메뉴 건너뛰기




Volumn 48, Issue 2, 2016, Pages 195-200

Quantifying influenza virus diversity and transmission in humans

(18)  Poon, Leo L M a   Song, Timothy b,c   Rosenfeld, Roni d   Lin, Xudong e   Rogers, Matthew B b,j   Zhou, Bin c   Sebra, Robert f   Halpin, Rebecca A e   Guan, Yi a   Twaddle, Alan c   DePasse, Jay V g   Stockwell, Timothy B e   Wentworth, David E e,k   Holmes, Edward C h,i   Greenbaum, Benjamin f   Peiris, Joseph S M a   Cowling, Benjamin J a   Ghedin, Elodie c  


Author keywords

[No Author keywords available]

Indexed keywords

2009 H1N1 INFLUENZA; ANTIGENIC VARIATION; ARTICLE; CLINICAL ARTICLE; CONTROLLED STUDY; DONOR; EFFECTIVE POPULATION SIZE; GENETIC VARIABILITY; HOST; HOUSEHOLD; HUMAN; INFLUENZA A VIRUS; INFLUENZA A VIRUS (H3N2); INFLUENZA VIRUS; NONHUMAN; PRIORITY JOURNAL; QUANTITATIVE ANALYSIS; VIRUS TRANSMISSION; CLASSIFICATION; GENETIC VARIATION; GENETICS; INFLUENZA; PHYLOGENY; TRANSMISSION; VIROLOGY; VIRUS GENE;

EID: 84956621342     PISSN: 10614036     EISSN: 15461718     Source Type: Journal    
DOI: 10.1038/ng.3479     Document Type: Article
Times cited : (150)

