메뉴 건너뛰기




Volumn 46, Issue 9, 2018, Pages 4425-4439

The IL-4/STAT6/PPARγ signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages

Author keywords

[No Author keywords available]

Indexed keywords

HETERODIMER; INTERLEUKIN 4; PEROXISOME PROLIFERATOR ACTIVATED RECEPTOR GAMMA; RETINOID X RECEPTOR; STAT6 PROTEIN; TRANSCRIPTION FACTOR; LIGAND; RNA POLYMERASE II; STAT6 PROTEIN, MOUSE;

EID: 85054167767     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gky157     Document Type: Article
Times cited : (51)

References (50)
  • 1
    • 84897147399 scopus 로고    scopus 로고
    • Nuclear receptors, RXR, and the big bang
    • Evans,R.M. and Mangelsdorf,D.J. (2014) Nuclear Receptors, RXR, and the Big Bang. Cell, 157, 255–266.
    • (2014) Cell , vol.157 , pp. 255-266
    • Evans, R.M.1    Mangelsdorf, D.J.2
  • 4
    • 0028175195 scopus 로고
    • RXR alpha mutant mice establish a genetic basis for vitamin a signaling in heart morphogenesis
    • Sucov,H.M., Dyson,E., Gumeringer,C.L., Price,J., Chien,K.R. and Evans,R.M. (1994) RXR alpha mutant mice establish a genetic basis for vitamin A signaling in heart morphogenesis. Genes Dev., 8, 1007–1018.
    • (1994) Genes Dev , vol.8 , pp. 1007-1018
    • Sucov, H.M.1    Dyson, E.2    Gumeringer, C.L.3    Price, J.4    Chien, K.R.5    Evans, R.M.6
  • 5
    • 0028168007 scopus 로고
    • Genetic analysis of RXR alpha developmental function: Convergence of RXR and RAR signaling pathways in heart and eye morphogenesis
    • Kastner,P., Grondona,J.M., Mark,M., Gansmuller,A., LeMeur,M., Decimo,D., Vonesch,J.L., Dolle,P. and Chambon,P. (1994) Genetic analysis of RXR alpha developmental function: convergence of RXR and RAR signaling pathways in heart and eye morphogenesis. Cell, 78, 987–1003.
    • (1994) Cell , vol.78 , pp. 987-1003
    • Kastner, P.1    Grondona, J.M.2    Mark, M.3    Gansmuller, A.4    LeMeur, M.5    Decimo, D.6    Vonesch, J.L.7    Dolle, P.8    Chambon, P.9
  • 6
    • 71349084776 scopus 로고    scopus 로고
    • Bexarotene: A promising anticancer agent
    • Qu,L. and Tang,X. (2010) Bexarotene: a promising anticancer agent. Cancer Chemother. Pharmacol., 65, 201–205.
    • (2010) Cancer Chemother. Pharmacol. , vol.65 , pp. 201-205
    • Qu, L.1    Tang, X.2
  • 7
    • 83255176681 scopus 로고    scopus 로고
    • The retinoid X receptors and their ligands
    • Dawson,M.I. and Xia,Z. (2012) The retinoid X receptors and their ligands. Biochim. Biophys. Acta, 1821, 21–56.
    • (2012) Biochim. Biophys. Acta , vol.1821 , pp. 21-56
    • Dawson, M.I.1    Xia, Z.2
  • 10
    • 84881135383 scopus 로고    scopus 로고
    • The role of lipid-activated nuclear receptors in shaping macrophage and dendritic cell function: From physiology to pathology
    • Kiss,M., Czimmerer,Z. and Nagy,L. (2013) The role of lipid-activated nuclear receptors in shaping macrophage and dendritic cell function: from physiology to pathology. J. Allergy Clin. Immunol., 132, 264–286.
    • (2013) J. Allergy Clin. Immunol. , vol.132 , pp. 264-286
    • Kiss, M.1    Czimmerer, Z.2    Nagy, L.3
  • 11
    • 84920724791 scopus 로고    scopus 로고
    • Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment
