메뉴 건너뛰기




Volumn 210, Issue 3, 2018, Pages 1075-1088

Effects of transmission bottlenecks on the diversity of influenza a virus

Author keywords

Adaptation; Disease transmission; Influenza; Life history; Mutation

Indexed keywords

ADAPTIVE IMMUNITY; ARTICLE; CELL BUDDING; CELL DEATH; CONTROLLED STUDY; DISEASE TRANSMISSION; EPITHELIUM CELL; GENE MUTATION; GENETIC VARIABILITY; INFLUENZA A VIRUS; INNATE IMMUNITY; NONHUMAN; PRIORITY JOURNAL; STOCHASTIC MODEL; TARGET CELL; VIRION; VIRUS PARTICLE; VIRUS SHEDDING; BIOLOGICAL MODEL; GENETIC VARIATION; GENETICS; HUMAN; INFLUENZA; MARKOV CHAIN; MUTATION; PHYSIOLOGY; TRANSMISSION;

EID: 85056288760     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.118.301510     Document Type: Article
Times cited : (11)

References (72)
  • 1
    • 84936817692 scopus 로고    scopus 로고
    • Analysis of bottlenecks in experimental models of infection
    • Abel, S., P. A. zur Wiesch, B. Davis, and M. Waldor, 2015 Analysis of bottlenecks in experimental models of infection. PLoS Pathog. 11: e1004823. https://doi.org/10.1371/journal.ppat.1004823
    • (2015) Plos Pathog , vol.11
    • Abel, S.1    Zur Wiesch, P.A.2    Davis, B.3    Waldor, M.4
  • 2
    • 77957156495 scopus 로고    scopus 로고
    • Risk factors for the evolutionary emergence of pathogens
    • cor-rigenda: J. R. Soc. Interface 8: 1064 (2011)
    • Alexander, H., and T. Day, 2010 Risk factors for the evolutionary emergence of pathogens. J. R. Soc. Interface 7: 1455–1474 [cor-rigenda: J. R. Soc. Interface 8: 1064 (2011)]. https://doi.org/10.1098/rsif.2010.0123
    • (2010) J. R. Soc. Interface , vol.7 , pp. 1455-1474
    • Alexander, H.1    Day, T.2
  • 3
    • 47349097264 scopus 로고    scopus 로고
    • Fixation probabilities depend on life history: Fecundity, generation time and survival in a burst-death model
    • Alexander, H., and L. Wahl, 2008 Fixation probabilities depend on life history: fecundity, generation time and survival in a burst-death model. Evolution 62: 1600–1609. https://doi.org/10.1111/j.1558-5646.2008.00396.x
    • (2008) Evolution , vol.62 , pp. 1600-1609
    • Alexander, H.1    Wahl, L.2
  • 4
    • 58549116149 scopus 로고    scopus 로고
    • Virulence evolution and the trade-off hypothesis: History, current state of affairs and the future
    • Alizon, S., A. Hurfurd, N. Mideo, and M. Van Baalen, 2009 Virulence evolution and the trade-off hypothesis: history, current state of affairs and the future. J. Evol. Biol. 22: 245–259. https://doi.org/10.1111/j.1420-9101.2008.01658.x
    • (2009) J. Evol. Biol. , vol.22 , pp. 245-259
    • Alizon, S.1    Hurfurd, A.2    Mideo, N.3    van Baalen, M.4
  • 5
    • 0347185345 scopus 로고    scopus 로고
    • The role of evolution in the emergence of infectious diseases
    • Antia, R., R. Regoes, J. Koella, and C. Bergstrom, 2003 The role of evolution in the emergence of infectious diseases. Nature 426: 658–661. https://doi.org/10.1038/nature02104
    • (2003) Nature , vol.426 , pp. 658-661
    • Antia, R.1    Regoes, R.2    Koella, J.3    Bergstrom, C.4
  • 6
    • 33746190701 scopus 로고    scopus 로고
    • Kinetics of influenza A virus infection in humans
    • Baccam, P., C. Beauchemin, C. A. Macken, F. G. Hayden, and A. S. Perelson, 2006 Kinetics of influenza A virus infection in humans. J. Virol. 80: 7590–7599. https://doi.org/10.1128/JVI. 01623-05
    • (2006) J. Virol. , vol.80 , pp. 7590-7599
