-
3
-
-
9244238208
-
Viral error catastrophe by mutagenic nucleosides
-
doi:10.1146/annurev.micro.58.030603. 123649
-
Anderson, J. P., Daifuku, R. & Loeb, L. A. 2004 Viral error catastrophe by mutagenic nucleosides. Annu. Rev. Microbiol. 58, 183-205. (doi:10.1146/annurev.micro.58.030603. 123649)
-
(2004)
Annu. Rev. Microbiol.
, vol.58
, pp. 183-205
-
-
Anderson, J.P.1
Daifuku, R.2
Loeb, L.A.3
-
4
-
-
26244436188
-
The effect of disease life history on the evolutionary emergence of novel pathogens
-
doi:10.1098/rspb.2005.3170
-
André, J.-B. & Day, T. 2005 The effect of disease life history on the evolutionary emergence of novel pathogens. Proc. R. Soc. B 272, 1949-1956. (doi:10.1098/rspb.2005.3170)
-
(2005)
Proc. R. Soc. B
, vol.272
, pp. 1949-1956
-
-
André, J.-B.1
Day, T.2
-
5
-
-
0347185345
-
The role of evolution in the emergence of infectious diseases
-
DOI 10.1038/nature02104
-
Antia, R., Regoes, R. R., Koella, J. C. & Bergstrom, C. T. 2003 The role of evolution in the emergence of infectious diseases. Nature 426, 658-661. (doi:10.1038/nature02104) (Pubitemid 38009372)
-
(2003)
Nature
, vol.426
, Issue.6967
, pp. 658-661
-
-
Antia, R.1
Regoes, R.R.2
Koella, J.C.3
Bergstrom, C.T.4
-
6
-
-
58549099698
-
Unpacking b: Within-host dynamics and the evolutionary ecology of pathogen transmission
-
doi:10.1146/annurev/ecolsys.37.091305.110119
-
Antolin, M. F. 2008 Unpacking b: within-host dynamics and the evolutionary ecology of pathogen transmission. Annu. Rev. Ecol. Evol. Syst. 39, 415-437. (doi:10.1146/annurev/ecolsys.37.091305.110119)
-
(2008)
Annu. Rev. Ecol. Evol. Syst.
, vol.39
, pp. 415-437
-
-
Antolin, M.F.1
-
8
-
-
0036846225
-
A general model for stochastic SIR epidemics with two levels of mixing
-
doi:10.1016/S0025-5564(02)00125-6
-
Ball, F. & Neal, P. 2002 A general model for stochastic SIR epidemics with two levels of mixing. Math. Biosci. 180, 73-102. (doi:10.1016/S0025- 5564(02)00125-6)
-
(2002)
Math. Biosci.
, vol.180
, pp. 73-102
-
-
Ball, F.1
Neal, P.2
-
9
-
-
42249102404
-
An introduction to networks in epidemic modeling
-
Mathematical epidemiology (eds F. Brauer, P. van den Driessche & J. Wu), Berlin, Germany: Springer-Verlag
-
Brauer, F. 2008 An introduction to networks in epidemic modeling. In Mathematical epidemiology (eds F. Brauer, P. van den Driessche & J. Wu), Lecture Notes in Mathematics, no. 1945, pp. 133-146. Berlin, Germany: Springer-Verlag.
-
(2008)
Lecture Notes in Mathematics
, Issue.1945
, pp. 133-146
-
-
Brauer, F.1
-
10
-
-
0032493181
-
Host spatial heterogeneity and extinction of an SIS epidemic
-
doi:10.1006/jtbi.1998.0663
-
Caraco, T., Duryea, M., Gardner, G., Maniatty, W. & Szymanski, B. K. 1998 Host spatial heterogeneity and extinction of an SIS epidemic. J. Theor. Biol. 192, 351-361. (doi:10.1006/jtbi.1998.0663)
-
(1998)
