-
1
-
-
31444451661
-
Interferon regulatory factor-1 is prerequisite to the constitutive expression and IFN-gamma-induced upregulation of B7-H1 (CD274
-
S. J. Lee et al., Interferon regulatory factor-1 is prerequisite to the constitutive expression and IFN-gamma-induced upregulation of B7-H1 (CD274). FEBS Lett. 580, 755-762 (2006). Doi: 10.1016/j.febslet.2005.12.093; pmid: 16413538
-
(2006)
FEBS Lett
, vol.580
, pp. 755-762
-
-
Lee, S.J.1
-
2
-
-
85007499773
-
The expression profiles and regulation of PD-L1 in tumor-induced myeloid-derived suppressor cells
-
C. Lu, P. S. Redd, J. R. Lee, N. Savage, K. Liu, The expression profiles and regulation of PD-L1 in tumor-induced myeloid-derived suppressor cells. Oncoimmunology 5, e1247135 (2016). Doi: 10.1080/2162402X.2016.1247135; pmid: 28123883
-
(2016)
Oncoimmunology
, vol.5
, pp. e1247135
-
-
Lu, C.1
Redd, P.S.2
Lee, J.R.3
Savage, N.4
Liu, K.5
-
3
-
-
84904024273
-
Association of PD-1, PD-1 ligands, and other features of the tumor immune microenvironment with response to anti-PD-1 therapy
-
J. M. Taube et al., Association of PD-1, PD-1 ligands, and other features of the tumor immune microenvironment with response to anti-PD-1 therapy. Clin. Cancer Res. 20, 5064-5074 (2014). Doi: 10.1158/1078-0432.CCR-13-3271; pmid: 24714771
-
(2014)
Clin. Cancer Res
, vol.20
, pp. 5064-5074
-
-
Taube, J.M.1
-
4
-
-
84918828514
-
Genetic basis for clinical response to CTLA-4 blockade in melanoma
-
A. Snyder et al., Genetic basis for clinical response to CTLA-4 blockade in melanoma. N. Engl. J. Med. 371, 2189-2199 (2014). Doi: 10.1056/NEJMoa1406498; pmid: 25409260
-
(2014)
N. Engl. J. Med
, vol.371
, pp. 2189-2199
-
-
Snyder, A.1
-
5
-
-
84943516465
-
Genomic correlates of response to CTLA-4 blockade in metastatic melanoma
-
E. M. Van Allen et al., Genomic correlates of response to CTLA-4 blockade in metastatic melanoma. Science 350, 207-211 (2015). Doi: 10.1126/science.aad0095; pmid: 26359337
-
(2015)
Science
, vol.350
, pp. 207-211
-
-
Van Allen, E.M.1
-
6
-
-
84961221351
-
Genomic and transcriptomic features of response to anti-PD-1 therapy in metastatic melanoma
-
W. Hugo et al., Genomic and transcriptomic features of response to anti-PD-1 therapy in metastatic melanoma. Cell 165, 35-44 (2016). Doi: 10.1016/j.cell.2016.02.065; pmid: 26997480
-
(2016)
Cell
, vol.165
, pp. 35-44
-
-
Hugo, W.1
-
7
-
-
84975221154
-
Emerging targeted therapies for melanoma
-
D. B. Johnson, M. H. Pollack, J. A. Sosman, Emerging targeted therapies for melanoma. Expert Opin. Emerg. Drugs 21, 195-207 (2016). Doi: 10.1080/14728214.2016.1184644; pmid: 27148822
-
(2016)
Expert Opin. Emerg. Drugs
, vol.21
, pp. 195-207
-
-
Johnson, D.B.1
Pollack, M.H.2
Sosman, J.A.3
-
8
-
-
84928761118
-
Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer
-
N. A. Rizvi et al., Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer. Science 348, 124-128 (2015). Doi: 10.1126/science.aaa1348; pmid: 25765070
