Comparison of classical multi-locus sequence typing software for next-generation sequencing data

Microbial Genomics

Volumn 3, Issue 8, 2017, Pages

  Page, Andrew J ^a   Alikhan, Nabil Fareed ^b   Carleton, Heather A ^c   Seemann, Torsten ^d   Keane, Jacqueline A ^a   Katz, Lee S ^c,e  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b UNIVERSITY OF WARWICK   (United Kingdom)

^c CENTERS FOR DISEASE CONTROL AND PREVENTION   (United States)

^d UNIVERSITY OF MELBOURNE   (Australia)

^e UNIVERSITY OF GEORGIA   (United States)

Author keywords

MLST; Multi locus sequence typing; Next generation sequencing; Software comparison

Indexed keywords

CONTAMINATION; NEXT GENERATION SEQUENCING; SIMULATION; SOFTWARE; BACTERIAL GENOME; BACTERIUM; BACTERIUM IDENTIFICATION; FACTUAL DATABASE; GENETICS; MULTILOCUS SEQUENCE TYPING; PROCEDURES;

BACTERIA; BACTERIAL TYPING TECHNIQUES; DATABASES, FACTUAL; GENOME, BACTERIAL; MULTILOCUS SEQUENCE TYPING; SOFTWARE;

EID: 85048554239     PISSN: None     EISSN: 20575858     Source Type: Journal    
DOI: 10.1099/mgen.0.000124     Document Type: Review

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