    • Baccam, P.1    Beauchemin, C.2    Macken, C.A.3    Hayden, F.G.4    Perelson, A.S.5
  • 7
    • 79952567961 scopus 로고    scopus 로고
    • A review of mathematical models of influenza A infections within a host or cell culture: Lessons learned and challenges ahead
    • Beauchemin, C., and A. Handel, 2011 A review of mathematical models of influenza A infections within a host or cell culture: lessons learned and challenges ahead. BMC Public Health 11: S7. https://doi.org/10.1186/1471-2458-11-S1-S7
    • (2011) BMC Public Health , vol.11 , pp. 7
    • Beauchemin, C.1    Handel, A.2
  • 8
    • 7644242473 scopus 로고    scopus 로고
    • A simple cellular automaton model for influenza A viral infections
    • Beauchemin, C., J. Samuel, and J. Tuszynski, 2005 A simple cellular automaton model for influenza A viral infections. J. Theor. Biol. 232: 223–234. https://doi.org/10.1016/j.jtbi.2004.08.001
    • (2005) J. Theor. Biol. , vol.232 , pp. 223-234
    • Beauchemin, C.1    Samuel, J.2    Tuszynski, J.3
  • 9
    • 0033609141 scopus 로고    scopus 로고
    • Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens
    • Bergstrom, C. T., P. McElhany, and L. A. Real, 1999 Transmission bottlenecks as determinants of virulence in rapidly evolving pathogens. Proc. Natl. Acad. Sci. USA 96: 5095–5100. https://doi.org/10.1073/pnas.96.9.5095
    • (1999) Proc. Natl. Acad. Sci. USA , vol.96 , pp. 5095-5100
    • Bergstrom, C.T.1    McElhany, P.2    Real, L.A.3
  • 10
    • 84907661333 scopus 로고    scopus 로고
    • Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: A systematic review of the literature
    • Biggerstaff, M., S. Cauchemez, C. Reed, M. Gambhir, and L. Finelli, 2014 Estimates of the reproduction number for seasonal, pandemic, and zoonotic influenza: a systematic review of the literature. BMC Infect. Dis. 14: 480. https://doi.org/10.1186/1471-2334-14-480
    • (2014) BMC Infect. Dis. , vol.14 , pp. 480
    • Biggerstaff, M.1    Cauchemez, S.2    Reed, C.3    Gambhir, M.4    Finelli, L.5
  • 11
    • 0028338689 scopus 로고
    • Mathematical model of antiviral immune response III. Influenza A virus infection
    • Bocharov, G., and A. Romanyukha, 1994 Mathematical model of antiviral immune response III. Influenza A virus infection. J. Theor. Biol. 167: 323–360. https://doi.org/10.1006/jtbi. 1994.1074
    • (1994) J. Theor. Biol. , vol.167 , pp. 323-360
    • Bocharov, G.1    Romanyukha, A.2
  • 12
    • 84944055938 scopus 로고    scopus 로고
    • Modeling influenza virus infection: A roadmap for influenza research
    • Boianelli, A., V. K. Nguyen, T. Ebensen, K. Schulze, E. Wilk et al., 2015 Modeling influenza virus infection: a roadmap for influenza research. Viruses 7: 5274–5304. https://doi.org/10.3390/v7102875
    • (2015) Viruses , vol.7 , pp. 5274-5304
    • Boianelli, A.1    Nguyen, V.K.2    Ebensen, T.3    Schulze, K.4    Wilk, E.5
  • 13
    • 51449086295 scopus 로고    scopus 로고
    • The biology of influenza viruses
    • Bouvier, N. M., and P. Palese, 2008 The biology of influenza viruses. Vaccine 26: D49–D53. https://doi.org/10.1016/j.vaccine. 2008.07.039
    • (2008) Vaccine , vol.26 , pp. D49-D53
    • Bouvier, N.M.1    Palese, P.2
  • 14
    • 0033055004 scopus 로고    scopus 로고
    • Evolution by small steps and rugged landscapes in the RNA virus phi6
    • Burch, C. L., and L. Chao, 1999 Evolution by small steps and rugged landscapes in the RNA virus phi6. Genetics 151: 921– 927.