-
(2015)
Science
, vol.348
, pp. 124-128
-
-
Rizvi, N.A.1
-
9
-
-
85014030093
-
Tumor mutation load assessed by FoundationOne (FM1) is associated with improved efficacy of atezolizumab (atezo) in patients with advanced NSCLC
-
M. Kowanetz et al., Tumor mutation load assessed by FoundationOne (FM1) is associated with improved efficacy of atezolizumab (atezo) in patients with advanced NSCLC. Ann. Oncol. 27, 77P (2016). Doi: 10.1093/annonc/mdw363.25
-
(2016)
Ann. Oncol
, vol.27
, pp. 77P
-
-
Kowanetz, M.1
-
10
-
-
85026265866
-
Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade
-
D. T. Le et al., Mismatch repair deficiency predicts response of solid tumors to PD-1 blockade. Science 357, 409-413 (2017). Doi: 10.1126/science.aan6733; pmid: 28596308
-
(2017)
Science
, vol.357
, pp. 409-413
-
-
Le, D.T.1
-
11
-
-
84932628341
-
PD-1 blockade in tumors with mismatch-repair deficiency
-
D. T. Le et al., PD-1 blockade in tumors with mismatch-repair deficiency. N. Engl. J. Med. 372, 2509-2520 (2015). Doi: 10.1056/NEJMoa1500596; pmid: 26028255
-
(2015)
N. Engl. J. Med
, vol.372
, pp. 2509-2520
-
-
Le, D.T.1
-
12
-
-
84959577118
-
Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: A single-arm, multicentre, phase 2 trial
-
J. E. Rosenberg et al., Atezolizumab in patients with locally advanced and metastatic urothelial carcinoma who have progressed following treatment with platinum-based chemotherapy: A single-arm, multicentre, phase 2 trial. Lancet 387, 1909-1920 (2016). Doi: 10.1016/S0140-6736(16)00561-4; pmid: 26952546
-
(2016)
Lancet
, vol.387
, pp. 1909-1920
-
-
Rosenberg, J.E.1
-
13
-
-
84920962202
-
Molecular and genetic properties of tumors associated with local immune cytolytic activity
-
M. S. Rooney, S. A. Shukla, C. J. Wu, G. Getz, N. Hacohen, Molecular and genetic properties of tumors associated with local immune cytolytic activity. Cell 160, 48-61 (2015). Doi: 10.1016/j.cell.2014.12.033; pmid: 25594174
-
(2015)
Cell
, vol.160
, pp. 48-61
-
-
Rooney, M.S.1
Shukla, S.A.2
Wu, C.J.3
Getz, G.4
Hacohen, N.5
-
14
-
-
84920956732
-
PD-1 blockade induces responses by inhibiting adaptive immune resistance
-
P. C. Tumeh et al., PD-1 blockade induces responses by inhibiting adaptive immune resistance. Nature 515, 568-571 (2014). Doi: 10.1038/nature13954; pmid: 25428505
-
(2014)
Nature
, vol.515
, pp. 568-571
-
-
Tumeh, P.C.1
-
15
-
-
85026675148
-
IFN-g-related mRNA profile predicts clinical response to PD-1 blockade
-
M. Ayers et al., IFN-g-related mRNA profile predicts clinical response to PD-1 blockade. J. Clin. Invest. 127, 2930-2940 (2017). Doi: 10.1172/JCI91190; pmid: 28650338
-
(2017)
J. Clin. Invest
, vol.127
, pp. 2930-2940
-
-
Ayers, M.1
-
16
-
-
85054775060
-
-
The Cancer Genome Atlas, TCGA Data Portal
-
The Cancer Genome Atlas, TCGA Data Portal; https://tcga-data.nci.nih.gov/docs/publications/tcga/.