J. Theor. Biol.
, vol.192
, pp. 351-361
-
-
Caraco, T.1
Duryea, M.2
Gardner, G.3
Maniatty, W.4
Szymanski, B.K.5
-
11
-
-
0035968353
-
Diseases of humans and their domestic mammals: Pathogen characteristics, host range and the risk of emergence
-
doi:10.1098/rstb.2001.0889
-
Cleaveland, S., Laurenson, M. K. & Taylor, L. H. 2001 Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. Phil. Trans. R. Soc. Lond. B 356, 991-999. (doi:10.1098/rstb.2001.0889)
-
(2001)
Phil. Trans. R. Soc. Lond. B
, vol.356
, pp. 991-999
-
-
Cleaveland, S.1
Laurenson, M.K.2
Taylor, L.H.3
-
12
-
-
45249120169
-
Perspectives and opportunities for novel antiviral treatments targeting virus fitness
-
doi:10.1111/j.1469-0691.2007.01937.x
-
Clementi, M. 2008 Perspectives and opportunities for novel antiviral treatments targeting virus fitness. Clin. Microbiol. Infect. 14, 629-631. (doi:10.1111/j.1469-0691.2007.01937.x)
-
(2008)
Clin. Microbiol. Infect.
, vol.14
, pp. 629-631
-
-
Clementi, M.1
-
13
-
-
35348941195
-
Evaluating the importance of within- and between-host selection pressures on the evolution of chronic pathogens
-
doi:10.1016/j.tpb.2007.08.005
-
Coombs, D., Gilchrist, M. A. & Ball, C. L. 2007 Evaluating the importance of within- and between-host selection pressures on the evolution of chronic pathogens. Theor. Popul. Biol. 72, 576-591. (doi:10.1016/j.tpb.2007.08. 005)
-
(2007)
Theor. Popul. Biol.
, vol.72
, pp. 576-591
-
-
Coombs, D.1
Gilchrist, M.A.2
Ball, C.L.3
-
14
-
-
34247235763
-
The evolutionary emergence of pandemic influenza
-
doi:10.1098/rspb.2006.3638
-
Day, T., André, J.-B. & Park, A. 2006 The evolutionary emergence of pandemic influenza. Proc. R. Soc. B 273, 2945-2953. (doi:10.1098/rspb.2006.3638)
-
(2006)
Proc. R. Soc. B
, vol.273
, pp. 2945-2953
-
-
Day, T.1
André, J.-B.2
Park, A.3
-
15
-
-
70349327691
-
Bacteriophages as model organisms for virus emergence research
-
doi:10.1016/j.tim.2009.07.006
-
Dennehy, J. J. 2009 Bacteriophages as model organisms for virus emergence research. Trends Microbiol. 17, 450-457. (doi:10.1016/j.tim.2009.07.006)
-
(2009)
Trends Microbiol.
, vol.17
, pp. 450-457
-
-
Dennehy, J.J.1
-
16
-
-
0037108885
-
Error catastrophe and antiviral strategy
-
doi:10.1073/pnas.212514799
-
Eigen, M. 2002 Error catastrophe and antiviral strategy. Proc. Natl Acad. Sci. USA 99, 13 374-13 376. (doi:10.1073/pnas.212514799)
-
(2002)
Proc. Natl Acad. Sci. USA
, vol.99
, pp. 13374-13376
-
-
Eigen, M.1
-
17
-
-
31344431556
-
Evolution of virulence: Interdependence, constraints, and selection using nested models
-
doi:10.1016/j.tpb.2005.07.002
-
Gilchrist, M. A. & Coombs, D. 2006 Evolution of virulence: interdependence, constraints, and selection using nested models. Theor. Popul. Biol. 69, 145-153. (doi:10.1016/j.tpb.2005.07.002)
-
(2006)
Theor. Popul. Biol.
