Influence of host species on the evolution of the nonstructural (NS) gene of influenza A viruses

Virus Research

Volumn 55, Issue 2, 1998, Pages 143-156

  Kawaoka, Yoshihiro ^a,b   Gorman, Owen T ^c   Ito, Toshihiro ^d   Wells, Krisna ^a   Donis, Ruben O ^e   Castrucci, Maria R ^f   Donatelli, Isabella ^f   Webster, Robert G ^a,b  

^a St Jude Children's Research Institute   (United States)

^b UNIVERSITY OF TENNESSEE HEALTH SCIENCE CENTER   (United States)

^c U S FISH AND WILDLIFE SERVICE   (United States)

^d TOTTORI UNIVERSITY   (Japan)

^e UNIVERSITY OF NEBRASKA LINCOLN   (United States)

^f ISTITUTO SUPERIORE DI SANITÀ   (Italy)

Author keywords

Evolution; Influenza virus; NS gene

Indexed keywords

ARTICLE; BIRD; GENE SEQUENCE; HORSE; HUMAN; INFLUENZA VIRUS A; MOLECULAR EVOLUTION; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES DIFFERENCE; SWINE; VIRUS GENE;

ANIMALS; BASE SEQUENCE; CONSERVED SEQUENCE; DNA, VIRAL; EVOLUTION, MOLECULAR; GENES, VIRAL; HUMANS; INFLUENZA A VIRUS; MOLECULAR SEQUENCE DATA; MUTAGENESIS, INSERTIONAL; PHYLOGENY; SPECIES SPECIFICITY; SWINE; VIRAL NONSTRUCTURAL PROTEINS;

EID: 0032104647     PISSN: 01681702     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0168-1702(98)00038-0     Document Type: Article

References (43)