-
-
-
-
17
-
-
84891102589
-
Mutational signatures: The patterns of somatic mutations hidden in cancer genomes
-
L. B. Alexandrov, M. R. Stratton, Mutational signatures: The patterns of somatic mutations hidden in cancer genomes. Curr. Opin. Genet. Dev. 24, 52-60 (2014). Doi: 10.1016/j.gde.2013.11.014; pmid: 24657537
-
(2014)
Curr. Opin. Genet. Dev
, vol.24
, pp. 52-60
-
-
Alexandrov, L.B.1
Stratton, M.R.2
-
18
-
-
85034626501
-
Genomic determinants of response to pembrolizumab in head and neck squamous cell carcinoma
-
R. Haddad et al., Genomic determinants of response to pembrolizumab in head and neck squamous cell carcinoma. J. Clin. Oncol. 35 (Suppl.), 6009 (2017). Doi: 10.1200/JCO.2017.35.15-suppl.6009
-
(2017)
J. Clin. Oncol
, vol.35
, pp. 6009
-
-
Haddad, R.1
-
19
-
-
85016150420
-
Targeted next generation sequencing identifies markers of response to PD-1 blockade
-
D. B. Johnson et al., Targeted next generation sequencing identifies markers of response to PD-1 blockade. Cancer Immunol. Res. 4, 959-967 (2016). Doi: 10.1158/2326-6066. CIR-16-0143; pmid: 27671167
-
(2016)
Cancer Immunol. Res
, vol.4
, pp. 959-967
-
-
Johnson, D.B.1
-
20
-
-
85050195420
-
Identifying a clinically applicable mutational burden threshold as a potential biomarker of response to immune checkpoint therapy in solid tumors
-
pmid: 29951597
-
A. Panda et al., Identifying a clinically applicable mutational burden threshold as a potential biomarker of response to immune checkpoint therapy in solid tumors. JCO Precis. Oncol. 2017, 10.1200/PO.17.00146 (2017). Pmid: 29951597
-
(2017)
JCO Precis. Oncol
-
-
Panda, A.1
-
21
-
-
85054775985
-
Biomarkers predictive of response to pembrolizumab in head and neck cancer (HNSCC
-
Chicago, IL, 14 to 18 April 2018 American Association for Cancer Research, 2018 abstract no. LB-339
-
T. Y. Seiwert et al., "Biomarkers predictive of response to pembrolizumab in head and neck cancer (HNSCC), " in Proceedings of the American Association for Cancer Research Annual Meeting 2018, Chicago, IL, 14 to 18 April 2018 (American Association for Cancer Research, 2018), abstract no. LB-339.
-
Proceedings of the American Association for Cancer Research Annual Meeting 2018
-
-
Seiwert, T.Y.1
-
22
-
-
84906841915
-
Microsatellite instability detection by next generation sequencing
-
S. J. Salipante, S. M. Scroggins, H. L. Hampel, E. H. Turner, C. C. Pritchard, Microsatellite instability detection by next generation sequencing. Clin. Chem. 60, 1192-1199 (2014). Doi: 10.1373/clinchem.2014.223677; pmid: 24987110
-
(2014)
Clin. Chem
, vol.60
, pp. 1192-1199
-
-
Salipante, S.J.1
Scroggins, S.M.2
Hampel, H.L.3
Turner, E.H.4
Pritchard, C.C.5
-
23
-
-
85014681380
-
Integrated molecular analysis of tumor biopsies on sequential CTLA-4 and PD-1 blockade reveals markers of response and resistance
-
W. Roh et al., Integrated molecular analysis of tumor biopsies on sequential CTLA-4 and PD-1 blockade reveals markers of response and resistance. Sci. Transl. Med. 9, eaah3560 (2017). Doi: 10.1126/scitranslmed.aah3560; pmid: 28251903
-
(2017)
Sci. Transl. Med
, vol.9
, pp. eaah3560
-
-
Roh, W.1
-
24
-
-
84962301577
-
Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade
-
N. McGranahan et al., Clonal neoantigens elicit T cell immunoreactivity and sensitivity to immune checkpoint blockade. Science 351, 1463-1469 (2016). Doi: 10.1126/science.aaf1490; pmid: 26940869