    • (1999) Genetics , vol.151 , pp. 921-927
    • Burch, C.L.1    Chao, L.2
  • 15
    • 34548611066 scopus 로고    scopus 로고
    • Influenza vaccine: The challenge of antigenic drift
    • Carrat, F., and A. Flahault, 2007 Influenza vaccine: the challenge of antigenic drift. Vaccine 25: 6852–6862. https://doi.org/10. 1016/j.vaccine.2007.07.027
    • (2007) Vaccine , vol.25 , pp. 6852-6862
    • Carrat, F.1    Flahault, A.2
  • 16
    • 42149139969 scopus 로고    scopus 로고
    • Seasonal influenza in the United States, France, and Australia: Transmission and prospects for control
    • Chowell, G., M. Miller, and C. Viboud, 2008 Seasonal influenza in the United States, France, and Australia: transmission and prospects for control. Epidemiol. Infect. 136: 852–864. https://doi. org/10.1017/S0950268807009144
    • (2008) Epidemiol. Infect. , vol.136 , pp. 852-864
    • Chowell, G.1    Miller, M.2    Viboud, C.3
  • 17
    • 35348941195 scopus 로고    scopus 로고
    • Evaluating the importance of within-and between-host selection pressures on the evolution of chronic pathogens
    • Coombs, D., M. Gilchrist, and C. Ball, 2007 Evaluating the importance of within-and between-host selection pressures on the evolution of chronic pathogens. Theor. Popul. Biol. 72: 576– 591. https://doi.org/10.1016/j.tpb.2007.08.005
    • (2007) Theor. Popul. Biol. , vol.72 , pp. 576-591
    • Coombs, D.1    Gilchrist, M.2    Ball, C.3
  • 18
    • 82755182876 scopus 로고    scopus 로고
    • Bridging scales in the evolution of infectious disease life histories: Theory
    • Day, T., S. Alizon, and N. Mideo, 2011 Bridging scales in the evolution of infectious disease life histories: theory. Evolution 65: 3448–3461. https://doi.org/10.1111/j.1558-5646.2011.01394.x
    • (2011) Evolution , vol.65 , pp. 3448-3461
    • Day, T.1    Alizon, S.2    Mideo, N.3
  • 19
    • 85010993690 scopus 로고    scopus 로고
    • Vaccination has minimal impact on the intrahost diversity of H3N2 influenza viruses
    • Debbink, K., J. T. McCrone, J. G. Petrie, R. Truscon, E. Johnson et al., 2017 Vaccination has minimal impact on the intrahost diversity of H3N2 influenza viruses. PLoS Pathog. 13: e1006194. https://doi.org/10.1371/journal.ppat.1006194
    • (2017) Plos Pathog , vol.13
    • Debbink, K.1    McCrone, J.T.2    Petrie, J.G.3    Truscon, R.4    Johnson, E.5
  • 20
    • 33847314378 scopus 로고    scopus 로고
    • Beneficial mutation–selection balance and the effect of linkage on positive selection
    • Desai, M. M., and D. S. Fisher, 2007 Beneficial mutation–selection balance and the effect of linkage on positive selection. Genetics 176: 1759–1798. https://doi.org/10.1534/genetics.106.067678
    • (2007) Genetics , vol.176 , pp. 1759-1798
    • Desai, M.M.1    Fisher, D.S.2
  • 21
    • 33847256353 scopus 로고    scopus 로고
    • The speed of evolution and maintenance of variation in asexual populations
    • Desai, M. M., D. S. Fisher, and A. W. Murray, 2007 The speed of evolution and maintenance of variation in asexual populations. Curr. Biol. 17: 385–394. https://doi.org/10.1016/j.cub.2007.01.072
    • (2007) Curr. Biol. , vol.17 , pp. 385-394
    • Desai, M.M.1    Fisher, D.S.2    Murray, A.W.3
  • 22
    • 84874514993 scopus 로고    scopus 로고
    • Assessing mathematical models of influenza infections using features of the immune response
    • Dobrovolny, H. M., M. B. Reddy, M. A. Kamal, C. R. Rayner, and C. A. Beauchemin, 2013 Assessing mathematical models of influenza infections using features of the immune response. PLoS One 8: e57088. https://doi.org/10.1371/journal. pone.0057088
    • (2013) Plos One , vol.8
    • Dobrovolny, H.M.1    Reddy, M.B.2    Kamal, M.A.3    Rayner, C.R.4    Beauchemin, C.A.5
  • 23
    • 0026729636 scopus 로고
    • Rapid fitness losses in mammalian RNA virus clones due to Muller’s ratchet
    • Duarte, E., D. Clarke, A. Moya, E. Domingo, and J. Holland, 1992 Rapid fitness losses in mammalian RNA virus clones due to Muller’s ratchet. Proc. Natl. Acad. Sci. USA 89: 6015– 6019. https://doi.org/10.1073/pnas.89.13.6015
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 6015-6019
    • Duarte, E.1    Clarke, D.2    Moya, A.3    Domingo, E.4    Holland, J.5
  • 24
    • 0027192909 scopus 로고
    • Many-trillionfold amplification of single RNA virus particles fails to overcome the Muller’s ratchet effect
    • Duarte, E. A., D. K. Clarke, A. Moya, S. F. Elena, E. Domingo et al., 1993 Many-trillionfold amplification of single RNA virus particles fails to overcome the Muller’s ratchet effect. J. Virol. 67: 3620–3623.