, vol.69
, pp. 145-153
-
-
Gilchrist, M.A.1
Coombs, D.2
-
18
-
-
67649961277
-
The pace of evolution across fitness valleys
-
doi:10.1016/j.jtbi.2009.04.011
-
Gokhale, C. S., Iwasa, Y., Nowak, M. A. & Traulsen, A. 2009 The pace of evolution across fitness valleys. J. Theor. Biol. 259, 613-620. (doi:10.1016/j.jtbi.2009.04.011)
-
(2009)
J. Theor. Biol.
, vol.259
, pp. 613-620
-
-
Gokhale, C.S.1
Iwasa, Y.2
Nowak, M.A.3
Traulsen, A.4
-
19
-
-
84925067620
-
-
Cambridge, UK: Cambridge University Press
-
Haccou, P., Jagers, P. & Vatutin, V. A. 2005 Branching processes: variation, growth, and extinction of populations. Cambridge, UK: Cambridge University Press.
-
(2005)
Branching Processes: Variation, Growth, and Extinction of Populations
-
-
Haccou, P.1
Jagers, P.2
Vatutin, V.A.3
-
20
-
-
33750447962
-
The role of compensatory mutations in the emergence of drug resistance
-
doi:10.1371/journal.pcbi.0020137
-
Handel, A., Regoes, R. R. & Antia, R. 2006 The role of compensatory mutations in the emergence of drug resistance. PLoS Comput. Biol. 2, 1262-1270. (doi:10.1371/journal.pcbi.0020137)
-
(2006)
PLoS Comput. Biol.
, vol.2
, pp. 1262-1270
-
-
Handel, A.1
Regoes, R.R.2
Antia, R.3
-
22
-
-
0345830674
-
Evolutionary dynamics of escape from biomedical intervention
-
doi:10.1098/rspb.2003.2539
-
Iwasa, Y., Michor, F. & Nowak, M. 2003 Evolutionary dynamics of escape from biomedical intervention. Proc. R. Soc. Lond. B 270, 2573-2578. (doi:10.1098/rspb.2003.2539)
-
(2003)
Proc. R. Soc. Lond. B
, vol.270
, pp. 2573-2578
-
-
Iwasa, Y.1
Michor, F.2
Nowak, M.3
-
23
-
-
0344552300
-
Evolutionary dynamics of invasion and escape
-
doi:10.1016/j.jtbi.2003.08.014
-
Iwasa, Y., Michor, F. & Nowak, M. 2004 Evolutionary dynamics of invasion and escape. J. Theor. Biol. 226, 205-214. (doi:10.1016/j.jtbi.2003.08. 014)
-
(2004)
J. Theor. Biol.
, vol.226
, pp. 205-214
-
-
Iwasa, Y.1
Michor, F.2
Nowak, M.3
-
24
-
-
33646893242
-
Networks and epidemic models
-
doi:10.1098/rsif.2005.0051
-
Keeling, M. J. & Eames, K. T. D. 2005 Networks and epidemic models. J. R. Soc. Interface 2, 295-307. (doi:10.1098/rsif.2005.0051)
-
(2005)
J. R. Soc. Interface
, vol.2
, pp. 295-307
-
-
Keeling, M.J.1
Eames, K.T.D.2
-
26
-
-
33645986456
-
Host species barriers to influenza virus infections
-
doi:10.1126/science.1122818
-
Kuiken, T., Holmes, E. C., McCauley, J., Rimmelzwaan, G. F., Williams, C. S. & Grenfell, B. T. 2006 Host species barriers to influenza virus infections. Science 312, 394-397. (doi:10.1126/science.1122818)
-
(2006)
Science
, vol.312
, pp. 394-397
-
-
Kuiken, T.1
Holmes, E.C.2
McCauley, J.3
Rimmelzwaan, G.F.4
Williams, C.S.5
Grenfell, B.T.6
-
27
-
-
27844455994
-
Superspreading and the effect of individual variation on disease emergence
-
doi:10.1038/nature04153
-
Lloyd-Smith, J. O., Schreiber, S. J., Kopp, P. E. & Getz, W. M. 2005 Superspreading and the effect of individual variation on disease emergence. Nature 438, 355-359. (doi:10.1038/nature04153)
-
(2005)
Nature
, vol.438
, pp. 355-359
-
-
Lloyd-Smith, J.O.1
Schreiber, S.J.2
Kopp, P.E.3
Getz, W.M.4
-
28
-
-
71549151317
-