-
(2016)
Science
, vol.351
, pp. 1463-1469
-
-
McGranahan, N.1
-
25
-
-
84929481480
-
Pembrolizumab for the treatment of non-small-cell lung cancer
-
E. B. Garon et al., Pembrolizumab for the treatment of non-small-cell lung cancer. N. Engl. J. Med. 372, 2018-2028 (2015). Doi: 10.1056/NEJMoa1501824; pmid: 25891174
-
(2015)
N. Engl. J. Med
, vol.372
, pp. 2018-2028
-
-
Garon, E.B.1
-
26
-
-
84929481481
-
Pembrolizumab versus ipilimumab in advanced melanoma
-
C. Robert et al., Pembrolizumab versus ipilimumab in advanced melanoma. N. Engl. J. Med. 372, 2521-2532 (2015). Doi: 10.1056/NEJMoa1503093; pmid: 25891173
-
(2015)
N. Engl. J. Med
, vol.372
, pp. 2521-2532
-
-
Robert, C.1
-
27
-
-
84944058669
-
An update on the role of immunotherapy and vaccine strategies for primary brain tumors
-
M. R. Neagu, D. A. Reardon, An update on the role of immunotherapy and vaccine strategies for primary brain tumors. Curr. Treat. Options Oncol. 16, 54 (2015). Doi: 10.1007/s11864-015-0371-3; pmid: 26454859
-
(2015)
Curr. Treat. Options Oncol
, vol.16
, pp. 54
-
-
Neagu, M.R.1
Reardon, D.A.2
-
28
-
-
84899489860
-
Therapeutic options and multifaceted treatment paradigms in metastatic castrate-resistant prostate cancer
-
U. Vaishampayan, Therapeutic options and multifaceted treatment paradigms in metastatic castrate-resistant prostate cancer. Curr. Opin. Oncol. 26, 265-273 (2014). Doi: 10.1097/CCO.0000000000000066; pmid: 24626129
-
(2014)
Curr. Opin. Oncol
, vol.26
, pp. 265-273
-
-
Vaishampayan, U.1
-
29
-
-
80052512017
-
Unique ectopic lymph node-like structures present in human primary colorectal carcinoma are identified by immune gene array profiling
-
D. Coppola et al., Unique ectopic lymph node-like structures present in human primary colorectal carcinoma are identified by immune gene array profiling. Am. J. Pathol. 179, 37-45 (2011). Doi: 10.1016/j.ajpath.2011.03.007; pmid: 21703392
-
(2011)
Am. J. Pathol
, vol.179
, pp. 37-45
-
-
Coppola, D.1
-
30
-
-
84880704621
-
The continuum of cancer immunosurveillance: Prognostic, predictive, and mechanistic signatures
-
J. Galon, H. K. Angell, D. Bedognetti, F. M. Marincola, The continuum of cancer immunosurveillance: Prognostic, predictive, and mechanistic signatures. Immunity 39, 11-26 (2013). Doi: 10.1016/j.immuni.2013.07.008; pmid: 23890060
-
(2013)
Immunity
, vol.39
, pp. 11-26
-
-
Galon, J.1
Angell, H.K.2
Bedognetti, D.3
Marincola, F.M.4
-
31
-
-
85034865728
-
A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy
-
pmid: 29132144
-
M. Luksza et al., A neoantigen fitness model predicts tumour response to checkpoint blockade immunotherapy. Nature 551, 517-520 (2017). Pmid: 29132144
-
(2017)
Nature
, vol.551
, pp. 517-520
-
-
Luksza, M.1
-
32
-
-
20144374709
-
A cell proliferation signature is a marker of extremely poor outcome in a subpopulation of breast cancer patients
-
pmid: 15899795
-
H. Dai et al., A cell proliferation signature is a marker of extremely poor outcome in a subpopulation of breast cancer patients. Cancer Res. 65, 4059-4066 (2005). Doi: 10.1158/0008-5472.CAN-04-3953; pmid: 15899795
-
(2005)
Cancer Res
, vol.65
, pp. 4059-4066
-
-
Dai, H.1
-
33
-
-
84936953099
-
Melanoma-intrinsic b-catenin signalling prevents anti-tumour immunity
