-
1
-
-
84865231395
-
Transforming clinical microbiology with bacterial genome sequencing
-
Didelot X, Bowden R, Wilson DJ, Peto TE, Crook DW. 2012. Transforming clinical microbiology with bacterial genome sequencing. Nat. Rev. Genet. 13:601-612. http://dx.doi.org/10.1038/nrg3226.
-
(2012)
Nat. Rev. Genet.
, vol.13
, pp. 601-612
-
-
Didelot, X.1
Bowden, R.2
Wilson, D.J.3
Peto, T.E.4
Crook, D.W.5
-
2
-
-
40549120596
-
The RAST Server: Rapid annotations using subsystems technology
-
Aziz RK, Bartels D, Best AA, DeJongh M, Disz T, Edwards RA, Formsma K, Gerdes S, Glass EM, Kubal M, Meyer F, Olsen GJ, Olson R, Osterman AL, Overbeek RA, McNeil LK, Paarmann D, Paczian T, Parrello B, Pusch GD, Reich C, Stevens R, Vassieva O, Vonstein V, Wilke A, Zagnitko O. 2008. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 9:75. http://dx.doi.org/ 10.1186/1471-2164-9-75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
DeJongh, M.4
Disz, T.5
Edwards, R.A.6
Formsma, K.7
Gerdes, S.8
Glass, E.M.9
Kubal, M.10
Meyer, F.11
Olsen, G.J.12
Olson, R.13
Osterman, A.L.14
Overbeek, R.A.15
McNeil, L.K.16
Paarmann, D.17
Paczian, T.18
Parrello, B.19
Pusch, G.D.20
Reich, C.21
Stevens, R.22
Vassieva, O.23
Vonstein, V.24
Wilke, A.25
Zagnitko, O.26
more..
-
3
-
-
0033485517
-
Improvedmicrobial gene identification with GLIMMER
-
Delcher AL, Harmon D, Kasif S, White O, Salzberg SL. 1999. Improvedmicrobial gene identification with GLIMMER. Nucleic Acids Res. 27: 4636-4641. http://dx.doi.org/10.1093/nar/27.23.4636.
-
(1999)
Nucleic Acids Res
, vol.27
, pp. 4636-4641
-
-
Delcher, A.L.1
Harmon, D.2
Kasif, S.3
White, O.4
Salzberg, S.L.5
-
4
-
-
38549101119
-
The integrated microbial genomes (IMG) system in 2007: Data content and analysis tool extensions
-
Database issue
-
Markowitz VM, Szeto E, Palaniappan K, Grechkin Y, Chu K, Chen IM, Dubchak I, Anderson I, Lykidis A, Mavromatis K, Ivanova NN, Kyrpides NC. 2008. The integrated microbial genomes (IMG) system in 2007: Data content and analysis tool extensions. Nucleic Acids Res. 36(Database issue):D528-D533. http://dx.doi.org/10.1093/nar/gkm846.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Markowitz, V.M.1
Szeto, E.2
Palaniappan, K.3
Grechkin, Y.4
Chu, K.5
Chen, I.M.6
Dubchak, I.7
Anderson, I.8
Lykidis, A.9
Mavromatis, K.10
Ivanova, N.N.11
Kyrpides, N.C.12
-
5
-
-
84859574738
-
Antibiotic resistance is prevalent in an isolated cave microbiome
-
Bhullar K, Waglechner N, Pawlowski A, Koteva K, Banks ED, Johnston MD, Barton HA, Wright GD. 2012. Antibiotic resistance is prevalent in an isolated cave microbiome. PLoS One 7:e34953. http://dx.doi.org/10.1371/journal.pone. 0034953.
-
(2012)
PLoS One
, vol.7
-
-
Bhullar, K.1
Waglechner, N.2
Pawlowski, A.3
Koteva, K.4
Banks, E.D.5
Johnston, M.D.6
Barton, H.A.7
Wright, G.D.8
-
6
-
-
80053130409
-
Antibiotic resistance is ancient
-
D'Costa VM, King CE, Kalan L, Morar M, Sung WW, Schwarz C, Froese D, Zazula G, Calmels F, Debruyne R, Golding GB, Poinar HN, Wright GD. 2011. Antibiotic resistance is ancient. Nature 477:457-461. http://dx.doi.org/10.1038/ nature10388.
