-
1
-
-
0032736987
-
Positive selection on the H3 hemagglutinin gene of human influenza virus A
-
Bush, R.M., Fitch, W.M., Bender, C.A., & Cox, N.J. Positive selection on the H3 hemagglutinin gene of human influenza virus A. Mol. Biol. Evol. 16, 1457-1465 (1999
-
(1999)
Mol. Biol. Evol
, vol.16
, pp. 1457-1465
-
-
Bush, R.M.1
Fitch, W.M.2
Bender, C.A.3
Cox, N.J.4
-
2
-
-
0027221640
-
Rates of spontaneous mutation among RNA viruses
-
Drake, J.W. Rates of spontaneous mutation among RNA viruses. Proc. Natl. Acad. Sci. USA 90, 4171-4175 (1993
-
(1993)
Proc. Natl. Acad. Sci. USA
, vol.90
, pp. 4171-4175
-
-
Drake, J.W.1
-
4
-
-
84940260736
-
Contrasting the epidemiological and evolutionary dynamics of influenza spatial transmission
-
Viboud, C., Nelson, M.I., Tan, Y., & Holmes, E.C. Contrasting the epidemiological and evolutionary dynamics of influenza spatial transmission. Phil. Trans. R. Soc. Lond. B 368, 20120199 (2013
-
(2013)
Phil. Trans. R. Soc. Lond. B
, vol.368
, pp. 20120199
-
-
Viboud, C.1
Nelson, M.I.2
Tan, Y.3
Holmes, E.C.4
-
5
-
-
84877774936
-
Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain
-
Fordyce S.L., et al. Genetic diversity among pandemic 2009 influenza viruses isolated from a transmission chain. Virol. J. 10, 116 (2013
-
(2013)
Virol. J
, vol.10
, pp. 116
-
-
Fordyce, S.L.1
-
6
-
-
80052714037
-
Viral genetic sequence variations in pandemic H1N1/2009 and seasonal H3N2 influenza viruses within an individual a household and a community
-
Poon, L.L., et al. Viral genetic sequence variations in pandemic H1N1/2009 and seasonal H3N2 influenza viruses within an individual, a household and a community. J. Clin. Virol. 52, 146-150 (2011
-
(2011)
J. Clin. Virol
, vol.52
, pp. 146-150
-
-
Poon, L.L.1
-
7
-
-
77953517378
-
Comparative epidemiology of pandemic and seasonal influenza A in households
-
Cowling B.J., et al. Comparative epidemiology of pandemic and seasonal influenza A in households. N. Engl. J. Med. 362, 2175-2184 (2010
-
(2010)
N. Engl. J. Med
, vol.362
, pp. 2175-2184
-
-
Cowling, B.J.1
-
8
-
-
77951982821
-
Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic
-
Ghedin E., et al. Unseasonal transmission of H3N2 influenza A virus during the swine-origin H1N1 pandemic. J. Virol. 84, 5715-5718 (2010
-
(2010)
J. Virol
, vol.84
, pp. 5715-5718
-
-
Ghedin, E.1
-
9
-
-
77952500829
-
Co-infection with pandemic H1N1 and seasonal H3N2 influenza viruses
-
Lee, N., Chan, P.K., Lam, W.Y., Szeto, C.C., & Hui, D.S. Co-infection with pandemic H1N1 and seasonal H3N2 influenza viruses. Ann. Intern. Med. 152, 618-619 (2010
-
(2010)
Ann. Intern. Med
, vol.152
, pp. 618-619
-
-
Lee, N.1
Chan, P.K.2
Lam, W.Y.3
Szeto, C.C.4
Hui, D.S.5
-
10
-
-
78751650360
-
Reconstructing disease outbreaks from genetic data: A graph approach
-
Jombart, T., Eggo, R.M., Dodd, P.J., & Balloux, F. Reconstructing disease outbreaks from genetic data: a graph approach. Heredity (Edinb.) 106, 383-390 (2011
-
(2011)
Heredity (Edinb.)