References (26)
  • 1
    • 0032736987 scopus 로고    scopus 로고
    • Positive selection on the H3 hemagglutinin gene of human influenza virus A
    • Bush, R.M., Fitch, W.M., Bender, C.A., & Cox, N.J. Positive selection on the H3 hemagglutinin gene of human influenza virus A. Mol. Biol. Evol. 16, 1457-1465 (1999
    • (1999) Mol. Biol. Evol , vol.16 , pp. 1457-1465
    • Bush, R.M.1    Fitch, W.M.2    Bender, C.A.3    Cox, N.J.4
  • 2
    • 0027221640 scopus 로고
    • Rates of spontaneous mutation among RNA viruses
    • Drake, J.W. Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. USA 90, 4171-4175 (1993
    • (1993) Proc. Natl. Acad. Sci. USA , vol.90 , pp. 4171-4175
    • Drake, J.W.1
  • 4
    • 84940260736 scopus 로고    scopus 로고
    • Contrasting the epidemiological and evolutionary dynamics of influenza spatial transmission
    • Viboud, C., Nelson, M.I., Tan, Y., & Holmes, E.C. Contrasting the epidemiological and evolutionary dynamics of influenza spatial transmission. Phil. Trans. R. Soc. Lond. B 368, 20120199 (2013
    • (2013) Phil. Trans. R. Soc. Lond. B , vol.368 , pp. 20120199
    • Viboud, C.1    Nelson, M.I.2    Tan, Y.3    Holmes, E.C.4
  • 5
    • 84877774936 scopus 로고    scopus 로고
    • Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain
    • Fordyce S.L., et al. Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain. Virol. J. 10, 116 (2013
    • (2013) Virol. J , vol.10 , pp. 116
    • Fordyce, S.L.1
  • 6
    • 80052714037 scopus 로고    scopus 로고
    • Viral genetic sequence variations in pandemic H1N1/2009 and seasonal H3N2 influenza viruses within an individual a household and a community
    • Poon, L.L., et al. Viral genetic sequence variations in pandemic H1N1/2009 and seasonal H3N2 influenza viruses within an individual, a household and a community. J. Clin. Virol. 52, 146-150 (2011
    • (2011) J. Clin. Virol , vol.52 , pp. 146-150
    • Poon, L.L.1
  • 7
    • 77953517378 scopus 로고    scopus 로고
    • Comparative epidemiology of pandemic and seasonal influenza A in households
    • Cowling B.J., et al. Comparative epidemiology of pandemic and seasonal influenza A in households. N. Engl. J. Med. 362, 2175-2184 (2010
    • (2010) N. Engl. J. Med , vol.362 , pp. 2175-2184
    • Cowling, B.J.1
  • 8
    • 77951982821 scopus 로고    scopus 로고
    • Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic
    • Ghedin E., et al. Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic. J. Virol. 84, 5715-5718 (2010
    • (2010) J. Virol , vol.84 , pp. 5715-5718
    • Ghedin, E.1
  • 9
    • 77952500829 scopus 로고    scopus 로고
    • Co-infection with pandemic H1N1 and seasonal H3N2 influenza viruses
    • Lee, N., Chan, P.K., Lam, W.Y., Szeto, C.C., & Hui, D.S. Co-infection with pandemic H1N1 and seasonal H3N2 influenza viruses. Ann. Intern. Med. 152, 618-619 (2010
    • (2010) Ann. Intern. Med , vol.152 , pp. 618-619
    • Lee, N.1    Chan, P.K.2    Lam, W.Y.3    Szeto, C.C.4    Hui, D.S.5
  • 10
    • 78751650360 scopus 로고    scopus 로고
    • Reconstructing disease outbreaks from genetic data: A graph approach
    • Jombart, T., Eggo, R.M., Dodd, P.J., & Balloux, F. Reconstructing disease outbreaks from genetic data: a graph approach. Heredity (Edinb.) 106, 383-390 (2011
    • (2011) Heredity (Edinb.) , vol.106 , pp. 383-390
    • Jombart, T.1    Eggo, R.M.2    Dodd, P.J.3    Balloux, F.4
  • 11
    • 84872049120 scopus 로고    scopus 로고
    • Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks
    • Hughes J., et al. Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks. PLoS Pathog. 8, e1003081 (2012
    • (2012) PLoS Pathog , vol.8 , pp. e1003081
    • Hughes, J.1
  • 12
    • 84934931899 scopus 로고    scopus 로고
    • High-resolution genomic surveillance of 2014 ebolavirus using shared subclonal variants
    • 9 February
    • Emmett K.J., Lee, A., Khiabanian, H., & Rabadan, R. High-resolution genomic surveillance of 2014 ebolavirus using shared subclonal variants. PLoS Curr. http://dx.doi.org/10.1371/currents.outbreaks.c7fd7946ba606c982668a96bcba43c90 (9 February 2015
    • (2015) PLoS Curr
    • Emmett, K.J.1    Lee, A.2    Khiabanian, H.3    Rabadan, R.4
  • 13
    • 84944213433 scopus 로고    scopus 로고
    • Single-cell analysis of RNA virus infection identifies multiple genetically diverse viral genomes within single infectious units
    • Combe, M., Garijo, R., Geller, R., Cuevas, J.M., & Sanjuán, R. Single-cell analysis of RNA virus infection identifies multiple genetically diverse viral genomes within single infectious units. Cell Host Microbe 18, 424-432 (2015
