메뉴 건너뛰기




Volumn 8, Issue 1, 2018, Pages

Prognostication and Risk Factors for Cystic Fibrosis via Automated Machine Learning

Author keywords

[No Author keywords available]

Indexed keywords

BIOLOGICAL MARKER;

EID: 85050676780     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/s41598-018-29523-2     Document Type: Article
Times cited : (62)

References (65)
  • 1
    • 56149086854 scopus 로고    scopus 로고
    • Genetic determinants and epidemiology of cystic fibrosis–related diabetes
    • PID: 18535191
    • Adler, A. I., Shine, B. S., Chamnan, P., Haworth, C. S. & Bilton, D. Genetic determinants and epidemiology of cystic fibrosis–related diabetes. Diabetes care 31, 1789–1794 (2008).
    • (2008) Diabetes care , vol.31 , pp. 1789-1794
    • Adler, A.I.1    Shine, B.S.2    Chamnan, P.3    Haworth, C.S.4    Bilton, D.5
  • 3
    • 84920412587 scopus 로고    scopus 로고
    • Cystic fibrosis foundation pulmonary guideline*. Pharmacologic approaches to prevention and eradication of initial pseudomonas aeruginosa infection
    • PID: 25549030
    • Mogayzel, P. J. Jr. et al. Cystic fibrosis foundation pulmonary guideline*. Pharmacologic approaches to prevention and eradication of initial pseudomonas aeruginosa infection. Annals of the American Thoracic Society 11, 1640–1650 (2014).
    • (2014) Annals of the American Thoracic Society , vol.11 , pp. 1640-1650
    • Mogayzel, P.J.1
  • 5
    • 84866137956 scopus 로고    scopus 로고
    • Progress in cystic fibrosis and the cf therapeutics development network
    • PID: 22960984
    • Rowe, S. M. et al. Progress in cystic fibrosis and the cf therapeutics development network. Thorax 67, 882–890 (2012).
    • (2012) Thorax , vol.67 , pp. 882-890
    • Rowe, S.M.1
  • 6
    • 84907343152 scopus 로고    scopus 로고
    • Longevity of patients with cystic fibrosis in 2000 to 2010 and beyond: Survival analysis of the cystic fibrosis foundation patient registrylifetime of patients with cystic fibrosis in 2000 to 2010 and beyond
    • PID: 25133359
    • MacKenzie, T. et al. Longevity of patients with cystic fibrosis in 2000 to 2010 and beyond: Survival analysis of the cystic fibrosis foundation patient registrylifetime of patients with cystic fibrosis in 2000 to 2010 and beyond. Annals of internal medicine 161, 233–241 (2014).
    • (2014) Annals of internal medicine , vol.161 , pp. 233-241
    • MacKenzie, T.1
  • 7
    • 0031925959 scopus 로고    scopus 로고
    • Cystic fibrosis: when to consider lung transplantation?
    • PID: 9596287
    • Flume, P. A. Cystic fibrosis: when to consider lung transplantation? Chest 113, 1159–1162 (1998).
    • (1998) Chest , vol.113 , pp. 1159-1162
    • Flume, P.A.1
  • 8
    • 0035814353 scopus 로고    scopus 로고
    • Survival effect of lung transplantation among patients with cystic fibrosis
    • PID: 11730443
    • Liou, T. G. et al. Survival effect of lung transplantation among patients with cystic fibrosis. Jama 286, 2683–2689 (2001).
    • (2001) Jama , vol.286 , pp. 2683-2689
    • Liou, T.G.1
  • 9
    • 62949187403 scopus 로고    scopus 로고
    • True survival benefit of lung transplantation for cystic fibrosis patients: the zurich experience
    • PID: 19332259
    • Hofer, M. et al. True survival benefit of lung transplantation for cystic fibrosis patients: the zurich experience. The Journal of Heart and Lung Transplantation 28, 334–339 (2009).
    • (2009) The Journal of Heart and Lung Transplantation , vol.28 , pp. 334-339
    • Hofer, M.1
  • 11
    • 18144404644 scopus 로고    scopus 로고
    • Use of lung transplantation survival models to refine patient selection in cystic fibrosis
    • PID: 15695493
    • Liou, T. G., Adler, F. R. & Huang, D. Use of lung transplantation survival models to refine patient selection in cystic fibrosis. American journal of respiratory and critical care medicine 171, 1053–1059 (2005).