-
(2011)
Nature
, vol.477
, pp. 457-461
-
-
D'Costa, V.M.1
King, C.E.2
Kalan, L.3
Morar, M.4
Sung, W.W.5
Schwarz, C.6
Froese, D.7
Zazula, G.8
Calmels, F.9
Debruyne, R.10
Golding, G.B.11
Poinar, H.N.12
Wright, G.D.13
-
7
-
-
33846117964
-
Antibiotic Resistance Genes Online (ARGO): A database on vancomycin and beta-lactam resistance genes
-
Scaria J, Chandramouli U, Verma SK. 2005. Antibiotic Resistance Genes Online (ARGO): A database on vancomycin and beta-lactam resistance genes. Bioinformation 1:5-7. http://dx.doi.org/10.6026/97320630001005.
-
(2005)
Bioinformation
, vol.1
, pp. 5-7
-
-
Scaria, J.1
Chandramouli, U.2
Verma, S.K.3
-
8
-
-
33846044584
-
MvirDB - A microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications
-
Database issue
-
Zhou CE, Smith J, Lam M, Zemla A, Dyer MD, Slezak T. 2007. MvirDB - a microbial database of protein toxins, virulence factors and antibiotic resistance genes for bio-defence applications. Nucleic Acids Res. 35(Database issue):D391-D394. http://dx.doi.org/10.1093/nar/gkl791.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Zhou, C.E.1
Smith, J.2
Lam, M.3
Zemla, A.4
Dyer, M.D.5
Slezak, T.6
-
9
-
-
58149183697
-
ARDB - antibiotic resistance genes database
-
Database issue
-
Liu B, Pop M. 2009. ARDB - Antibiotic Resistance Genes Database. Nucleic Acids Res. 37(Database issue):D443-D447. http://dx.doi.org/10.1093/nar/gkn656.
-
(2009)
Nucleic Acids Res
, vol.37
-
-
Liu, B.1
Pop, M.2
-
10
-
-
84867587461
-
Identification of acquired antimicrobial resistance genes
-
Zankari E, Hasman H, Cosentino S, Vestergaard M, Rasmussen S, Lund O, Aarestrup FM, Larsen MV. 2012. Identification of acquired antimicrobial resistance genes. J. Antimicrob. Chemother. 67:2640-2644. http://dx.doi.org/10. 1093/jac/dks261.
-
(2012)
J. Antimicrob. Chemother
, vol.67
, pp. 2640-2644
-
-
Zankari, E.1
Hasman, H.2
Cosentino, S.3
Vestergaard, M.4
Rasmussen, S.5
Lund, O.6
Aarestrup, F.M.7
Larsen, M.V.8
-
11
-
-
84879017399
-
The comprehensive antibiotic resistance database
-
McArthur AG, Waglechner N, Nizam F, Yan A, Azad MA, Baylay AJ, Bhullar K, Canova MJ, De PG, Ejim L, Kalan L, King AM, Koteva K, Morar M, Mulvey MR, O'Brien JS, Pawlowski AC, Piddock LJ, Spanogiannopoulos P, Sutherland AD, Tang I, Taylor PL, Thaker M, Wang W, Yan M, Yu T, Wright GD. 2013. The comprehensive antibiotic resistance database. Antimicrob. Agents Chemother. 57:3348-3357. http://dx.doi.org/10.1128/AAC.00419-13.