Epidemic dynamics at the human-animal interface
-
doi:10.1126/science.1177345
-
Lloyd-Smith, J. O., George, D., Pepin, K. M., Pitzer, V. E., Pulliam, J. R. C., Dobson, A. P., Hudson, P. J. & Grenfell, B. T. 2009 Epidemic dynamics at the human-animal interface. Science 326, 1362-1367. (doi:10.1126/science. 1177345)
-
(2009)
Science
, vol.326
, pp. 1362-1367
-
-
Lloyd-Smith, J.O.1
George, D.2
Pepin, K.M.3
Pitzer, V.E.4
Pulliam, J.R.C.5
Dobson, A.P.6
Hudson, P.J.7
Grenfell, B.T.8
-
29
-
-
0035689341
-
Infection dynamics on scale-free networks
-
doi:10.1103/PhysRevE.64.066112
-
May, R. M. & Lloyd, A. L. 2001 Infection dynamics on scale-free networks. Phys. Rev. E 64, 066112. (doi:10.1103/PhysRevE.64.066112)
-
(2001)
Phys. Rev. E
, vol.64
, pp. 066112
-
-
May, R.M.1
Lloyd, A.L.2
-
30
-
-
6344287794
-
Network theory and SARS: Predicting outbreak diversity
-
doi:10.1016/j.jtbi.2004.07.026
-
Meyers, L. A., Pourbohloul, B., Newman, M. E. J., Skowronski, D. M. & Brunham, R. C. 2005 Network theory and SARS: predicting outbreak diversity. J. Theor. Biol. 232, 71-81. (doi:10.1016/j.jtbi.2004.07.026)
-
(2005)
J. Theor. Biol.
, vol.232
, pp. 71-81
-
-
Meyers, L.A.1
Pourbohloul, B.2
Newman, M.E.J.3
Skowronski, D.M.4
Brunham, R.C.5
-
31
-
-
49049118638
-
Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases
-
doi:10.1016/j.tree.2008.05.009
-
Mideo, N., Alizon, S. & Day, T. 2008 Linking within- and between-host dynamics in the evolutionary epidemiology of infectious diseases. Trends Ecol. Evol. 23, 511-517. (doi:10.1016/j.tree.2008.05.009)
-
(2008)
Trends Ecol. Evol.
, vol.23
, pp. 511-517
-
-
Mideo, N.1
Alizon, S.2
Day, T.3
-
32
-
-
34547378068
-
Epidemic size and probability in populations with heterogeneous infectivity and susceptibility
-
doi:10.1103/PhysRevE.76.010101
-
Miller, J. C. 2007 Epidemic size and probability in populations with heterogeneous infectivity and susceptibility. Phys. Rev. E 76, 010101 (doi:10.1103/PhysRevE.76.010101)
-
(2007)
Phys. Rev. E
, vol.76
, pp. 010101
-
-
Miller, J.C.1
-
33
-
-
69249147221
-
Spread of infectious disease through clustered populations
-
doi:10.1098/rsif.2008.0524
-
Miller, J. C. 2009 Spread of infectious disease through clustered populations. J. R. Soc. Interface 6, 1121-1134. (doi:10.1098/rsif.2008.0524)
-
(2009)
J. R. Soc. Interface
, vol.6
, pp. 1121-1134
-
-
Miller, J.C.1
-
34
-
-
0038895338
-
Multitype branching processes: Theory and applications
-
New York, NY: American Elsevier Publishing Company, Inc.
-
Mode, C. J. 1971 Multitype branching processes: theory and applications. Modern Analytic and Computational Methods in Science and Mathematics, no. 34. New York, NY: American Elsevier Publishing Company, Inc.
-
(1971)
Modern Analytic and Computational Methods in Science and Mathematics
, Issue.34
-
-
Mode, C.J.1
-
35
-
-
34848837297
-
Reservoir interactions and disease emergence
-
doi:10.1016/j.tpb.2007.07.001
-
Reluga, T., Meza, R., Walton, D. B. & Galvani, A. P. 2007 Reservoir interactions and disease emergence. Theor. Popul. Biol. 72, 400-408. (doi:10.1016/j.tpb.2007.07.001)
-
(2007)
Theor. Popul. Biol.