    • (2005) American journal of respiratory and critical care medicine , vol.171 , pp. 1053-1059
    • Liou, T.G.1    Adler, F.R.2    Huang, D.3
  • 13
    • 84856410788 scopus 로고    scopus 로고
    • Selecting lung transplant candidates: where do current guidelines fall short?
    • PID: 22283579
    • Hook, J. L. & Lederer, D. J. Selecting lung transplant candidates: where do current guidelines fall short? Expert review of respiratory medicine 6, 51–61 (2012).
    • (2012) Expert review of respiratory medicine , vol.6 , pp. 51-61
    • Hook, J.L.1    Lederer, D.J.2
  • 16
    • 0031950258 scopus 로고    scopus 로고
    • Risk of death in cystic fibrosis patients with severely compromised lung function
    • PID: 9596299
    • Milla, C. E. & Warwick, W. J. Risk of death in cystic fibrosis patients with severely compromised lung function. Chest 113, 1230–1234 (1998).
    • (1998) Chest , vol.113 , pp. 1230-1234
    • Milla, C.E.1    Warwick, W.J.2
  • 17
    • 84895765518 scopus 로고    scopus 로고
    • Candidate markers associated with the probability of future pulmonary exacerbations in cystic fibrosis patients
    • PID: 24533110
    • Wojewodka, G. et al. Candidate markers associated with the probability of future pulmonary exacerbations in cystic fibrosis patients. PloS one 9, e88567 (2014).
    • (2014) PloS one , vol.9
    • Wojewodka, G.1
  • 18
    • 85050674920 scopus 로고    scopus 로고
    • Heterogeneity in survival among adult cystic fibrosis patients with fev1 < 30% of predicted in the united states
    • Ramos, K. et al. Heterogeneity in survival among adult cystic fibrosis patients with fev1 < 30% of predicted in the united states. CHEST (2017).
    • (2017) CHEST
    • Ramos, K.1
  • 19
    • 84872678750 scopus 로고    scopus 로고
    • Deaths in childhood from cystic fibrosis: 10-year analysis from two london specialist centres
    • PID: 23264431
    • Urquhart, D. S. et al. Deaths in childhood from cystic fibrosis: 10-year analysis from two london specialist centres. Archives of disease in childhood 98, 123–127 (2013).
    • (2013) Archives of disease in childhood , vol.98 , pp. 123-127
    • Urquhart, D.S.1
  • 21
    • 0030959076 scopus 로고    scopus 로고
    • A prognostic model for the prediction of survival in cystic fibrosis
    • PID: 9196511
    • Hayllar, K. M. et al. A prognostic model for the prediction of survival in cystic fibrosis. Thorax 52, 313–317 (1997).
    • (1997) Thorax , vol.52 , pp. 313-317
    • Hayllar, K.M.1
  • 22
    • 0035865730 scopus 로고    scopus 로고
    • Predictive 5-year survivorship model of cystic fibrosis
    • PID: 11207152
    • Liou, T. G. et al. Predictive 5-year survivorship model of cystic fibrosis. American journal of epidemiology 153, 345–352 (2001).
    • (2001) American journal of epidemiology , vol.153 , pp. 345-352
    • Liou, T.G.1
  • 23
    • 84855873023 scopus 로고    scopus 로고
    • Validation of a predictive survival model in italian patients with cystic fibrosis
    • PID: 21945182
    • Buzzetti, R. et al. Validation of a predictive survival model in italian patients with cystic fibrosis. Journal of Cystic Fibrosis 11, 24–29 (2012).
    • (2012) Journal of Cystic Fibrosis , vol.11 , pp. 24-29
    • Buzzetti, R.1
  • 24
    • 84945456434 scopus 로고    scopus 로고
    • A statistical model to predict one-year risk of death in patients with cystic fibrosis
    • PID: 25655532
    • Aaron, S. D., Stephenson, A. L., Cameron, D. W. & Whitmore, G. A. A statistical model to predict one-year risk of death in patients with cystic fibrosis. Journal of clinical epidemiology 68, 1336–1345 (2015).