-
(2013)
Antimicrob. Agents Chemother
, vol.57
, pp. 3348-3357
-
-
McArthur, A.G.1
Waglechner, N.2
Nizam, F.3
Yan, A.4
Azad, M.A.5
Baylay, A.J.6
Bhullar, K.7
Canova, M.J.8
De, P.G.9
Ejim, L.10
Kalan, L.11
King, A.M.12
Koteva, K.13
Morar, M.14
Mulvey, M.R.15
O'Brien, J.S.16
Pawlowski, A.C.17
Piddock, L.J.18
Spanogiannopoulos, P.19
Sutherland, A.D.20
Tang, I.21
Taylor, P.L.22
Thaker, M.23
Wang, W.24
Yan, M.25
Yu, T.26
Wright, G.D.27
more..
-
12
-
-
34447513153
-
Molecular mechanisms of resistance to antibiotics in Bartonella bacilliformis
-
Biswas S, Raoult D, Rolain JM. 2007. Molecular mechanisms of resistance to antibiotics in Bartonella bacilliformis. J. Antimicrob. Chemother. :1065-1070. http://dx.doi.org/10.1093/jac/dkm105.
-
(2007)
J. Antimicrob. Chemother.
, pp. 1065-1070
-
-
Biswas, S.1
Raoult, D.2
Rolain, J.M.3
-
13
-
-
2342525087
-
Epidemiology of macrolide and/or lincosamide resistant Streptococcus pneumoniae clinical isolates with ribosomal mutations
-
Doktor SZ, Shortridge VD, Beyer JM, Flamm RK. 2004. Epidemiology of macrolide and/or lincosamide resistant Streptococcus pneumoniae clinical isolates with ribosomal mutations. Diagn. Microbiol. Infect. Dis. 49: 47-52. http://dx.doi.org/10.1016/S0732-8893(03)00130-5.
-
(2004)
Diagn. Microbiol. Infect. Dis.
, vol.49
, pp. 47-52
-
-
Doktor, S.Z.1
Shortridge, V.D.2
Beyer, J.M.3
Flamm, R.K.4
-
14
-
-
84861558524
-
Sequence analysis for detection of first-line drug resistance in Mycobacterium tuberculosis strains from a highincidence setting
-
Feuerriegel S, Oberhauser B, George AG, Dafae F, Richter E, Rusch- Gerdes S, Niemann S. 2012. Sequence analysis for detection of first-line drug resistance in Mycobacterium tuberculosis strains from a highincidence setting. BMC Microbiol. 12:90. http://dx.doi.org/10.1186/1471-2180-12-90.
-
(2012)
BMC Microbiol.
, vol.12
, pp. 90
-
-
Feuerriegel, S.1
Oberhauser, B.2
George, A.G.3
Dafae, F.4
Richter, E.5
Rusch- Gerdes, S.6
Niemann, S.7
-
15
-
-
31344459012
-
A pmrA constitutive mutant sensitizes Escherichia coli to deoxycholic acid
-
Froelich JM, Tran K, Wall D. 2006. A pmrA constitutive mutant sensitizes Escherichia coli to deoxycholic acid. J. Bacteriol. 188:1180-1183. http://dx.doi.org/10.1128/JB.188.3.1180-1183.2006.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 1180-1183
-
-
Froelich, J.M.1
Tran, K.2
Wall, D.3
-
16
-
-
24144489761
-
Accumulation of mutations in both gyrB and parE genes is associated with high-level resistance to novobiocin in Staphylococcus aureus
-
Fujimoto-Nakamura M, Ito H, Oyamada Y, Nishino T, Yamagishi J. 2005. Accumulation of mutations in both gyrB and parE genes is associated with high-level resistance to novobiocin in Staphylococcus aureus. Antimicrob. Agents Chemother. 49:3810-3815. http://dx.doi.org/10.1128/AAC.49.9.3810-3815.2005.
-
(2005)
Antimicrob. Agents Chemother.
, vol.49
, pp. 3810-3815
-
-
Fujimoto-Nakamura, M.1
Ito, H.2
Oyamada, Y.3
Nishino, T.4
Yamagishi, J.5
-
17
-
-
79960458842
-
Genetic analysis of new 16S rRNA mutations conferring aminoglycoside resistance in Mycobacterium abscessus
-
Nessar R, Reyrat JM, Murray A, Gicquel B. 2011. Genetic analysis of new 16S rRNA mutations conferring aminoglycoside resistance in Mycobacterium abscessus. J. Antimicrob. Chemother. 66:1719-1724. http://dx.doi.org/10.1093/ jac/dkr209.