, vol.72
, pp. 400-408
-
-
Reluga, T.1
Meza, R.2
Walton, D.B.3
Galvani, A.P.4
-
36
-
-
67649641449
-
Multitype Bienaymé- Galton-Watson processes escaping extinction
-
doi:10.1239/aap/1240319583
-
Sagitov, S. & Serra, M. C. 2009 Multitype Bienaymé- Galton-Watson processes escaping extinction. Adv. Appl. Probab. 41, 225-246. (doi:10.1239/aap/1240319583)
-
(2009)
Adv. Appl. Probab.
, vol.41
, pp. 225-246
-
-
Sagitov, S.1
Serra, M.C.2
-
37
-
-
34249934108
-
Dynamics of escape mutants
-
doi:10.1016/j.tpb.2007.01.005
-
Serra, M. C. & Haccou, P. 2007 Dynamics of escape mutants. Theor. Popul. Biol. 72, 167-178. (doi:10.1016/j.tpb.2007.01.005)
-
(2007)
Theor. Popul. Biol.
, vol.72
, pp. 167-178
-
-
Serra, M.C.1
Haccou, P.2
-
38
-
-
0035968360
-
Risk factors for human disease emergence
-
doi:10.1098/rstb.2001.0888
-
Taylor, L. H., Latham, S. M. & Woolhouse, M. E. J. 2001 Risk factors for human disease emergence. Phil. Trans. R. Soc. Lond. B 356, 983-989. (doi:10.1098/rstb.2001.0888)
-
(2001)
Phil. Trans. R. Soc. Lond. B
, vol.356
, pp. 983-989
-
-
Taylor, L.H.1
Latham, S.M.2
Woolhouse, M.E.J.3
-
39
-
-
33846566796
-
On analytical approaches to epidemics on networks
-
doi:10.1016/ j.tpb.2006.11.002
-
Trapman, P. 2007 On analytical approaches to epidemics on networks. Theor. Popul. Biol. 71, 160-173. (doi:10.1016/ j.tpb.2006.11.002)
-
(2007)
Theor. Popul. Biol.
, vol.71
, pp. 160-173
-
-
Trapman, P.1
-
40
-
-
36348964753
-
Ecological origins of novel human pathogens
-
doi:10.1080/10408410701647560
-
Woolhouse, M. & Gaunt, E. 2007 Ecological origins of novel human pathogens. Crit. Rev. Microbiol. 33, 231-242. (doi:10.1080/10408410701647560)
-
(2007)
Crit. Rev. Microbiol.
, vol.33
, pp. 231-242
-
-
Woolhouse, M.1
Gaunt, E.2
-
41
-
-
17844365567
-
Emerging pathogens: The epidemiology and evolution of species jumps
-
doi:10.1016/j.tree.2005.02.009
-
Woolhouse, M. E. J., Haydon, D. T. & Antia, R. 2005 Emerging pathogens: the epidemiology and evolution of species jumps. Trends Ecol. Evol. 20, 238-244. (doi:10.1016/j.tree.2005.02.009)
-
(2005)
Trends Ecol. Evol.
, vol.20
, pp. 238-244
-
-
Woolhouse, M.E.J.1
Haydon, D.T.2
Antia, R.3
-
42
-
-
39049193274
-
How do pathogen evolution and host heterogeneity interact in disease emergence?
-
doi:10.1098/rspb.2006.3681
-
Yates, A., Antia, R. & Regoes, R. R. 2006 How do pathogen evolution and host heterogeneity interact in disease emergence? Proc. R. Soc. B 273, 3075-3083. (doi:10.1098/rspb.2006.3681)
-
(2006)
Proc. R. Soc. B
, vol.273
, pp. 3075-3083
-
-
Yates, A.1
Antia, R.2
Regoes, R.R.3
|