    • (1993) J. Virol. , vol.67 , pp. 3620-3623
    • Duarte, E.A.1    Clarke, D.K.2    Moya, A.3    Elena, S.F.4    Domingo, E.5
  • 25
    • 0002315524 scopus 로고    scopus 로고
    • Transmission bottlenecks and the evolution of fitness in rapidly evolving RNA viruses
    • Elena, S. F., R. Sanjuán, A. V. Bordería, and P. E. Turner, 2001 Transmission bottlenecks and the evolution of fitness in rapidly evolving RNA viruses. Infect. Genet. Evol. 1: 41–48. https://doi.org/10.1016/S1567-1348(01)00006-5
    • (2001) Infect. Genet. Evol. , vol.1 , pp. 41-48
    • Elena, S.F.1    Sanjuán, R.2    Bordería, A.V.3    Turner, P.E.4
  • 26
    • 34447546660 scopus 로고    scopus 로고
    • The distribution of fitness effects of new mutations
    • Eyre-Walker, A., and P. D. Keightley, 2007 The distribution of fitness effects of new mutations. Nat. Rev. Genet. 8: 610–618. https://doi.org/10.1038/nrg2146
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 610-618
    • Eyre-Walker, A.1    Keightley, P.D.2
  • 27
    • 80052604121 scopus 로고    scopus 로고
    • Modeling the effects of vaccination and treatment on pandemic influenza
    • Feng, Z., S. Towers, and Y. Yang, 2011 Modeling the effects of vaccination and treatment on pandemic influenza. AAPS J. 13: 427–437. https://doi.org/10.1208/s12248-011-9284-7
    • (2011) AAPS J , vol.13 , pp. 427-437
    • Feng, Z.1    Towers, S.2    Yang, Y.3
  • 30
    • 0036402639 scopus 로고    scopus 로고
    • Modeling host-parasite coevo-lution: A nested approach based on mechanistic models
    • Gilchrist, M., and A. Sasaki, 2002 Modeling host-parasite coevo-lution: a nested approach based on mechanistic models. J. Theor. Biol. 218: 289–308. https://doi.org/10.1006/jtbi.2002.3076
    • (2002) J. Theor. Biol. , vol.218 , pp. 289-308
    • Gilchrist, M.1    Sasaki, A.2
  • 32
    • 61849084110 scopus 로고    scopus 로고
    • Surviving the bottleneck: Transmission mutants and of microbial populations
    • Handel, A., and M. R. Bennett, 2008 Surviving the bottleneck: transmission mutants and of microbial populations. Genetics 180: 2193–2200. https://doi.org/10.1534/genetics.108.093013
    • (2008) Genetics , vol.180 , pp. 2193-2200
    • Handel, A.1    Bennett, M.R.2
  • 33
    • 0345830674 scopus 로고    scopus 로고
    • Evolutionary dynamics of escape from biomedical intervention
    • Iwasa, Y., F. Michor, and M. Nowak, 2003 Evolutionary dynamics of escape from biomedical intervention. Proc. Biol. Sci. 270: 2573–2578. https://doi.org/10.1098/rspb.2003.2539
    • (2003) Proc. Biol. Sci. , vol.270 , pp. 2573-2578
    • Iwasa, Y.1    Michor, F.2    Nowak, M.3
  • 34
    • 84931565184 scopus 로고    scopus 로고
    • Bottlenecks in HIV-1 transmission: Insights from the study of founder viruses
    • Joseph, S. B., R. Swanstrom, A. D. M. Kashuba, and M. S. Cohen, 2015 Bottlenecks in HIV-1 transmission: insights from the study of founder viruses. Nat. Rev. Microbiol. 13: 414–425. https://doi.org/10.1038/nrmicro3471
    • (2015) Nat. Rev. Microbiol. , vol.13 , pp. 414-425
    • Joseph, S.B.1    Swanstrom, R.2    Kashuba, A.D.M.3    Cohen, M.S.4
  • 36
    • 0032104647 scopus 로고    scopus 로고
    • Influence of host species on the evolution of the non-structural (NS) gene of influenza A viruses
    • Kawaoka, Y., O. T. Gorman, T. Ito, K. Wells, R. O. Donis et al., 1998 Influence of host species on the evolution of the non-structural (NS) gene of influenza A viruses. Virus Res. 55: 143–156. https://doi.org/10.1016/S0168-1702(98)00038-0
    • (1998) Virus Res , vol.55 , pp. 143-156
    • Kawaoka, Y.1    Gorman, O.T.2    Ito, T.3    Wells, K.4    Donis, R.O.5
  • 37
    • 84925308704 scopus 로고    scopus 로고
    • Repeatability of adaptation in experimental populations of different sizes
    • Lachapelle, J., J. Reid, and N. Colegrave, 2015 Repeatability of adaptation in experimental populations of different sizes. Proc. Biol. Sci. 282: 20143033. https://doi.org/10.1098/rspb.2014. 3033
    • (2015) Proc. Biol. Sci. , vol.282 , pp. 20143033
    • Lachapelle, J.1    Reid, J.2    Colegrave, N.3
  • 38
    • 0017239112 scopus 로고
    • Influenza virus population dynamics in the respiratory tract of experimentally infected mice
    • Larson, E. W., J. W. Dominik, A. H. Rowberg, and G. A. Higbee, 1976 Influenza virus population dynamics in the respiratory tract of experimentally infected mice. Infect. Immun. 13: 438– 447.