1. Adeyefa C.A.O., Quayle K., McCauley J.W. A rapid method for the analysis of influenza virus genes: Application to the reassortment of equine influenza virus genes. Virus Res. 32:1994;391-399.
2. Baez M., Taussig R., Zazra J.J., Young J.F., Palese P., Reisfeld A., Skalka A. Complete nucleotide sequence of the influenza A/PR/8/34 virus NS gene and comparison with the NS genes of the A/Udorn/72 and A/FPV/Rostock/34 strains. Nucleic Acids Res. 8:1980;5845-5858.
3. Baez M., Zazra J.J., Elliott R.M., Young J.F., Palese P. Nucleotide sequence of the influenza A/duck/Alberta/60/76 virus NS RNA: Conservation of the NS1/NS2 overlapping gene structure in a divergent influenza virus RNA segment. Virology. 113:1981;397-402.
4. Bean W.J., Sriram G., Webster R.G. Electrophoretic analysis of iodine-labeled influenza virus RNA segments. Anal. Biochem. 102:1980;228-232.
5. Bean W.J., Schell M., Katz J., Kawaoka Y., Naeve C., Gorman O., Webster R.G. Evolution of the H3 influenza virus hemagglutinin from human and nonhuman hosts. J. Virol. 66:1992;1129-1138.
6. Bennink J.R., Yewdell J.W., Smith G.L., Moss B. Anti-influenza virus cytotoxic T lymphocytes recognize the three viral polymerases and a nonstructural protein: Responsiveness to individual viral antigens is major histocompatibility complex controlled. J. Virol. 61:1987;1098-1102.
7. Buonagurio D.A., Nakada S., Fitch W.M., Palese P. Epidemiology of influenza C virus in man: Multiple evolutionary lineages and low rate of change. Virology. 153:1986;12-21.
8. Buonagurio D.A., Nakada S., Parvin J.D., Krystal M., Palese P., Fitch W.M. Evolution of human influenza A viruses over 50 years: Rapid, uniform rate of change in NS gene. Science. 232:1986;980-982.
9. Chen E.Y., Seeburg P.H. Supercoil sequencing: A fast and simple method for sequencing plasmid DNA. DNA. 4:1985;165-170.
10. Fitch, W.M., 1971. Toward defining the course of evolution: minimum change for a specific tree topology. Syst. Zool. 20, 406-416.
11. Fitch W.M., Leiter J.M.E., Li X., Palese P. Positive Darwinian evolution in human influenza A viruses. Proc. Natl. Acad. Sci. USA. 88:1991;4270-4274.
12. Fortes P., Beloso A., Ortín J. Influenza virus NS1 protein inhibits pre-mRNA splicing and blocks mRNA nucleocytoplasmic transport. EMBO J. 13:1994;704-712.
13. Gorman O.T., Bean W.J., Kawaoka Y., Webster R.G. Evolution of the nucleoprotein gene of influenza A virus. J. Virol. 64:1990;1487-1497.
14. Gorman O.T., Donis R.O., Kawaoka Y., Webster R.G. Evolution of influenza A virus PB2 genes: Implications for evolution of the ribonucleoprotein complex and origin of human influenza A virus. J. Virol. 64:1990;4893-4902.
15. Gorman O.T., Bean W.J., Kawaoka Y., Donatelli I., Guo Y., Webster R.G. Evolution of influenza A virus nucleoprotein genes: Implications for the origins of H1N1 human and classical swine viruses. J. Virol. 65:1991;3704-3714.
16. Guo Y., Wang M., Kawaoka Y., Gorman O., Ito T., Saito T., Webster R.G. Characterization of a new avian-like influenza A virus from horses in China. Virology. 188:1992;245-255.
17. Hinshaw V.S., Bean W.J., Webster R.G., Rehg J.E., Fiorelli P., Early G., Geraci J.R., St.Aubin D.J. Are seals frequently infected with avian influenza viruses? J. Virol. 51:1984;863-865.
18. Hinshaw V.S., Bean W.J., Geraci J.R., Fiorelli P., Early G., Webster R.G. Characterization of two influenza A viruses from a pilot whale. J. Virol. 58:1986;655-656.
19. Huddleston J.A., Brownlee G.G. The sequence of the nucleoprotein gene of human influenza A virus strain, A/NT/60/68. Nucleic Acids Res. 10:1982;1029-1037.
20. Ito T., Gorman O.T., Kawaoka Y., Bean W.J., Webster R.G. Evolutionary analysis of the influenza A virus M gene with comparison of the M1 and M2 proteins. J. Virol. 65:1991;5491-5498.
21. Kawaoka Y., Krauss S., Webster R.G. Avian-to-human transmission of the PB1 gene of influenza A viruses in the 1957 and 1968 pandemics. J. Virol. 63:1989;4603-4608.
22. Krystal M., Buonagurio D., Young J.F., Palese P. Sequential mutations in the NS genes of influenza virus field strains. J. Virol. 45:1983;547-554.
23. Lamb, R.A., 1989. In: Krug, R.M. (Ed.), The Influenza Viruses, 1st ed. Plenum Press, New York, pp. 1-87.
24. Lamb R.A., Lai C.J. Sequence of interrupted and uninterrupted mRNAs and cloned DNA coding for the two overlapping nonstructural proteins of influenza virus. Cell. 21:1980;475-485.
25. Lamb R.A., Lai C.J. Expression of unspliced NS1 mRNA, spliced NS2 mRNA, and a spliced chimera mRNA from cloned influenza virus NS DNA in an SV40 vector. Virology. 135:1984;139-147.
26. Lamb R.A., Choppin P.W., Chanock R.M., Lai C.J. Mapping of the two overlapping genes for polypeptides NS1 and NS2 on RNA segment 8 of influenza virus genome. Proc. Natl. Acad. Sci. USA. 77:1980;1857-1861.
27. Ludwig S., Schultz U., Mandler J., Fitch W.M., Scholtissek C. Phylogenetic relationship of the nonstructural (NS) genes of influenza A viruses. Virology. 183:1991;566-577.
28. Malim M.H., McCarn D.F., Tiley L.S., Cullen B.R. Mutational definition of the human immunodeficiency virus type 1 Rev activation domain. J. Virol. 65:1991;4248-4254.
29. Nakajima K., Nobusawa E., Ogawa T., Nakajima S. Genetic divergence of the NS genes of avian influenza viruses. Virology. 158:1987;465-468.
30. Nakajima K., Nobusawa E., Ogawa T., Nakajima S. Evolution of the NS genes of the influenza A viruses. I. The genetic relatedness of the NS genes of animal influenza viruses. Virus Genes. 4:1990;5-13.
31. Norton G.P., Tanaka T., Tobita K., Nakada S., Buonagurio D.A., Greenspan D., Krystal M., Palese P. Infectious influenza A and B virus variants with long carboxyl terminal deletions in the NS1 polypeptides. Virology. 156:1987;204-213.
32. Okazaki K., Kawaoka Y., Webster R.G. Evolutionary pathways of the PA genes of influenza A viruses. Virology. 172:1989;601-608.
33. Porter, A.G., Smith, J.C., Emtage, J.S., 1980, Nucleotide sequence of influenza virus RNA segment 8 indicates that coding regions for NS1 and NS2 proteins overlap. Proc. Natl. Acad. Sci. 77, 5074-5078.
34. Qian X.-Y., Alonso-Caplen F., Krug R.M. Two functional domains of the influenza virus NS1 protein are required for regulation of nuclear export of mRNA. J. Virol. 68:1994;2433-2441.
35. Qiu Y., Krug R.M. The influenza virus NS1 protein is a poly(A)-binding protein that inhibits nuclear export of mRNAs containing poly(A). J. Virol. 68:1994;2425-2432.
36. Reay P.A., Jones I.M., Gotch F.M., McMichael A.J., Brownlee G.G. Recognition of the PB1, neuraminidase, and matrix proteins of influenza virus A/NT/60/68 by cytotoxic T lymphocytes. Virology. 170:1989;477-485.
37. Richardson J.C., Akkina R.K. NS2 protein of influenza virus is found in purified virus and phosphorylated in infected cells. Arch. Virol. 116:1991;69-80.
38. Scholtissek C., Burger H., Bachmann P.A., Hannoun C. Genetic relatedness of hemagglutinins of the H1 subtype of influenza A viruses isolated from swine and birds. Virology. 129:1983;521-523.
39. Scholtissek C., Burger H., Kistner O., Shortridge K.F. The nucleoprotein as a possible major factor in determining host specificity of influenza H3N2 viruses. Virology. 147:1985;287-294.
40. Townsend A.R., Skehel J.J., Taylor P.M., Palese P. Recognition of influenza A virus nucleoprotein by an H-2-restricted cytotoxic T-cell clone. Virology. 65:1991;4248-4254.
41. Treanor J.J., Snyder M.H., London W.T., Murphy B.R. The B allele of the NS gene of avian influenza viruses, but not the A allele, attenuates a human influenza A virus for squirrel monkeys. Virology. 171:1989;1-9.
42. Webster R.G., Bean W.J., Gorman O.T., Chambers T.M., Kawaoka Y. Evolution and ecology of influenza A viruses. Microbiol. Rev. 56:1992;152-179.
43. Yasuda J., Nakada S., Kato A., Toyoda T., Ishihama A. Molecular assembly of influenza virus: association of the NS2 protein with virion matrix. Virology. 196:1993;249-255.