-
S. Spranger, R. Bao, T. F. Gajewski, Melanoma-intrinsic b-catenin signalling prevents anti-tumour immunity. Nature 523, 231-235 (2015). Doi: 10.1038/nature14404; pmid: 25970248
-
(2015)
Nature
, vol.523
, pp. 231-235
-
-
Spranger, S.1
Bao, R.2
Gajewski, T.F.3
-
34
-
-
84885673911
-
Inferring tumour purity and stromal and immune cell admixture from expression data
-
K. Yoshihara et al., Inferring tumour purity and stromal and immune cell admixture from expression data. Nat. Commun. 4, 2612 (2013). Doi: 10.1038/ncomms3612; pmid: 24113773
-
(2013)
Nat. Commun
, vol.4
, pp. 2612
-
-
Yoshihara, K.1
-
35
-
-
85017451727
-
T-cell invigoration to tumour burden ratio associated with anti-PD-1 response
-
A. C. Huang et al., T-cell invigoration to tumour burden ratio associated with anti-PD-1 response. Nature 545, 60-65 (2017). Doi: 10.1038/nature22079; pmid: 28397821
-
(2017)
Nature
, vol.545
, pp. 60-65
-
-
Huang, A.C.1
-
36
-
-
84880276438
-
Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumorreactive
-
P. F. Robbins et al., Mining exomic sequencing data to identify mutated antigens recognized by adoptively transferred tumorreactive T cells. Nat. Med. 19, 747-752 (2013). Doi: 10.1038/nm.3161; pmid: 23644516
-
(2013)
T Cells. Nat. Med
, vol.19
, pp. 747-752
-
-
Robbins, P.F.1
-
37
-
-
38849151665
-
Epitope landscape in breast and colorectal cancer
-
pmid: 18245491
-
N. H. Segal et al., Epitope landscape in breast and colorectal cancer. Cancer Res. 68, 889-892 (2008). Doi: 10.1158/0008-5472.CAN-07-3095; pmid: 18245491
-
(2008)
Cancer Res
, vol.68
, pp. 889-892
-
-
Segal, N.H.1
-
38
-
-
84862776855
-
Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting
-
pmid: 22318521
-
H. Matsushita et al., Cancer exome analysis reveals a T-cell-dependent mechanism of cancer immunoediting. Nature 482, 400-404 (2012). Doi: 10.1038/nature10755; pmid: 22318521
-
(2012)
Nature
, vol.482
, pp. 400-404
-
-
Matsushita, H.1
-
39
-
-
84992573817
-
Development of a companion diagnostic for pembrolizumab in non-small cell lung cancer using immunohistochemistry for programmed death ligand-1
-
pmid: 27552095
-
M. Dolled-Filhart et al., Development of a companion diagnostic for pembrolizumab in non-small cell lung cancer using immunohistochemistry for programmed death ligand-1. Arch. Pathol. Lab. Med. 140, 1243-1249 (2016). Doi: 10.5858/arpa.2015-0542-OA; pmid: 27552095
-
(2016)
Arch. Pathol. Lab. Med
, vol.140
, pp. 1243-1249
-
-
Dolled-Filhart, M.1
-
40
-
-
84920993558
-
A phase Ib study of pembrolizumab (pembro; MK-3475) in patients (pts) with human papillomavirus virus (HPV)-positive and negative head and neck cancer (HNC
-
L. Q. Chow et al., A phase Ib study of pembrolizumab (pembro; MK-3475) in patients (pts) with human papillomavirus virus (HPV)-positive and negative head and neck cancer (HNC). Ann. Oncol. 25 (Suppl. 4), 14 (2014). Doi: 10.1093/annonc/mdu438.32
-
(2014)
Ann. Oncol
, vol.25
, pp. 14
-
-
Chow, L.Q.1
-
41
-
-
84969988424
-
Safety and clinical activity of pembrolizumab for treatment of recurrent or metastatic squamous cell carcinoma of the head and neck (KEYNOTE-012): An open-label, multicentre, phase 1b trial
-
pmid: 27247226
-