    • (1976) Infect. Immun. , vol.13 , pp. 438-447
    • Larson, E.W.1    Dominik, J.W.2    Rowberg, A.H.3    Higbee, G.A.4
  • 39
    • 77951883726 scopus 로고    scopus 로고
    • Viral shedding and clinical illness in naturally acquired influenza virus infections
    • Lau, L. L., B. J. Cowling, V. J. Fang, K.-H. Chan, E. H. Lau et al., 2010 Viral shedding and clinical illness in naturally acquired influenza virus infections. J. Infect. Dis. 201: 1509–1516. https://doi.org/10.1086/652241
    • (2010) J. Infect. Dis. , vol.201 , pp. 1509-1516
    • Lau, L.L.1    Cowling, B.J.2    Fang, V.J.3    Chan, K.-H.4    Lau, E.H.5
  • 40
    • 85034659259 scopus 로고    scopus 로고
    • The impact of population bottlenecks on microbial adaptation
    • LeClair, J. S., and L. M. Wahl, 2017 The impact of population bottlenecks on microbial adaptation. J. Stat. Phys. 172: 114– 125. https://doi.org/10.1007/s10955-017-1924-6
    • (2017) J. Stat. Phys. , vol.172 , pp. 114-125
    • Leclair, J.S.1    Wahl, L.M.2
  • 41
    • 0026070664 scopus 로고
    • Transport of incoming influenza virus nucleocapsids into the nucleus
    • Martin, K., and A. Helenius, 1991 Transport of incoming influenza virus nucleocapsids into the nucleus. J. Virol. 65: 232–244.
    • (1991) J. Virol. , vol.65 , pp. 232-244
    • Martin, K.1    Helenius, A.2
  • 42
    • 79955553616 scopus 로고    scopus 로고
    • A mathematical framework for estimating pathogen transmission fitness and inoculum size using data from a competitive mixtures animal model
    • McCaw, J. M., N. Arinaminpathy, A. C. Hurt, J. McVernon, and A. R. McLean, 2011 A mathematical framework for estimating pathogen transmission fitness and inoculum size using data from a competitive mixtures animal model. PLOS Comput. Biol. 7: e1002026. https://doi.org/10.1371/journal.pcbi.1002026
    • (2011) PLOS Comput. Biol. , vol.7
    • McCaw, J.M.1    Arinaminpathy, N.2    Hurt, A.C.3    McVernon, J.4    McLean, A.R.5
  • 43
    • 85051323990 scopus 로고    scopus 로고
    • Stochastic processes constrain the within and between host evolution of influenza virus
    • McCrone, J. T., R. J. Woods, E. T. Martin, R. E. Malosh, A. S. Monto et al., 2018 Stochastic processes constrain the within and between host evolution of influenza virus. Elife 7: e35962. https://doi.org/10.7554/eLife.35962
    • (2018) Elife , vol.7
    • McCrone, J.T.1    Woods, R.J.2    Martin, E.T.3    Malosh, R.E.4    Monto, A.S.5
  • 44
    • 49049118638 scopus 로고    scopus 로고
    • Linking within-and between-host dynamics in the evolutionary epidemiology of infectious diseases
    • Mideo, N., S. Alizon, and T. Day, 2008 Linking within-and between-host dynamics in the evolutionary epidemiology of infectious diseases. Trends Ecol. Evol. 23: 511–517. https://doi.org/10.1016/j.tree.2008.05.009
    • (2008) Trends Ecol. Evol. , vol.23 , pp. 511-517
    • Mideo, N.1    Alizon, S.2    Day, T.3
  • 45
    • 33645235646 scopus 로고    scopus 로고
    • Comparison of the mutation rates of human influenza A and B viruses
    • Nobusawa, E., and K. Sato, 2006 Comparison of the mutation rates of human influenza A and B viruses. J. Virol. 80: 3675– 3678. https://doi.org/10.1128/JVI.80.7.3675-3678.2006
    • (2006) J. Virol. , vol.80 , pp. 3675-3678
    • Nobusawa, E.1    Sato, K.2
  • 46
    • 0028922116 scopus 로고
    • Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitness
    • Novella, I. S., S. F. Elena, A. Moya, E. Domingo, and J. J. Holland, 1995 Size of genetic bottlenecks leading to virus fitness loss is determined by mean initial population fitness. J. Virol. 69: 2869–2872.