    • Lavin,Y., Winter,D., Blecher-Gonen,R., David,E., Keren-Shaul,H., Merad,M., Jung,S. and Amit,I. (2014) Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment. Cell, 159, 1312–1326.
    • (2014) Cell , vol.159 , pp. 1312-1326
    • Lavin, Y.1    Winter, D.2    Blecher-Gonen, R.3    David, E.4    Keren-Shaul, H.5    Merad, M.6    Jung, S.7    Amit, I.8
  • 14
    • 84908148912 scopus 로고    scopus 로고
    • Induction of the nuclear receptor PPAR-gamma by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages
    • Schneider,C., Nobs,S.P., Kurrer,M., Rehrauer,H., Thiele,C. and Kopf,M. (2014) Induction of the nuclear receptor PPAR-gamma by the cytokine GM-CSF is critical for the differentiation of fetal monocytes into alveolar macrophages. Nat. Immunol., 15, 1026–1037.
    • (2014) Nat. Immunol. , vol.15 , pp. 1026-1037
    • Schneider, C.1    Nobs, S.P.2    Kurrer, M.3    Rehrauer, H.4    Thiele, C.5    Kopf, M.6
  • 15
    • 84951320292 scopus 로고    scopus 로고
    • Molecular control of activation and priming in macrophages
    • Glass,C.K. and Natoli,G. (2016) Molecular control of activation and priming in macrophages. Nat. Immunol., 17, 26–33.
    • (2016) Nat. Immunol. , vol.17 , pp. 26-33
    • Glass, C.K.1    Natoli, G.2
  • 18
    • 77952567987 scopus 로고    scopus 로고
    • Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and b cell identities
    • Heinz,S., Benner,C., Spann,N., Bertolino,E., Lin,Y.C., Laslo,P., Cheng,J.X., Murre,C., Singh,H. and Glass,C.K. (2010) Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. Mol. Cell, 38, 576–589.
    • (2010) Mol. Cell , vol.38 , pp. 576-589
    • Heinz, S.1    Benner, C.2    Spann, N.3    Bertolino, E.4    Lin, Y.C.5    Laslo, P.6    Cheng, J.X.7    Murre, C.8    Singh, H.9    Glass, C.K.10
  • 21
    • 0025354250 scopus 로고
    • Immortalization of macrophages from mouse bone marrow and fetal liver
    • Gandino,L. and Varesio,L. (1990) Immortalization of macrophages from mouse bone marrow and fetal liver. Exp. Cell Res., 188, 192–198.
    • (1990) Exp. Cell Res. , vol.188 , pp. 192-198
    • Gandino, L.1    Varesio, L.2
  • 22
    • 84888877924 scopus 로고    scopus 로고
    • Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
    • Buenrostro,J.D., Giresi,P.G., Zaba,L.C., Chang,H.Y. and Greenleaf,W.J. (2013) Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position. Nat. Methods, 10, 1213–1218.
    • (2013) Nat. Methods , vol.10 , pp. 1213-1218
    • Buenrostro, J.D.1    Giresi, P.G.2    Zaba, L.C.3    Chang, H.Y.4    Greenleaf, W.J.5
  • 23
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li,H. and Durbin,R. (2009) Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics, 25, 1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 25
    • 84875634162 scopus 로고    scopus 로고
    • Integrative genomics viewer (IGV): High-performance genomics data visualization and exploration
    • Thorvaldsdottir,H., Robinson,J.T. and Mesirov,J.P. (2013) Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration. Brief. bioinformatics, 14, 178–192.
    • (2013) Brief. Bioinformatics , vol.14 , pp. 178-192
    • Thorvaldsdottir, H.1    Robinson, J.T.2    Mesirov, J.P.3
