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Volumn 365, Issue 7, 2018, Pages

Isolation of marine xylene-utilizing bacteria and characterization of Halioxenophilus aromaticivorans gen. nov., sp. nov. and its xylene degradation gene cluster

Author keywords

Biodegradation; Degrading gene; Halioxenophilus aromaticivorans; Marine bacteria; Toluene xylene methyl monooxygenase pathway; xylene degrading bacteria

Indexed keywords

RNA 16S; XYLENE; BACTERIAL DNA; BACTERIAL PROTEIN; OXYGENASE; SEA WATER; XYLENE MONOOXYGENASE;

EID: 85050638234     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1093/femsle/fny042     Document Type: Letter
Times cited : (11)

References (54)
  • 1
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
    • Altschul SF, Madden TL, Schaffer AA et al. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997;25:3389-402
    • (1997) Nucleic Acids Res , vol.25 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3
  • 2
    • 0034491031 scopus 로고    scopus 로고
    • InterPro-an integrated documentation resource for protein families, domains and functional sites
    • Apweiler R, Attwood TK, Bairoch A et al. InterPro-an integrated documentation resource for protein families, domains and functional sites. Bioinformatics 2000;16:1145-50
    • (2000) Bioinformatics , vol.16 , pp. 1145-1150
    • Apweiler, R.1    Attwood, T.K.2    Bairoch, A.3
  • 3
    • 0025005226 scopus 로고
    • The TOL plasmids: determinants of the catabolism of toluene and the xylenes
    • Assinder SJ, Williams PA. The TOL plasmids: determinants of the catabolism of toluene and the xylenes. Adv Microb Physiol 1990;31:1-69
    • (1990) Adv Microb Physiol , vol.31 , pp. 1-69
    • Assinder, S.J.1    Williams, P.A.2
  • 4
    • 3242883431 scopus 로고    scopus 로고
    • PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins
    • Bagos PG, Liakopoulos TD, Spyropoulos IC et al. PRED-TMBB: a web server for predicting the topology of beta-barrel outer membrane proteins. Nucleic Acids Res 2004;1:W400-4
    • (2004) Nucleic Acids Res , vol.1 , pp. W400-W404
    • Bagos, P.G.1    Liakopoulos, T.D.2    Spyropoulos, I.C.3
  • 5
    • 0001902484 scopus 로고
    • Alternative pathways for o-xylene or m-xylene and p-xylene degradation in a Pseu domonas stutzeri stutzeri strain
    • Barbieri P, Palladino L, Di Gennaro P et al. Alternative pathways for o-xylene or m-xylene and p-xylene degradation in a Pseu domonas stutzeri stutzeri strain. Biodegradation 1993;4:71-80
    • (1993) Biodegradation , vol.4 , pp. 71-80
    • Barbieri, P.1    Palladino, L.2    Di Gennaro, P.3
  • 6
    • 77949916622 scopus 로고    scopus 로고
    • First evidence of aerobic biodegradation of BTEX compounds by pure cultures of Marinobacter
    • Berlendis S, Cayol J-L, Verhé F et al. First evidence of aerobic biodegradation of BTEX compounds by pure cultures of Marinobacter. Appl Biochem Biotech 2010;160:1992-9
    • (2010) Appl Biochem Biotech , vol.160 , pp. 1992-1999
    • Berlendis, S.1    Cayol, J.-L.2    Verhé, F.3
  • 7
    • 0031684004 scopus 로고    scopus 로고
    • Analysis of the gene cluster encoding toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1
    • Bertoni G, Martino M, Galli E et al. Analysis of the gene cluster encoding toluene/o-xylene monooxygenase from Pseudomonas stutzeri OX1. Appl Environ Microbiol 1998;64:3626-32