    • (1995) J. Virol. , vol.69 , pp. 2869-2872
    • Novella, I.S.1    Elena, S.F.2    Moya, A.3    Domingo, E.4    Holland, J.J.5
  • 47
    • 0029983967 scopus 로고    scopus 로고
    • Repeated transfer of small RNA virus populations leading to balanced fitness with infrequent stochastic drift
    • Novella, I. S., S. F. Elena, A. Moya, E. Domingo, and J. J. Holland, 1996 Repeated transfer of small RNA virus populations leading to balanced fitness with infrequent stochastic drift. Mol. Gen. Genet. 252: 733–738. https://doi.org/10.1007/BF02173980
    • (1996) Mol. Gen. Genet. , vol.252 , pp. 733-738
    • Novella, I.S.1    Elena, S.F.2    Moya, A.3    Domingo, E.4    Holland, J.J.5
  • 48
    • 0030994606 scopus 로고    scopus 로고
    • The probability of fixation in populations of changing size
    • Otto, S. P., and M. C. Whitlock, 1997 The probability of fixation in populations of changing size. Genetics 146: 723–733.
    • (1997) Genetics , vol.146 , pp. 723-733
    • Otto, S.P.1    Whitlock, M.C.2
  • 49
    • 56049123655 scopus 로고    scopus 로고
    • Fixation probabilities for lytic viruses: The attachment-lysis model
    • Patwa, Z., and L. Wahl, 2008 Fixation probabilities for lytic viruses: the attachment-lysis model. Genetics 180: 459–470. https://doi.org/10.1534/genetics.108.090555
    • (2008) Genetics , vol.180 , pp. 459-470
    • Patwa, Z.1    Wahl, L.2
  • 50
    • 67650744273 scopus 로고    scopus 로고
    • The impact of host-cell dynamics on the fixation probability for lytic viruses
    • Patwa, Z., and L. Wahl, 2009 The impact of host-cell dynamics on the fixation probability for lytic viruses. J. Theor. Biol. 259: 799– 810. https://doi.org/10.1016/j.jtbi.2009.05.008
    • (2009) J. Theor. Biol. , vol.259 , pp. 799-810
    • Patwa, Z.1    Wahl, L.2
  • 51
    • 84989265306 scopus 로고    scopus 로고
    • Connecting within-host dynamics to the rate of viral molecular evolution
    • Peck, K. M., C. H. Chan, and M. M. Tanaka, 2015 Connecting within-host dynamics to the rate of viral molecular evolution. Virus Evol. 1: vev013. https://doi.org/10.1093/ve/vev013
    • (2015) Virus Evol , vol.1
    • Peck, K.M.1    Chan, C.H.2    Tanaka, M.M.3
  • 52
    • 84869025419 scopus 로고    scopus 로고
    • The H275Y neuraminidase mutation of the pandemic A/ H1N1 influenza virus lengthens the eclipse phase and reduces viral output of infected cells, potentially compromising fitness in ferrets
    • Pinilla, L. T., B. P. Holder, Y. Abed, G. Boivin, and C. A. Beauchemin, 2012 The H275Y neuraminidase mutation of the pandemic A/ H1N1 influenza virus lengthens the eclipse phase and reduces viral output of infected cells, potentially compromising fitness in ferrets. J. Virol. 86: 10651–10660. https://doi.org/10.1128/JVI.07244-11
    • (2012) J. Virol. , vol.86 , pp. 10651-10660
    • Pinilla, L.T.1    Holder, B.P.2    Abed, Y.3    Boivin, G.4    Beauchemin, C.A.5
  • 53
    • 84956621342 scopus 로고    scopus 로고
    • Quantifying influenza virus diversity and transmission in humans
    • Poon, L. L., T. Song, R. Rosenfeld, X. Lin, M. B. Rogers et al., 2016 Quantifying influenza virus diversity and transmission in humans. Nat. Genet. 48: 195–200. https://doi.org/10.1038/ng.3479
    • (2016) Nat. Genet. , vol.48 , pp. 195-200
    • Poon, L.L.1    Song, T.2    Rosenfeld, R.3    Lin, X.4    Rogers, M.B.5
  • 54
    • 44449164435 scopus 로고    scopus 로고
    • The genomic and epidemiological dynamics of human influenza A virus
    • Rambaut, A., O. G. Pybus, M. I. Nelson, C. Viboud, J. K. Taubenberger et al., 2008 The genomic and epidemiological dynamics of human influenza A virus. Nature 453: 615–619. https://doi.org/10.1038/nature06945
    • (2008) Nature , vol.453 , pp. 615-619
    • Rambaut, A.1    Pybus, O.G.2    Nelson, M.I.3    Viboud, C.4    Taubenberger, J.K.5
  • 55
    • 0018665436 scopus 로고
    • Murine influenzal tracheitis: A model for the study of influenza and tracheal epithelial repair
    • Ramphal, R., W. Fischlschweiger, J. W. Shands, Jr., and P. A. Small, Jr., 1979 Murine influenzal tracheitis: a model for the study of influenza and tracheal epithelial repair. Am. Rev. Respir. Dis. 120: 1313–1324.
