syndrome: Study protocol for a randomized controlled trial
    • Bellingan G, Brealey D, Mancebo J, Mercat A, Patroniti N, Pettila V, Quintel M, Vincent JL, Maksimow M, Jalkanen M, et al. Comparison of the efficacy and safety of FP-1201-lyo (intravenously administered recombinant human interferon beta-1a) and placebo in the treatment of patients with moderate or severe acute respiratory distress syndrome: study protocol for a randomized controlled trial. Trials. 2017;18:536.
    • (2017) Trials , vol.18 , pp. 536
    • Bellingan, G.1    Brealey, D.2    Mancebo, J.3    Mercat, A.4    Patroniti, N.5    Pettila, V.6    Quintel, M.7    Vincent, J.L.8    Maksimow, M.9    Jalkanen, M.10
  • 37
    • 85047737579 scopus 로고    scopus 로고
    • Multicohort analysis of whole-blood gene expression data does not form a robust diagnostic for acute respiratory distress syndrome
    • Sweeney TE, Thomas NJ, Howrylak JA, Wong HR, Rogers AJ, Khatri P. Multicohort analysis of whole-blood gene expression data does not form a robust diagnostic for acute respiratory distress syndrome. Crit Care Med. 2018;46:244-51.
    • (2018) Crit Care Med , vol.46 , pp. 244-251
    • Sweeney, T.E.1    Thomas, N.J.2    Howrylak, J.A.3    Wong, H.R.4    Rogers, A.J.5    Khatri, P.6
  • 40
    • 80054783515 scopus 로고    scopus 로고
    • Importance of correlation between gene expression levels: Application to the type i interferon signature in rheumatoid arthritis
    • 1:CAS:528:DC%2BC3MXhsVCku7zM
    • Reynier F, Petit F, Paye M, Turrel-Davin F, Imbert PE, Hot A, Mougin B, Miossec P. Importance of correlation between gene expression levels: application to the type I interferon signature in rheumatoid arthritis. PLoS One. 2011;6:e24828.
    • (2011) PLoS One , vol.6 , pp. e24828
    • Reynier, F.1    Petit, F.2    Paye, M.3    Turrel-Davin, F.4    Imbert, P.E.5    Hot, A.6    Mougin, B.7    Miossec, P.8


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.