-
(2011)
J. Antimicrob. Chemother.
, vol.66
, pp. 1719-1724
-
-
Nessar, R.1
Reyrat, J.M.2
Murray, A.3
Gicquel, B.4
-
18
-
-
78650195466
-
Aminoglycoside modifying enzymes
-
Ramirez MS, Tolmasky ME. 2010. Aminoglycoside modifying enzymes. Drug Resist. Updat. 13:151-171. http://dx.doi.org/10.1016/j.drup.2010.08.003.
-
(2010)
Drug Resist. Updat.
, vol.13
, pp. 151-171
-
-
Ramirez, M.S.1
Tolmasky, M.E.2
-
19
-
-
80052904114
-
Characteristics of embB mutations in multidrug-resistant mycobacterium tuberculosis isolates in henan, China
-
Shi D, Li L, Zhao Y, Jia Q, Li H, Coulter C, Jin Q, Zhu G. 2011. Characteristics of embB mutations in multidrug-resistant Mycobacterium tuberculosis isolates in Henan, China. J. Antimicrob. Chemother. 66: 2240-2247. http://dx.doi.org/10.1093/jac/dkr284.
-
(2011)
J. Antimicrob. Chemother.
, vol.66
, pp. 2240-2247
-
-
Shi, D.1
Li, L.2
Zhao, Y.3
Jia, Q.4
Li, H.5
Coulter, C.6
Jin, Q.7
Zhu, G.8
-
20
-
-
79952104933
-
Phenotypic and genotypic characterization of beta-lactam resistance in Klebsiella pneumoniae isolated from swine
-
Zou LK, Wang HN, Zeng B, Zhang AY, Li JN, Li XT, Tian GB, Wei K, Zhou YS, Xu CW, Yang ZR. 2011. Phenotypic and genotypic characterization of beta-lactam resistance in Klebsiella pneumoniae isolated from swine. Vet. Microbiol. 149:139-146. http://dx.doi.org/10.1016/j.vetmic.2010.09.030.
-
(2011)
Vet. Microbiol.
, vol.149
, pp. 139-146
-
-
Zou, L.K.1
Wang, H.N.2
Zeng, B.3
Zhang, A.Y.4
Li, J.N.5
Li, X.T.6
Tian, G.B.7
Wei, K.8
Zhou, Y.S.9
Xu, C.W.10
Yang, Z.R.11
-
21
-
-
19544371363
-
A double mutation in the gyrA gene is necessary to produce high levels of resistance to moxifloxacin in Campylobacter spp. Clinical isolates
-
Ruiz J, Moreno A, Jimenez de Anta MT, Vila J. 2005. A double mutation in the gyrA gene is necessary to produce high levels of resistance to moxifloxacin in Campylobacter spp. clinical isolates. Int. J. Antimicrob. Agents 25:542-545. http://dx.doi.org/10.1016/j.ijantimicag.2004.10.016.
-
(2005)
Int. J. Antimicrob. Agents
, vol.25
, pp. 542-545
-
-
Ruiz, J.1
Moreno, A.2
Jimenez De Anta, M.T.3
Vila, J.4
-
23
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
-
(1990)
J. Mol. Biol.
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
24
-
-
84862564324
-
RmtF, a new member of the aminoglycoside resistance 16S rRNA N7 G1405 methyltransferase family
-
Galimand M, Courvalin P, Lambert T. 2012. rmtF, a new member of the aminoglycoside resistance 16S rRNA N7 G1405 methyltransferase family. Antimicrob. Agents Chemother. 56:3960-3962. http://dx.doi.org/10.1128/AAC.00660- 12.
-
(2012)
Antimicrob. Agents Chemother.