    • (1979) Am. Rev. Respir. Dis , vol.120 , pp. 1313-1324
    • Ramphal, R.1    Fischlschweiger, W.2    Shands, J.W.3    Small, P.A.4
  • 56
    • 84891628477 scopus 로고    scopus 로고
    • The effect of population bottlenecks on mutation rate evolution in asexual populations
    • Raynes, Y., A. Halstead, and P. Sniegowski, 2014 The effect of population bottlenecks on mutation rate evolution in asexual populations. J. Evol. Biol. 27: 161–169. https://doi.org/10.1111/2jeb.12284
    • (2014) J. Evol. Biol. , vol.27 , pp. 161-169
    • Raynes, Y.1    Halstead, A.2    Sniegowski, P.3
  • 57
    • 34848837297 scopus 로고    scopus 로고
    • Reservoir interactions and disease emergence
    • Reluga, T., R. Meza, D. Walton, and A. Galvani, 2007 Reservoir interactions and disease emergence. Theor. Popul. Biol. 72: 400–408. https://doi.org/10.1016/j.tpb.2007.07.001
    • (2007) Theor. Popul. Biol. , vol.72 , pp. 400-408
    • Reluga, T.1    Meza, R.2    Walton, D.3    Galvani, A.4
  • 58
    • 0034142287 scopus 로고    scopus 로고
    • Early stages of influenza virus entry into Mv-1 lung cells: Involvement of dynamin
    • Roy, A.-M. M., J. S. Parker, C. R. Parrish, and G. R. Whittaker, 2000 Early stages of influenza virus entry into Mv-1 lung cells: involvement of dynamin. Virology 267: 17–28. https://doi.org/10.1006/viro.1999.0109
    • (2000) Virology , vol.267 , pp. 17-28
    • Roy, A.-M.M.1    Parker, J.S.2    Parrish, C.R.3    Whittaker, G.R.4
  • 59
    • 2942565781 scopus 로고    scopus 로고
    • The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus
    • Sanjuán, R., A. Moya, and S. F. Elena, 2004 The distribution of fitness effects caused by single-nucleotide substitutions in an RNA virus. Proc. Natl. Acad. Sci. USA 101: 8396–8401. https://doi.org/10.1073/pnas.0400146101
    • (2004) Proc. Natl. Acad. Sci. USA , vol.101 , pp. 8396-8401
    • Sanjuán, R.1    Moya, A.2    Elena, S.F.3
  • 60
    • 79952480757 scopus 로고    scopus 로고
    • Influenza A virus infection kinetics: Quantitative data and models
    • Smith, A., and A. S. Perelson, 2011 Influenza A virus infection kinetics: quantitative data and models. Wiley Interdiscip. Rev. Syst. Biol. Med. 3: 429–445. https://doi.org/10.1002/wsbm.129
    • (2011) Wiley Interdiscip. Rev. Syst. Biol. Med. , vol.3 , pp. 429-445
    • Smith, A.1    Perelson, A.S.2
  • 61
    • 85021187296 scopus 로고    scopus 로고
    • Transmission bottleneck size estimation from pathogen deep-sequencing data, with an application to human influenza A virus
    • Sobel Leonard, A., D. B. Weissman, B. Greenbaum, E. Ghedin, and K. Koelle, 2017 Transmission bottleneck size estimation from pathogen deep-sequencing data, with an application to human influenza A virus. J. Virol. 91: e00171–00187. https://doi.org/10.1128/JVI.00171-17
    • (2017) J. Virol , vol.91 , pp. e00171-e00187
    • Sobel Leonard, A.1    Weissman, D.B.2    Greenbaum, B.3    Ghedin, E.4    Koelle, K.5
  • 62
    • 0034935681 scopus 로고    scopus 로고
    • Apoptosis by influenza viruses correlates with efficiency of viral mRNA synthesis
    • Stray, S. J., and G. M. Air, 2001 Apoptosis by influenza viruses correlates with efficiency of viral mRNA synthesis. Virus Res. 77: 3–17. https://doi.org/10.1016/S0168-1702(01)00260-X
    • (2001) Virus Res , vol.77 , pp. 3-17
    • Stray, S.J.1    Air, G.M.2
  • 63
    • 13844313860 scopus 로고    scopus 로고
    • Defense mechanisms against influenza virus infection in the respiratory tract mucosa
    • Tamura, S.-I., and T. Kurata, 2004 Defense mechanisms against influenza virus infection in the respiratory tract mucosa. Jpn. J. Infect. Dis. 57: 236–247.