    • (1998) Appl Environ Microbiol , vol.64 , pp. 3626-3632
    • Bertoni, G.1    Martino, M.2    Galli, E.3
  • 8
    • 0036383413 scopus 로고    scopus 로고
    • Biotransformation of pxylene and 2, 6-dimethylnaphthalene by xylene monooxygenase cloned from a Sphingomonas isolate
    • Bramucci M, Singh M, Nagarajan V. Biotransformation of pxylene and 2, 6-dimethylnaphthalene by xylene monooxygenase cloned from a Sphingomonas isolate. Appl Microbiol Biot 2002;59:679-84
    • (2002) Appl Microbiol Biot , vol.59 , pp. 679-684
    • Bramucci, M.1    Singh, M.2    Nagarajan, V.3
  • 9
    • 79961085390 scopus 로고    scopus 로고
    • Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera
    • Chen MH, Sheu SY, Arun AB et al. Pseudoteredinibacter isoporae gen. nov., sp. nov., a marine bacterium isolated from the reef-building coral Isopora palifera. Int J Syst Evol Microbiol 2011;61:1887-93
    • (2011) Int J Syst Evol Microbiol , vol.61 , pp. 1887-1893
    • Chen, M.H.1    Sheu, S.Y.2    Arun, A.B.3
  • 10
    • 0027093793 scopus 로고
    • Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S]
    • Correll CC, Batie CJ, Ballou DP et al. Phthalate dioxygenase reductase: a modular structure for electron transfer from pyridine nucleotides to [2Fe-2S]. Science 1992;258:1604-10
    • (1992) Science , vol.258 , pp. 1604-1610
    • Correll, C.C.1    Batie, C.J.2    Ballou, D.P.3
  • 11
    • 0027365610 scopus 로고
    • Structural prototypes for an extended family of flavoprotein reductases: comparison of phthalate dioxygenase reductase with ferredoxin reductase and ferredoxin
    • Correll CC, Ludwig ML, Bruns CM et al. Structural prototypes for an extended family of flavoprotein reductases: comparison of phthalate dioxygenase reductase with ferredoxin reductase and ferredoxin. Protein Sci 1993;2:2112-33
    • (1993) Protein Sci , vol.2 , pp. 2112-2133
    • Correll, C.C.1    Ludwig, M.L.2    Bruns, C.M.3
  • 12
    • 0034854206 scopus 로고    scopus 로고
    • Sequence-structure analysis of FADcontaining proteins
    • Dym O, Eisenberg D. Sequence-structure analysis of FADcontaining proteins. Protein Sci 2001;10:1712-28
    • (2001) Protein Sci , vol.10 , pp. 1712-1728
    • Dym, O.1    Eisenberg, D.2
  • 14
    • 85016141786 scopus 로고    scopus 로고
    • InterPro in 2017-beyond protein family and domain annotations
    • Finn RD, Attwood TK, Babbitt PC et al. InterPro in 2017-beyond protein family and domain annotations. Nucleic Acids Res 2017;45:D190-9
    • (2017) Nucleic Acids Res , vol.45 , pp. D190-D199
    • Finn, R.D.1    Attwood, T.K.2    Babbitt, P.C.3
  • 15
    • 0016295267 scopus 로고
    • Bacterial metabolism of para-and meta-xylene: oxidation of the aromatic ring
    • Gibson DT, Mahadevan V, Davey JF. Bacterial metabolism of para-and meta-xylene: oxidation of the aromatic ring. J Bacteriol 1974;119:930-6
    • (1974) J Bacteriol , vol.119 , pp. 930-936
    • Gibson, D.T.1    Mahadevan, V.2    Davey, J.F.3
  • 16
    • 84962094387 scopus 로고    scopus 로고
    • Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae
    • Guo LY, Li DQ, Sang J et al. Marinagarivorans algicola gen. nov., sp. nov., isolated from marine algae. Int J Syst Evol Microbiol 2016;66:1593-9
    • (2016) Int J Syst Evol Microbiol , vol.66 , pp. 1593-1599