    • (2015) Journal of clinical epidemiology , vol.68 , pp. 1336-1345
    • Aaron, S.D.1    Stephenson, A.L.2    Cameron, D.W.3    Whitmore, G.A.4
  • 25
    • 84872383454 scopus 로고    scopus 로고
    • (accessed Oct 1, 2017)
    • Cystic fibrosis trust, https://www.cysticfibrosis.org.uk/the-work-we-do/uk-cf-registry (accessed Oct 1, 2017).
    • Cystic fibrosis trust
  • 26
    • 84872383454 scopus 로고    scopus 로고
    • (accessed Oct 2, 2017)
    • Cystic fibrosis trust, https://www.cysticfibrosis.org.uk/the-work-we-do/uk-cf-registry/reporting-and-resources (accessed Oct 2, 2017).
    • Cystic fibrosis trust
  • 27
    • 85029458991 scopus 로고    scopus 로고
    • The success and promise of cf patient registries, Pediatric Pulmonology
    • Fink, A. K., Loeffler, D. R., Marshall, B. C., Goss, C. H. & Morgan, W. J. Data that empower: The success and promise of cf patient registries. Pediatric Pulmonology (2017).
    • (2017) Data that empower
  • 28
    • 84873046605 scopus 로고    scopus 로고
    • Data mining in healthcare and biomedicine: a survey of the literature
    • PID: 21537851
    • Yoo, I. et al. Data mining in healthcare and biomedicine: a survey of the literature. Journal of medical systems 36, 2431–2448 (2012).
    • (2012) Journal of medical systems , vol.36 , pp. 2431-2448
    • Yoo, I.1
  • 31
    • 84930631638 scopus 로고    scopus 로고
    • Probabilistic machine learning and artificial intelligence
    • PID: 26017444
    • Ghahramani, Z. Probabilistic machine learning and artificial intelligence. Nature 521, 452 (2015).
    • (2015) Nature , vol.521 , pp. 452
    • Ghahramani, Z.1
  • 33
    • 34249687044 scopus 로고    scopus 로고
    • A review of associative classification mining
    • Thabtah, F. A review of associative classification mining. The Knowledge Engineering Review 22, 37–65 (2007).
    • (2007) The Knowledge Engineering Review , vol.22 , pp. 37-65
    • Thabtah, F.1
  • 34
    • 85042031041 scopus 로고    scopus 로고
    • Automatically explaining machine learning prediction results: a demonstration on type 2 diabetes risk prediction
    • PID: 26958341
    • Luo, G. Automatically explaining machine learning prediction results: a demonstration on type 2 diabetes risk prediction. Health information science and systems 4, 2 (2016).
    • (2016) Health information science and systems , vol.4
    • Luo, G.1
  • 36
    • 85015777692 scopus 로고    scopus 로고
    • A 3-year prognostic score for adults with cystic fibrosis
    • Nkam, L. et al. A 3-year prognostic score for adults with cystic fibrosis. Journal of Cystic Fibrosis (2017).
    • (2017) Journal of Cystic Fibrosis
  • 38
    • 84855177476 scopus 로고    scopus 로고
    • Missforest—non-parametric missing value imputation for mixed-type data
    • PID: 22039212
    • Stekhoven, D. J. & Bühlmann, P. Missforest—non-parametric missing value imputation for mixed-type data. Bioinformatics 28, 112–118 (2011).
    • (2011) Bioinformatics , vol.28 , pp. 112-118
    • Stekhoven, D.J.1    Bühlmann, P.2
  • 39
    • 84877596549 scopus 로고    scopus 로고
    • The cf-able score: a novel clinical prediction rule for prognosis in patients with cystic fibrosis
    • McCarthy, C., Dimitrov, B. D., Meurling, I. J., Gunaratnam, C. & McElvaney, N. G. The cf-able score: a novel clinical prediction rule for prognosis in patients with cystic fibrosis. CHEST Journal 143, 1358–1364 (2013).