    • (2004) Jpn. J. Infect. Dis. , vol.57 , pp. 236-247
    • Tamura, S.-I.1    Kurata, T.2
  • 64
    • 84867018764 scopus 로고    scopus 로고
    • Evasion of influenza A viruses from innate and adaptive immune responses
    • van de Sandt, C. E., J. H. Kreijtz, and G. F. Rimmelzwaan, 2012 Evasion of influenza A viruses from innate and adaptive immune responses. Viruses 4: 1438–1476. https://doi.org/10.3390/v4091438
    • (2012) Viruses , vol.4 , pp. 1438-1476
    • van de Sandt, C.E.1    Kreijtz, J.H.2    Rimmelzwaan, G.F.3
  • 65
    • 84910682671 scopus 로고    scopus 로고
    • Influenza A virus transmission bottlenecks are defined by infection route and recipient host
    • Varble, A., R. A. Albrecht, S. Backes, M. Crumiller, N. M. Bouvier et al., 2014 Influenza A virus transmission bottlenecks are defined by infection route and recipient host. Cell Host Microbe 16: 691–700. https://doi.org/10.1016/j.chom. 2014.09.020
    • (2014) Cell Host Microbe , vol.16 , pp. 691-700
    • Varble, A.1    Albrecht, R.A.2    Backes, S.3    Crumiller, M.4    Bouvier, N.M.5
  • 67
    • 84979659104 scopus 로고    scopus 로고
    • Divergent evolution peaks under intermediate population bottlenecks during bacterial experimental evolution
    • Vogwill, T., R. L. Phillips, D. R. Gifford, and R. C. MacLean, 2016 Divergent evolution peaks under intermediate population bottlenecks during bacterial experimental evolution. Proc. Biol. Sci. 283: 20160749. https://doi.org/10.1098/rspb.2016.0749
    • (2016) Proc. Biol. Sci. , vol.283
    • Vogwill, T.1    Phillips, R.L.2    Gifford, D.R.3    Maclean, R.C.4
  • 68
    • 0035544558 scopus 로고    scopus 로고
    • The probability that beneficial mutations are lost in populations with periodic bottlenecks
    • Wahl, L., and P. J. Gerrish, 2001 The probability that beneficial mutations are lost in populations with periodic bottlenecks. Evolution 55: 2606–2610. https://doi.org/10.1111/j.0014-3820.2001.tb00772.x
    • (2001) Evolution , vol.55 , pp. 2606-2610
    • Wahl, L.1    Gerrish, P.J.2
  • 69
    • 84929009003 scopus 로고    scopus 로고
    • Survival probability of beneficial mutations in bacterial batch culture
    • Wahl, L., and A. D. Zhu, 2015 Survival probability of beneficial mutations in bacterial batch culture. Genetics 200: 309–320. https://doi.org/10.1534/genetics.114.172890
    • (2015) Genetics , vol.200 , pp. 309-320
    • Wahl, L.1    Zhu, A.D.2
  • 70
    • 0036811710 scopus 로고    scopus 로고
    • Evaluating the impact of population bottlenecks in experimental evolution
    • Wahl, L., P. J. Gerrish, and I. Saika-Voivod, 2002 Evaluating the impact of population bottlenecks in experimental evolution. Genetics 162: 961–971.
    • (2002) Genetics , vol.162 , pp. 961-971
    • Wahl, L.1    Gerrish, P.J.2    Saika-Voivod, I.3
  • 71
    • 0001178031 scopus 로고    scopus 로고
    • Orthomyxoviruses
    • B. N. Fields, and D. M. Knipe. Lippincott Williams & Wilkins, Philadelphia
    • Wright, P. F., and R. G. Webster, 2001 Orthomyxoviruses, pp. 1533–1579 in Fields Virology, edited by B. N. Fields, and D. M. Knipe. Lippincott Williams & Wilkins, Philadelphia.
    • (2001) Fields Virology , pp. 1533-1579
    • Wright, P.F.1    Webster, R.G.2
  • 72
    • 85043315189 scopus 로고    scopus 로고
    • Within-host evolution of human influenza virus
    • Xue, K. S., L. H. Moncla, T. Bedford, and J. D. Bloom, 2018 Within-host evolution of human influenza virus. Trends Microbiol. 26: 781–793. https://doi.org/10.1016/j.tim.2018.02.007
    • (2018) Trends Microbiol , vol.26 , pp. 781-793
    • Xue, K.S.1    Moncla, L.H.2    Bedford, T.3    Bloom, J.D.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.