    • Guo, L.Y.1    Li, D.Q.2    Sang, J.3
  • 17
    • 0022450932 scopus 로고
    • Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product
    • Harayama S, Leppik RA, Rekik M et al. Gene order of the TOL catabolic plasmid upper pathway operon and oxidation of both toluene and benzyl alcohol by the xylA product. J Bacteriol 1986;167:455-61
    • (1986) J Bacteriol , vol.167 , pp. 455-461
    • Harayama, S.1    Leppik, R.A.2    Rekik, M.3
  • 18
    • 0027525666 scopus 로고
    • Aldehyde dehydrogenases: widespread structural and functional diversity within a shared framework
    • Hempel J, Nicholas H, Lindahl R. Aldehyde dehydrogenases: widespread structural and functional diversity within a shared framework. Protein Sci 1993;2:1890-900
    • (1993) Protein Sci , vol.2 , pp. 1890-1900
    • Hempel, J.1    Nicholas, H.2    Lindahl, R.3
  • 19
    • 30944440673 scopus 로고    scopus 로고
    • Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site
    • Hendrickx B, Junca H, Vosahlova J et al. Alternative primer sets for PCR detection of genotypes involved in bacterial aerobic BTEX degradation: distribution of the genes in BTEX degrading isolates and in subsurface soils of a BTEX contaminated industrial site. J Microbiol Methods 2006;64:250-65
    • (2006) J Microbiol Methods , vol.64 , pp. 250-265
    • Hendrickx, B.1    Junca, H.2    Vosahlova, J.3
  • 20
    • 0029845236 scopus 로고    scopus 로고
    • Escherichia coli promoter sequences: analysis and prediction
    • Hertz GZ, Stormo GD. Escherichia coli promoter sequences: analysis and prediction. Methods Enzymol 1996;273:30-42
    • (1996) Methods Enzymol , vol.273 , pp. 30-42
    • Hertz, G.Z.1    Stormo, G.D.2
  • 21
    • 0028958160 scopus 로고
    • Overlapping substrate specificities of benzaldehyde dehydrogenase (the xylC gene product) and 2-hydroxymuconic semialdehyde dehydrogenase (the xylG gene product) encoded by TOL plasmid pWW0 of Pseu domonas putida
    • Inoue J, Shaw JP, Rekik M et al. Overlapping substrate specificities of benzaldehyde dehydrogenase (the xylC gene product) and 2-hydroxymuconic semialdehyde dehydrogenase (the xylG gene product) encoded by TOL plasmid pWW0 of Pseu domonas putida. J Bacteriol 1995;177:1196-201
    • (1995) J Bacteriol , vol.177 , pp. 1196-1201
    • Inoue, J.1    Shaw, J.P.2    Rekik, M.3
  • 22
    • 84898857024 scopus 로고    scopus 로고
    • Isolation and characterization of marine nonylphenol-degrading bacteria and description of Pseudomaricurvus alkylphenolicus gen. nov., sp. nov
    • Iwaki H, Fujioka M, Hasegawa Y. Isolation and characterization of marine nonylphenol-degrading bacteria and description of Pseudomaricurvus alkylphenolicus gen. nov., sp. nov. Curr Microbiol 2014;68:167-73
    • (2014) Curr Microbiol , vol.68 , pp. 167-173
    • Iwaki, H.1    Fujioka, M.2    Hasegawa, Y.3
  • 23
    • 84856660725 scopus 로고    scopus 로고
    • Isolation and characterization of marine bacteria capable of utilizing phthalate
    • Iwaki H, Nishimura A, Hasegawa Y. Isolation and characterization of marine bacteria capable of utilizing phthalate. World J Microb Biot 2012;28:1321-5
    • (2012) World J Microb Biot , vol.28 , pp. 1321-1325
    • Iwaki, H.1    Nishimura, A.2    Hasegawa, Y.3
  • 24
    • 85050636897 scopus 로고    scopus 로고