T. Y. Seiwert et al., Safety and clinical activity of pembrolizumab for treatment of recurrent or metastatic squamous cell carcinoma of the head and neck (KEYNOTE-012): An open-label, multicentre, phase 1b trial. Lancet Oncol. 17, 956-965 (2016). Doi: 10.1016/S1470-2045(16)30066-3; pmid: 27247226
-
(2016)
Lancet Oncol
, vol.17
, pp. 956-965
-
-
Seiwert, T.Y.1
-
42
-
-
84879759020
-
Safety and tumor responses with lambrolizumab (anti-PD-1) in melanoma
-
pmid: 23724846
-
O. Hamid et al., Safety and tumor responses with lambrolizumab (anti-PD-1) in melanoma. N. Engl. J. Med. 369, 134-144 (2013). Doi: 10.1056/NEJMoa1305133; pmid: 23724846
-
(2013)
N. Engl. J. Med
, vol.369
, pp. 134-144
-
-
Hamid, O.1
-
43
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
H. Li, R. Durbin, Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760 (2009). Doi: 10.1093/bioinformatics/btp324; pmid: 19451168
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
44
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
A. McKenna et al., The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010). Doi: 10.1101/gr.107524.110; pmid: 20644199
-
(2010)
Genome Res
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
45
-
-
84874025843
-
Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples
-
pmid: 23396013
-
K. Cibulskis et al., Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples. Nat. Biotechnol. 31, 213-219 (2013). Doi: 10.1038/nbt.2514; pmid: 23396013
-
(2013)
Nat. Biotechnol
, vol.31
, pp. 213-219
-
-
Cibulskis, K.1
-
46
-
-
0032876978
-
DbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation
-
pmid: 10447503
-
S. T. Sherry, M. Ward, K. Sirotkin, dbSNP-database for single nucleotide polymorphisms and other classes of minor genetic variation. Genome Res. 9, 677-679 (1999). Pmid: 10447503
-
(1999)
Genome Res
, vol.9
, pp. 677-679
-
-
Sherry, S.T.1
Ward, M.2
Sirotkin, K.3
-
47
-
-
75549087826
-
COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer
-
S. A. Forbes et al., COSMIC (the Catalogue of Somatic Mutations in Cancer): A resource to investigate acquired mutations in human cancer. Nucleic Acids Res. 38, D652-D657 (2010). Doi: 10.1093/nar/gkp995; pmid: 19906727
-
(2010)
Nucleic Acids Res
, vol.38
, pp. D652-D657
-
-
Forbes, S.A.1
-
48
-
-
84925550130
-
OptiType: Precision HLA typing from nextgeneration sequencing data
-
pmid: 25143287
-
A. Szolek et al., OptiType: Precision HLA typing from nextgeneration sequencing data. Bioinformatics 30, 3310-3316 (2014). Doi: 10.1093/bioinformatics/btu548; pmid: 25143287
-
(2014)
Bioinformatics
, vol.30
, pp. 3310-3316
-
-
Szolek, A.1
-
49
-
-
0037407113
-
Reliable prediction of T-cell epitopes using neural networks with novel sequence representations
-
M. Nielsen et al., Reliable prediction of T-cell epitopes using neural networks with novel sequence representations. Protein Sci. 12, 1007-1017 (2003). Doi: 10.1110/ps.0239403; pmid: 12717023
-
(2003)
Protein Sci
, vol.12
, pp. 1007-1017
-
-
Nielsen, M.1
-
50
-
-
2342561929
-
Definition of supertypes for HLA molecules using clustering of specificity matrices
-
pmid: 14963618
-
O. Lund et al., Definition of supertypes for HLA molecules using clustering of specificity matrices. Immunogenetics 55, 797-810 (2004). Doi: 10.1007/s00251-004-0647-4; pmid: 14963618
-
(2004)
Immunogenetics
, vol.55
, pp. 797-810
-
-
Lund, O.1
-
51
-
-
39649122106
-
HLA class i supertypes: A revised and updated classification
