Rapid neighbour-joining

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5251 LNBI, Issue , 2008, Pages 113-122

  Simonsen, Martin ^a   Mailund, Thomas ^a   Pedersen, Christian N S ^a  

^a AARHUS UNIVERSITY   (Denmark)

Author keywords

[No Author keywords available]

Indexed keywords

BIOINFORMATICS; MERGERS AND ACQUISITIONS; TECHNICAL PRESENTATIONS;

AVERAGE DISTANCES; OPTIMISATION; SEARCH STRATEGIES;

JOINING;

EID: 56649097248     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-87361-7_10     Document Type: Conference Paper

References (11)

1. Elias, I., Lagergren, J.: Fast neighbour joining. In: Caires, L., Italiano, G.F., Monteiro, L., Palamidessi, C., Yung, M. (eds.) ICALP 2005. LNCS, vol. 3580, pp. 1263-1274. Springer, Heidelberg (2005)
2. Elias, I., Lagergren, J.: Fast computation of distance estimators. BMC Bioinformatics 8, 89 (2007)
3. Evans, J., Sheneman, L., Foster, J.A.: Relaxed neighbor joining: A fast distance-based phylogenetic tree construction method. Journal of Molecular Evolution 62(6), 785-792 (2006)
4. Finn, R.D., Mistry, J., Schuster-Böckler, B., Griffiths-Jones, S., Hollich, V., Lassmann, T., Moxon, S., Marshall, M., Khanna, A., Durbin, R., Eddy, S.R., Sonnhammer, E.L.L., Bateman, A.: Pfam: Clans, web tools and services. Nucleic Acids Research, Database Issue 34, D247-D251 (2006)
5. Howe, K., Bateman, A., Durbin, R.: QuickTree: Building huge neighbour-joining trees of protein sequences. Bioinformatics 18(11), 1546-1547 (2002)
6. Mailund, T., Brodai, G.S., Fagerberg, R., Pedersen, C.N.S., Philips, D.: Recrafting the neighbor-joining method. BMC Bioinformatics 7(29) (2006)
7. Mailund, T., Pedersen, C.N.S.: QuickJoin - fast neighbour-joining tree reconstruction. Bioinformatics 20, 3261-3262 (2004)
8. Saitou, N., Nei, M.: The neighbor-joining method: A new method for reconstructing phylogenetic trees. Molecular Biology and Evolution 4, 406-425 (1987)
9. Sanderson, M.L.: Inferring absolute rates of molecular evolution and divergence times in the absence of molecular clock. Bioinformatics 19, 301-302 (2003)
10. Sheneman, L., Evans, J., Foster, J.A.: Clearcut: A fast implementation of relaxed neighbor-joining. Bioinformatics 22(22), 2823-2824 (2006)
11. Studier, J.A., Kepler, K.J.: A note on the neighbour-joining method of Saitou and Nei. Molecular Biology and Evolution 5, 729-731 (1988)