    • (2013) CHEST Journal , vol.143 , pp. 1358-1364
    • McCarthy, C.1    Dimitrov, B.D.2    Meurling, I.J.3    Gunaratnam, C.4    McElvaney, N.G.5
  • 41
    • 33745501826 scopus 로고    scopus 로고
    • International guidelines for the selection of lung transplant candidates: 2006 update—a consensus report from the pulmonary scientific council of the international society for heart and lung transplantation
    • PID: 16818116
    • Orens, J. B. et al. International guidelines for the selection of lung transplant candidates: 2006 update—a consensus report from the pulmonary scientific council of the international society for heart and lung transplantation. The Journal of heart and lung transplantation 25, 745–755 (2006).
    • (2006) The Journal of heart and lung transplantation , vol.25 , pp. 745-755
    • Orens, J.B.1
  • 43
    • 0023890867 scopus 로고
    • Measuring the accuracy of diagnostic systems
    • PID: 3287615
    • Swets, J. A. et al. Measuring the accuracy of diagnostic systems. Science 240, 1285–1293 (1988).
    • (1988) Science , vol.240 , pp. 1285-1293
    • Swets, J.A.1
  • 44
    • 84928911070 scopus 로고    scopus 로고
    • The precision-recall plot is more informative than the roc plot when evaluating binary classifiers on imbalanced datasets
    • PID: 25738806
    • Saito, T. & Rehmsmeier, M. The precision-recall plot is more informative than the roc plot when evaluating binary classifiers on imbalanced datasets. PloS one 10, e0118432 (2015).
    • (2015) PloS one , vol.10
    • Saito, T.1    Rehmsmeier, M.2
  • 45
    • 24144470799 scopus 로고    scopus 로고
    • Estimation of the youden index and its associated cutoff point
    • PID: 16161804
    • Fluss, R., Faraggi, D. & Reiser, B. Estimation of the youden index and its associated cutoff point. Biometrical journal 47, 458–472 (2005).
    • (2005) Biometrical journal , vol.47 , pp. 458-472
    • Fluss, R.1    Faraggi, D.2    Reiser, B.3
  • 46
    • 84970866422 scopus 로고
    • Diagnostic tests. 1: Sensitivity and specificity
    • PID: 8019315
    • Altman, D. G. & Bland, J. M. Diagnostic tests. 1: Sensitivity and specificity. BMJ: British Medical Journal 308, 1552 (1994).
    • (1994) BMJ: British Medical Journal , vol.308 , pp. 1552
    • Altman, D.G.1    Bland, J.M.2
  • 47
    • 34250727580 scopus 로고    scopus 로고
    • Davis, J. & Goadrich, MIn Proceedings of the 23rd international conference on Machine learning, 233–240 (ACM, 2006)
    • Davis, J. & Goadrich, M. The relationship between precision-recall and roc curves. In Proceedings of the 23rd international conference on Machine learning, 233–240 (ACM, 2006).
    • The relationship between precision-recall and roc curves
  • 50
    • 84961720030 scopus 로고    scopus 로고
    • Olson, R. S. et al. Applications of Evolutionary ComputationAutomating Biomedical Data Science Through Tree-Based Pipeline Optimization, 123–137, (Springer International Publishing, 2016).
    • Olson, R. S. et al. Applications of Evolutionary Computation: 19th European Conference, EvoApplications 2016, Porto, Portugal, March 30 – April 1, 2016, Proceedings, Part I, chap. Automating Biomedical Data Science Through Tree-Based Pipeline Optimization, 123–137, https://doi.org/10.1007/978-3-319-31204-0_9 (Springer International Publishing, 2016).
    • 19th European Conference, EvoApplications 2016, Porto, Portugal, March 30 – April 1, 2016, Proceedings, Part I, chap
  • 52
    • 84906952377 scopus 로고    scopus 로고
    • Clinical mechanism of the cystic fibrosis transmembrane conductance regulator potentiator ivacaftor in g551d-mediated cystic fibrosis
    • PID: 24927234
    • Rowe, S. M. et al. Clinical mechanism of the cystic fibrosis transmembrane conductance regulator potentiator ivacaftor in g551d-mediated cystic fibrosis. American journal of respiratory and critical care medicine 190, 175–184 (2014).