    • (2015) Cell Host Microbe , vol.18 , pp. 424-432
    • Combe, M.1    Garijo, R.2    Geller, R.3    Cuevas, J.M.4    Sanjuán, R.5
  • 14
    • 84896709211 scopus 로고    scopus 로고
    • Genomewide analysis of reassortment and evolution of human influenza A(H3N2) viruses circulating between 1968 and 2011
    • Westgeest K.B., et al. Genomewide analysis of reassortment and evolution of human influenza A(H3N2) viruses circulating between 1968 and 2011. J. Virol. 88, 2844-2857 (2014
    • (2014) J. Virol , vol.88 , pp. 2844-2857
    • Westgeest, K.B.1
  • 15
    • 84910682671 scopus 로고    scopus 로고
    • Influenza A virus transmission bottlenecks are defined by infection route and recipient host
    • Varble A., et al. Influenza A virus transmission bottlenecks are defined by infection route and recipient host. Cell Host Microbe 16, 691-700 (2014
    • (2014) Cell Host Microbe , vol.16 , pp. 691-700
    • Varble, A.1
  • 16
    • 77951165843 scopus 로고    scopus 로고
    • Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus
    • Xu R., et al. Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus. Science 328, 357-360 (2010
    • (2010) Science , vol.328 , pp. 357-360
    • Xu, R.1
  • 17
    • 84864007897 scopus 로고    scopus 로고
    • Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011
    • Kitikoon P., et al. Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011. J. Virol. 86, 6804-6814 (2012
    • (2012) J. Virol , vol.86 , pp. 6804-6814
    • Kitikoon, P.1
  • 18
    • 84877791184 scopus 로고    scopus 로고
    • Antigenically intact hemagglutinin in circulating avian and swine influenza viruses and potential for H3N2 pandemic
    • Tharakaraman K., et al. Antigenically intact hemagglutinin in circulating avian and swine influenza viruses and potential for H3N2 pandemic. Sci. Rep. 3, 1822 (2013
    • (2013) Sci. Rep , vol.3 , pp. 1822
    • Tharakaraman, K.1
  • 19
    • 77958573987 scopus 로고    scopus 로고
    • Reassortant between human-like H3N2 and avian H5 subtype influenza A viruses in pigs: A potential public health risk
    • Cong Y., et al. Reassortant between human-like H3N2 and avian H5 subtype influenza A viruses in pigs: a potential public health risk. PLoS One 5, e12591 (2010
    • (2010) PLoS One , vol.5 , pp. e12591
    • Cong, Y.1
  • 20
    • 70349272201 scopus 로고    scopus 로고
    • Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses
    • Zhou B., et al. Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses. J. Virol. 83, 10309-10313 (2009
    • (2009) J. Virol , vol.83 , pp. 10309-10313
    • Zhou, B.1
  • 21
    • 39849084772 scopus 로고    scopus 로고
    • Viral genome sequencing by random priming methods
    • Djikeng A., et al. Viral genome sequencing by random priming methods. BMC Genomics 9, 5 (2008
    • (2008) BMC Genomics , vol.9 , pp. 5
    • Djikeng, A.1
  • 22
    • 50249100595 scopus 로고    scopus 로고
    • A rapid bootstrap algorithm for the RAxML Web servers
    • Stamatakis, A., Hoover, P., & Rougemont, J A rapid bootstrap algorithm for the RAxML Web servers. Syst. Biol. 57, 758-771 (2008
    • (2008) Syst. Biol , vol.57 , pp. 758-771
    • Stamatakis, A.1    Hoover, P.2    Rougemont, J.3
  • 23
    • 80052226692 scopus 로고    scopus 로고
    • Sequence-specific error profile of Illumina sequencers
    • Nakamura K., et al. Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res. 39, e90 (2011
    • (2011) Nucleic Acids Res , vol.39 , pp. e90
    • Nakamura, K.1
  • 24
    • 60349093708 scopus 로고    scopus 로고
    • Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation
    • Charlesworth, B. Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation. Nat. Rev. Genet. 10, 195-205 (2009
    • (2009) Nat. Rev. Genet , vol.10 , pp. 195-205
    • Charlesworth, B.1
  • 25
    • 84866266717 scopus 로고    scopus 로고
    • Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): Application and theory
    • Chaisson, M.J., & Tesler, G. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics 13, 238 (2012
    • (2012) BMC Bioinformatics , vol.13 , pp. 238
    • Chaisson, M.J.1    Tesler, G.2
  • 26
    • 68549104404 scopus 로고    scopus 로고
    • The sequence alignment/map format and samtools
    • Li H., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009
    • (2009) Bioinformatics , vol.25 , pp. 2078-2079
    • Li, H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.