ARIBA: Rapid antimicrobial resistance genotyping directly from sequencing reads

Microbial Genomics

Volumn 3, Issue 10, 2017, Pages

  Hunt, Martin ^a   Mather, Alison E ^a,b   Sánchez Busó, Leonor ^a   Page, Andrew J ^a   Parkhill, Julian ^a   Keane, Jacqueline A ^a   Harris, Simon R ^a  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b UNIVERSITY OF CAMBRIDGE   (United Kingdom)

Author keywords

Antimicrobial resistance; Bacteria; Genotyping; Sequence typing; Whole genome sequencing

Indexed keywords

ANTIBIOTIC RESISTANCE; GENE MUTATION; GENOTYPE; GRAM NEGATIVE BACTERIUM; HUMAN; NONHUMAN; SINGLE NUCLEOTIDE POLYMORPHISM; WHOLE GENOME SEQUENCING; ANIMAL; ENTEROCOCCUS FAECIUM; GENETICS; GENOMICS; INFECTION; MICROBIOLOGY; NEISSERIA GONORRHOEAE; SHIGELLA SONNEI; SOFTWARE;

ANIMALS; DRUG RESISTANCE, MICROBIAL; ENTEROCOCCUS FAECIUM; GENOMICS; HUMANS; INFECTION; NEISSERIA GONORRHOEAE; SHIGELLA SONNEI; SOFTWARE;

EID: 85057391441     PISSN: None     EISSN: 20575858     Source Type: Journal    
DOI: 10.1099/mgen.0.000131     Document Type: Article

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