    • (2014) American journal of respiratory and critical care medicine , vol.190 , pp. 175-184
    • Rowe, S.M.1
  • 53
    • 84937035647 scopus 로고    scopus 로고
    • Lumacaftor–ivacaftor in patients with cystic fibrosis homozygous for phe508del cftr
    • PID: 25981758
    • Wainwright, C. E. et al. Lumacaftor–ivacaftor in patients with cystic fibrosis homozygous for phe508del cftr. New England Journal of Medicine 373, 220–231 (2015).
    • (2015) New England Journal of Medicine , vol.373 , pp. 220-231
    • Wainwright, C.E.1
  • 54
    • 75149147257 scopus 로고    scopus 로고
    • Diabetes as a determinant of mortality in cystic fibrosis
    • PID: 19918014
    • Chamnan, P., Shine, B. S., Haworth, C. S., Bilton, D. & Adler, A. I. Diabetes as a determinant of mortality in cystic fibrosis. Diabetes Care 33, 311–316 (2010).
    • (2010) Diabetes Care , vol.33 , pp. 311-316
    • Chamnan, P.1    Shine, B.S.2    Haworth, C.S.3    Bilton, D.4    Adler, A.I.5
  • 55
    • 84861865965 scopus 로고    scopus 로고
    • Gas exchange in disease: asthma, chronic obstructive pulmonary disease, cystic fibrosis, and interstitial lung disease
    • Young, I. H. & Bye, P. T. Gas exchange in disease: asthma, chronic obstructive pulmonary disease, cystic fibrosis, and interstitial lung disease. Comprehensive Physiology (2011).
    • (2011) Comprehensive Physiology
  • 56
    • 85050681071 scopus 로고    scopus 로고
    • 302 a retrospective review of renal function and intravenous (iv) antibiotic use in an adult uk cystic fibrosis centre
    • Ewence, A., Malone, S., Nutbourne, A., Higton, A. & Orchard, C. 302 a retrospective review of renal function and intravenous (iv) antibiotic use in an adult uk cystic fibrosis centre. Journal of Cystic Fibrosis 16, S139 (2017).
    • (2017) Journal of Cystic Fibrosis , vol.16 , pp. S139
    • Ewence, A.1    Malone, S.2    Nutbourne, A.3    Higton, A.4    Orchard, C.5
  • 58
    • 85020874979 scopus 로고    scopus 로고
    • Heterogeneity in survival amongadult cystic fibrosis patients with fev1 < 30% of predicted in the united states
    • KJ, R. et al. Heterogeneity in survival amongadult cystic fibrosis patients with fev1 < 30% of predicted in the united states. CHEST 151, 1320–1328 (2017).
    • (2017) CHEST , vol.151 , pp. 1320-1328
    • Kj, R.1
  • 59
    • 0027621699 scopus 로고    scopus 로고
    • Agrawal, R., Imieliński, T. & Swami, A. Mining association rules between sets of items in large databases22, 207–216 (ACM, 1993)
    • Agrawal, R., Imieliński, T. & Swami, A. Mining association rules between sets of items in large databases. In Acm sigmod record, vol. 22, 207–216 (ACM, 1993).
    • In Acm sigmod record, vol
  • 63
    • 80555140075 scopus 로고    scopus 로고
    • Scikit-learn: Machine learning in Python
    • Pedregosa, F. et al. Scikit-learn: Machine learning in Python. Journal of Machine Learning Research 12, 2825–2830 (2011).
    • (2011) Journal of Machine Learning Research , vol.12 , pp. 2825-2830
    • Pedregosa, F.1
  • 64
    • 85050651208 scopus 로고    scopus 로고
    • Ma, B. L. W. H. Y. & Liu, BIn Proceedings of the fourth international conference on knowledge discovery and data mining (1998)
    • Ma, B. L. W. H. Y. & Liu, B. Integrating classification and association rule mining. In Proceedings of the fourth international conference on knowledge discovery and data mining (1998).
    • Integrating classification and association rule mining
  • 65
    • 85050669748 scopus 로고
    • Multi-interval discretization of continuous-valued attributes for classification learning
    • Fayyad, U. & Irani, K. Multi-interval discretization of continuous-valued attributes for classification learning. JPL TRS (1993).
    • (1993) JPL TRS
    • Fayyad, U.1    Irani, K.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.