  • 26
    • 84921736532 scopus 로고    scopus 로고
    • Mapping the genomic binding sites of the activated retinoid X receptor in murine bone marrow-derived macrophages using chromatin immunoprecipitation sequencing
    • Daniel,B., Balint,B.L., Nagy,Z.S. and Nagy,L. (2014) Mapping the genomic binding sites of the activated retinoid X receptor in murine bone marrow-derived macrophages using chromatin immunoprecipitation sequencing. Methods Mol. Biol., 1204, 15–24.
    • (2014) Methods Mol. Biol. , vol.1204 , pp. 15-24
    • Daniel, B.1    Balint, B.L.2    Nagy, Z.S.3    Nagy, L.4
  • 30
    • 84944471180 scopus 로고    scopus 로고
    • Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics
    • Roy,S., Schmeier,S., Arner,E., Alam,T., Parihar,S.P., Ozturk,M., Tamgue,O., Kawaji,H., de Hoon,M.J., Itoh,M. et al. (2015) Redefining the transcriptional regulatory dynamics of classically and alternatively activated macrophages by deepCAGE transcriptomics. Nucleic Acids Res., 43, 6969–6982.
    • (2015) Nucleic Acids Res , vol.43 , pp. 6969-6982
    • Roy, S.1    Schmeier, S.2    Arner, E.3    Alam, T.4    Parihar, S.P.5    Ozturk, M.6    Tamgue, O.7    Kawaji, H.8    de Hoon, M.J.9    Itoh, M.10
  • 32
    • 78649388701 scopus 로고    scopus 로고
    • STAT6 transcription factor is a facilitator of the nuclear receptor PPARgamma-regulated gene expression in macrophages and dendritic cells
    • Szanto,A., Balint,B.L., Nagy,Z.S., Barta,E., Dezso,B., Pap,A., Szeles,L., Poliska,S., Oros,M., Evans,R.M. et al. (2010) STAT6 transcription factor is a facilitator of the nuclear receptor PPARgamma-regulated gene expression in macrophages and dendritic cells. Immunity, 33, 699–712.
    • (2010) Immunity , vol.33 , pp. 699-712
    • Szanto, A.1    Balint, B.L.2    Nagy, Z.S.3    Barta, E.4    Dezso, B.5    Pap, A.6    Szeles, L.7    Poliska, S.8    Oros, M.9    Evans, R.M.10
  • 37
    • 84962762646 scopus 로고    scopus 로고
    • A reservoir of mature cavity macrophages that can rapidly invade visceral organs to affect tissue repair
    • Wang,J. and Kubes,P. (2016) A reservoir of mature cavity macrophages that can rapidly invade visceral organs to affect tissue repair. Cell, 165, 668–678.
    • (2016) Cell , vol.165 , pp. 668-678
    • Wang, J.1    Kubes, P.2
  • 39
    • 84860116506 scopus 로고    scopus 로고
    • Nuclear hormone receptors enable macrophages and dendritic cells to sense their lipid environment and shape their immune response
    • Nagy,L., Szanto,A., Szatmari,I. and Szeles,L. (2012) Nuclear hormone receptors enable macrophages and dendritic cells to sense their lipid environment and shape their immune response. Physiol. Rev., 92, 739–789.
    • (2012) Physiol. Rev. , vol.92 , pp. 739-789
    • Nagy, L.1    Szanto, A.2    Szatmari, I.3    Szeles, L.4
  • 40
    • 12844252576 scopus 로고    scopus 로고
    • Retinoid X receptors: X-ploring their (patho)physiological functions
    • Szanto,A., Narkar,V., Shen,Q., Uray,I.P., Davies,P.J. and Nagy,L. (2004) Retinoid X receptors: X-ploring their (patho)physiological functions. Cell Death Differ., 11(Suppl. 2), S126–S143.
    • (2004) Cell Death Differ , vol.11 , pp. S126-S143