-
J. Sidney, B. Peters, N. Frahm, C. Brander, A. Sette, HLA class I supertypes: A revised and updated classification. BMC Immunol. 9, 1 (2008). Doi: 10.1186/1471-2172-9-1; pmid: 18211710
-
(2008)
BMC Immunol
, vol.9
, pp. 1
-
-
Sidney, J.1
Peters, B.2
Frahm, N.3
Brander, C.4
Sette, A.5
-
52
-
-
84973338712
-
The Ensembl Variant Effect Predictor
-
pmid: 27268795
-
W. McLaren et al., The Ensembl Variant Effect Predictor. Genome Biol. 17, 122 (2016). Doi: 10.1186/s13059-016-0974-4; pmid: 27268795
-
(2016)
Genome Biol
, vol.17
, pp. 122
-
-
McLaren, W.1
-
53
-
-
84959467752
-
DeconstructSigs: Delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution
-
pmid: 26899170
-
R. Rosenthal, N. McGranahan, J. Herrero, B. S. Taylor, C. Swanton, DeconstructSigs: Delineating mutational processes in single tumors distinguishes DNA repair deficiencies and patterns of carcinoma evolution. Genome Biol. 17, 31 (2016). Doi: 10.1186/s13059-016-0893-4; pmid: 26899170
-
(2016)
Genome Biol
, vol.17
, pp. 31
-
-
Rosenthal, R.1
McGranahan, N.2
Herrero, J.3
Taylor, B.S.4
Swanton, C.5
-
54
-
-
84882837534
-
Signatures of mutational processes in human cancer
-
pmid: 23945592
-
L. B. Alexandrov et al., Signatures of mutational processes in human cancer. Nature 500, 415-421 (2013). Doi: 10.1038/nature12477; pmid: 23945592
-
(2013)
Nature
, vol.500
, pp. 415-421
-
-
Alexandrov, L.B.1
-
55
-
-
84863229597
-
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
pmid: 22300766
-
D. C. Koboldt et al., VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res. 22, 568-576 (2012). Doi: 10.1101/gr.129684.111; pmid: 22300766
-
(2012)
Genome Res
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
-
56
-
-
84922572688
-
Sequenza: Allele-specific copy number and mutation profiles from tumor sequencing data
-
F. Favero et al., Sequenza: Allele-specific copy number and mutation profiles from tumor sequencing data. Ann. Oncol. 26, 64-70 (2015). Doi: 10.1093/annonc/mdu479; pmid: 25319062
-
(2015)
Ann. Oncol
, vol.26
, pp. 64-70
-
-
Favero, F.1
-
57
-
-
84897954204
-
PyClone: Statistical inference of clonal population structure in cancer
-
A. Roth et al., PyClone: Statistical inference of clonal population structure in cancer. Nat. Methods 11, 396-398 (2014). Doi: 10.1038/nmeth.2883; pmid: 24633410
-
(2014)
Nat. Methods
, vol.11
, pp. 396-398
-
-
Roth, A.1
-
58
-
-
84976879317
-
Development of a prototype immunohistochemistry assay to measure programmed death ligand-1 expression in tumor tissue
-
pmid: 27788043
-
M. Dolled-Filhart et al., Development of a prototype immunohistochemistry assay to measure programmed death ligand-1 expression in tumor tissue. Arch. Pathol. Lab. Med. 140, 1259-1266 (2016). Doi: 10.5858/arpa.2015-0544-OA; pmid: 27788043
-
(2016)
Arch. Pathol. Lab. Med
, vol.140
, pp. 1259-1266
-
-
Dolled-Filhart, M.1
-
59
-
-
84995890821
-
Programmed death-ligand 1 expression and response to the anti-programmed death 1 antibody pembrolizumab in melanoma
-
pmid: 27863197
-
A. I. Daud et al., Programmed death-ligand 1 expression and response to the anti-programmed death 1 antibody pembrolizumab in melanoma. J. Clin. Oncol. 34, 4102-4109 (2016). Doi: 10.1200/JCO.2016.67.2477; pmid: 27863197
-
(2016)
J. Clin. Oncol
, vol.34
, pp. 4102-4109
-
-
Daud, A.I.1
|