, vol.56
, pp. 3960-3962
-
-
Galimand, M.1
Courvalin, P.2
Lambert, T.3
-
25
-
-
0025008960
-
Ribosomal RNA and protein mutants resistant to spectinomycin
-
Bilgin N, Richter AA, Ehrenberg M, Dahlberg AE, Kurland CG. 1990. Ribosomal RNA and protein mutants resistant to spectinomycin. EMBO J. 9:735-739.
-
(1990)
EMBO J.
, vol.9
, pp. 735-739
-
-
Bilgin, N.1
Richter, A.A.2
Ehrenberg, M.3
Dahlberg, A.E.4
Kurland, C.G.5
-
26
-
-
77953523940
-
Activation of PmrA inhibits lpxT-dependent phosphorylation of lipid A promoting resistance to antimicrobial peptides
-
Herrera CM, Hankins JV, Trent MS. 2010. Activation of PmrA inhibits lpxT-dependent phosphorylation of lipid A promoting resistance to antimicrobial peptides. Mol. Microbiol. 76:1444-1460. http://dx.doi.org/10.1111/j.1365-2958. 2010.07150.x.
-
(2010)
Mol. Microbiol.
, vol.76
, pp. 1444-1460
-
-
Herrera, C.M.1
Hankins, J.V.2
Trent, M.S.3
-
27
-
-
0346655236
-
PmrAB, a two-component regulatory system of Pseudomonas aeruginosa that modulates resistance to cationic antimicrobial peptides and addition of aminoarabinose to lipid A
-
Moskowitz SM, Ernst RK, Miller SI. 2004. PmrAB, a two-component regulatory system of Pseudomonas aeruginosa that modulates resistance to cationic antimicrobial peptides and addition of aminoarabinose to lipid A. J. Bacteriol. 186:575-579. http://dx.doi.org/10.1128/JB.186.2.575-579.2004.
-
(2004)
J. Bacteriol.
, vol.186
, pp. 575-579
-
-
Moskowitz, S.M.1
Ernst, R.K.2
Miller, S.I.3
-
28
-
-
84861998997
-
Acquired antibiotic resistance genes: An overview
-
van Hoek AH, Mevius D, Guerra B, Mullany P, Roberts AP, Aarts HJ. 2011. Acquired antibiotic resistance genes: An overview. Front. Microbiol. 2:203. http://dx.doi.org/10.3389/fmicb.2011.00203.
-
(2011)
Front. Microbiol.
, vol.2
, pp. 203
-
-
Van Hoek, A.H.1
Mevius, D.2
Guerra, B.3
Mullany, P.4
Roberts, A.P.5
Aarts, H.J.6
-
29
-
-
84887524784
-
Comparative genomic analysis of rapid evolution of anextreme-drug- resistant Acinetobacter baumannii clone
-
Tan SY, Chua SL, Liu Y, Hoiby N, Andersen LP, Givskov M, Song Z, Yang L. 2013. Comparative genomic analysis of rapid evolution of anextreme-drug- resistant Acinetobacter baumannii clone. Genome Biol. Evol. 5:807-818. http://dx.doi.org/10.1093/gbe/evt047.
-
(2013)
Genome Biol. Evol.
, vol.5
, pp. 807-818
-
-
Tan, S.Y.1
Chua, S.L.2
Liu, Y.3
Hoiby, N.4
Andersen, L.P.5
Givskov, M.6
Song, Z.7
Yang, L.8
-
30
-
-
84875265483
-
Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing
-
Zankari E, Hasman H, Kaas RS, Seyfarth AM, Agerso Y, Lund O, Larsen MV, Aarestrup FM. 2013. Genotyping using whole-genome sequencing is a realistic alternative to surveillance based on phenotypic antimicrobial susceptibility testing. J. Antimicrob. Chemother. 68:771-777. http://dx.doi.org/10.1093/jac/ dks496.
-
(2013)
J. Antimicrob. Chemother.
, vol.68
, pp. 771-777
-
-
Zankari, E.1
Hasman, H.2
Kaas, R.S.3
Seyfarth, A.M.4
Agerso, Y.5
Lund, O.6
Larsen, M.V.7
Aarestrup, F.M.8
|