, vol.106
, pp. 383-390
-
-
Jombart, T.1
Eggo, R.M.2
Dodd, P.J.3
Balloux, F.4
-
11
-
-
84872049120
-
Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks
-
Hughes J., et al. Transmission of equine influenza virus during an outbreak is characterized by frequent mixed infections and loose transmission bottlenecks. PLoS Pathog. 8, e1003081 (2012
-
(2012)
PLoS Pathog
, vol.8
, pp. e1003081
-
-
Hughes, J.1
-
12
-
-
84934931899
-
High-resolution genomic surveillance of 2014 ebolavirus using shared subclonal variants
-
9 February
-
Emmett K.J., Lee, A., Khiabanian, H., & Rabadan, R. High-resolution genomic surveillance of 2014 ebolavirus using shared subclonal variants. PLoS Curr. http://dx.doi.org/10.1371/currents.outbreaks.c7fd7946ba606c982668a96bcba43c90 (9 February 2015
-
(2015)
PLoS Curr
-
-
Emmett, K.J.1
Lee, A.2
Khiabanian, H.3
Rabadan, R.4
-
13
-
-
84944213433
-
Single-cell analysis of RNA virus infection identifies multiple genetically diverse viral genomes within single infectious units
-
Combe, M., Garijo, R., Geller, R., Cuevas, J.M., & Sanjuán, R. Single-cell analysis of RNA virus infection identifies multiple genetically diverse viral genomes within single infectious units. Cell Host Microbe 18, 424-432 (2015
-
(2015)
Cell Host Microbe
, vol.18
, pp. 424-432
-
-
Combe, M.1
Garijo, R.2
Geller, R.3
Cuevas, J.M.4
Sanjuán, R.5
-
14
-
-
84896709211
-
Genomewide analysis of reassortment and evolution of human influenza A(H3N2) viruses circulating between 1968 and 2011
-
Westgeest K.B., et al. Genomewide analysis of reassortment and evolution of human influenza A(H3N2) viruses circulating between 1968 and 2011. J. Virol. 88, 2844-2857 (2014
-
(2014)
J. Virol
, vol.88
, pp. 2844-2857
-
-
Westgeest, K.B.1
-
15
-
-
84910682671
-
Influenza A virus transmission bottlenecks are defined by infection route and recipient host
-
Varble A., et al. Influenza A virus transmission bottlenecks are defined by infection route and recipient host. Cell Host Microbe 16, 691-700 (2014
-
(2014)
Cell Host Microbe
, vol.16
, pp. 691-700
-
-
Varble, A.1
-
16
-
-
77951165843
-
Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus
-
Xu R., et al. Structural basis of preexisting immunity to the 2009 H1N1 pandemic influenza virus. Science 328, 357-360 (2010
-
(2010)
Science
, vol.328
, pp. 357-360
-
-
Xu, R.1
-
17
-
-
84864007897
-
Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011
-
Kitikoon P., et al. Pathogenicity and transmission in pigs of the novel A(H3N2)v influenza virus isolated from humans and characterization of swine H3N2 viruses isolated in 2010-2011. J. Virol. 86, 6804-6814 (2012
-
(2012)
J. Virol
, vol.86
, pp. 6804-6814
-
-
Kitikoon, P.1
-
18
-
-
84877791184
-
Antigenically intact hemagglutinin in circulating avian and swine influenza viruses and potential for H3N2 pandemic
-
Tharakaraman K., et al. Antigenically intact hemagglutinin in circulating avian and swine influenza viruses and potential for H3N2 pandemic. Sci. Rep. 3, 1822 (2013
-
(2013)
Sci. Rep
, vol.3
, pp. 1822
-
-
Tharakaraman, K.1
-
19
-
-
77958573987
-
Reassortant between human-like H3N2 and avian H5 subtype influenza A viruses in pigs: A potential public health risk
-
Cong Y., et al. Reassortant between human-like H3N2 and avian H5 subtype influenza A viruses in pigs: a potential public health risk. PLoS One 5, e12591 (2010
-
(2010)
PLoS One
, vol.5
, pp. e12591
-
-
Cong, Y.1
-
20
-
-
70349272201
-
Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses
-
Zhou B., et al. Single-reaction genomic amplification accelerates sequencing and vaccine production for classical and Swine origin human influenza a viruses. J. Virol. 83, 10309-10313 (2009
-
(2009)
J. Virol
, vol.83
, pp. 10309-10313
-
-
Zhou, B.1
-
21
-
-
39849084772
-
Viral genome sequencing by random priming methods
-
Djikeng A., et al. Viral genome sequencing by random priming methods. BMC Genomics 9, 5 (2008
-
(2008)
BMC Genomics
, vol.9
, pp. 5
-
-
Djikeng, A.1
-
22
-
-
50249100595
-
A rapid bootstrap algorithm for the RAxML Web servers
-
Stamatakis, A., Hoover, P., & Rougemont, J A rapid bootstrap algorithm for the RAxML Web servers. Syst. Biol. 57, 758-771 (2008
-
(2008)
Syst. Biol
, vol.57
, pp. 758-771
-
-
Stamatakis, A.1
Hoover, P.2
Rougemont, J.3
-
23
-
-
80052226692
-
Sequence-specific error profile of Illumina sequencers
-
Nakamura K., et al. Sequence-specific error profile of Illumina sequencers. Nucleic Acids Res. 39, e90 (2011
-
(2011)
Nucleic Acids Res
, vol.39
, pp. e90
-
-
Nakamura, K.1
-
24
-
-
60349093708
-
Fundamental concepts in genetics: Effective population size and patterns of molecular evolution and variation
-
Charlesworth, B. Fundamental concepts in genetics: effective population size and patterns of molecular evolution and variation. Nat. Rev. Genet. 10, 195-205 (2009
-
(2009)
Nat. Rev. Genet
, vol.10
, pp. 195-205
-
-
Charlesworth, B.1
-
25
-
-
84866266717
-
Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): Application and theory
-
Chaisson, M.J., & Tesler, G. Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory. BMC Bioinformatics 13, 238 (2012
-
(2012)
BMC Bioinformatics
, vol.13
, pp. 238
-
-
Chaisson, M.J.1
Tesler, G.2
-
26
-
-
68549104404
-
The sequence alignment/map format and samtools
-
Li H., et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
|