    • Szanto, A.1    Narkar, V.2    Shen, Q.3    Uray, I.P.4    Davies, P.J.5    Nagy, L.6
  • 42
    • 79955836460 scopus 로고    scopus 로고
    • A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells
    • Hah,N., Danko,C.G., Core,L., Waterfall,J.J., Siepel,A., Lis,J.T. and Kraus,W.L. (2011) A rapid, extensive, and transient transcriptional response to estrogen signaling in breast cancer cells. Cell, 145, 622–634.
    • (2011) Cell , vol.145 , pp. 622-634
    • Hah, N.1    Danko, C.G.2    Core, L.3    Waterfall, J.J.4    Siepel, A.5    Lis, J.T.6    Kraus, W.L.7
  • 44
    • 84926151217 scopus 로고    scopus 로고
    • TNFalpha signaling exposes latent estrogen receptor binding sites to alter the breast cancer cell transcriptome
    • Franco,H.L., Nagari,A. and Kraus,W.L. (2015) TNFalpha signaling exposes latent estrogen receptor binding sites to alter the breast cancer cell transcriptome. Mol. Cell, 58, 21–34.
    • (2015) Mol. Cell , vol.58 , pp. 21-34
    • Franco, H.L.1    Nagari, A.2    Kraus, W.L.3
  • 45
    • 3242784885 scopus 로고    scopus 로고
    • Mechanism of the nuclear receptor molecular switch
    • Nagy,L. and Schwabe,J.W. (2004) Mechanism of the nuclear receptor molecular switch. Trends Biochem. Sci., 29, 317–324.
    • (2004) Trends Biochem. Sci. , vol.29 , pp. 317-324
    • Nagy, L.1    Schwabe, J.W.2
  • 46
    • 84996787997 scopus 로고    scopus 로고
    • Command line analysis of ChIP-seq results
    • Barta,E. (2011) Command line analysis of ChIP-seq results. EMBnet.journal, 17, 13–17.
    • (2011) EMBnet.Journal , vol.17 , pp. 13-17
    • Barta, E.1
  • 47
    • 9444225935 scopus 로고    scopus 로고
    • Java treeview–extensible visualization of microarray data
    • Saldanha,A.J. (2004) Java Treeview–extensible visualization of microarray data. Bioinformatics, 20, 3246–3248.
    • (2004) Bioinformatics , vol.20 , pp. 3246-3248
    • Saldanha, A.J.1
  • 48
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • Consortium,E.P. (2012) An integrated encyclopedia of DNA elements in the human genome. Nature, 489, 57–74.
    • (2012) Nature , vol.489 , pp. 57-74
    • Consortium, E.P.1
  • 49
    • 84899493057 scopus 로고    scopus 로고
    • Ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
    • Shen,L., Shao,N., Liu,X. and Nestler,E. (2014) ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases. BMC Genomics, 15, 284.
    • (2014) BMC Genomics , vol.15 , pp. 284
    • Shen, L.1    Shao, N.2    Liu, X.3    Nestler, E.4
  • 50
    • 85026812343 scopus 로고    scopus 로고
    • Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages
    • Czimmerer,Z., Nagy,Z.S., Nagy,G., Horvath,A., Silye-Cseh,T., Kriston,A., Jonas,D., Sauer,S., Steiner,L., Daniel,B. et al. (2017) Extensive and functional overlap of the STAT6 and RXR cistromes in the active enhancer repertoire of human CD14+ monocyte derived differentiating macrophages. Mol.Cell. Endocrinol., doi:10.1016/j.mce.2017.07.034.
    • (2017) Mol.Cell. Endocrinol.
    • Czimmerer, Z.1    Nagy, Z.S.2    Nagy, G.3    Horvath, A.4    Silye-Cseh, T.5    Kriston, A.6    Jonas, D.7    Sauer, S.8    Steiner, L.9    Daniel, B.10


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.