    • Isolation and genetic characterization of phenol-utilizing marine bacteria and their phenol degradation pathway
    • Iwaki H, Takada K, Hasegawa Y. Isolation and genetic characterization of phenol-utilizing marine bacteria and their phenol degradation pathway. IJGG 2015;3:20-5
    • (2015) IJGG , vol.3 , pp. 20-25
    • Iwaki, H.1    Takada, K.2    Hasegawa, Y.3
  • 25
    • 84855806683 scopus 로고    scopus 로고
    • Maricurvus nonylphenolicus gen. nov., sp. nov., a nonylphenol-degrading bacterium isolated from seawater
    • Iwaki H, Takada K, Hasegawa Y. Maricurvus nonylphenolicus gen. nov., sp. nov., a nonylphenol-degrading bacterium isolated from seawater. FEMS Microbiol Lett 2012;327:142-7
    • (2012) FEMS Microbiol Lett , vol.327 , pp. 142-147
    • Iwaki, H.1    Takada, K.2    Hasegawa, Y.3
  • 26
    • 84879461319 scopus 로고    scopus 로고
    • Isolation and characterization of a marine cyclohexylacetate-degrading bacterium Lutimaribacter litoralis sp. nov., and reclassification of Oceanicola pacificus as Lutimaribacter pacificus comb. nov
    • Iwaki H, Yasukawa N, Fujioka M et al. Isolation and characterization of a marine cyclohexylacetate-degrading bacterium Lutimaribacter litoralis sp. nov., and reclassification of Oceanicola pacificus as Lutimaribacter pacificus comb. nov. Curr Microbiol 2013;66:588-93
    • (2013) Curr Microbiol , vol.66 , pp. 588-593
    • Iwaki, H.1    Yasukawa, N.2    Fujioka, M.3
  • 27
    • 24944460149 scopus 로고    scopus 로고
    • Isolation and characterization of a Rhodococcus species strain able to grow on ortho-and paraxylene
    • Jang JY, Kim D, Bae HW et al. Isolation and characterization of a Rhodococcus species strain able to grow on ortho-and paraxylene. J Microbiol 2005;43:325-30
    • (2005) J Microbiol , vol.43 , pp. 325-330
    • Jang, J.Y.1    Kim, D.2    Bae, H.W.3
  • 28
    • 84883463270 scopus 로고    scopus 로고
    • Isolation of a BTEX-degrading bacterium, Janibacter sp. SB2, from a sea-tidal flat and optimization of biodegradation conditions
    • Jin HM, Choi EJ, Jeon CO. Isolation of a BTEX-degrading bacterium, Janibacter sp. SB2, from a sea-tidal flat and optimization of biodegradation conditions. Bioresour Technol 2013;145:57-64
    • (2013) Bioresour Technol , vol.145 , pp. 57-64
    • Jin, H.M.1    Choi, E.J.2    Jeon, C.O.3
  • 29
    • 84860381912 scopus 로고    scopus 로고
    • Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment
    • Jin HM, Kim JM, Lee HJ et al. Alteromonas as a key agent of polycyclic aromatic hydrocarbon biodegradation in crude oil-contaminated coastal sediment. Environ Sci Technol 2012;46:7731-40
    • (2012) Environ Sci Technol , vol.46 , pp. 7731-7740
    • Jin, H.M.1    Kim, J.M.2    Lee, H.J.3
  • 30
    • 0043235939 scopus 로고    scopus 로고
    • Bacterial aerobic degradation of benzene, toluene, ethylbenzene and xylene
    • Jindrová E, Chocová M, Demnerová K et al. Bacterial aerobic degradation of benzene, toluene, ethylbenzene and xylene. Folia Microbiol 2002;47:83-93
    • (2002) Folia Microbiol , vol.47 , pp. 83-93
    • Jindrová, E.1    Chocová, M.2    Demnerová, K.3
  • 31
    • 0034750149 scopus 로고    scopus 로고
    • The TOL plasmid pWW0 xylN gene product fromPseudomonas putida is involved in m-Xylene uptake
    • Kasai Y, Inoue J, Harayama S. The TOL plasmid pWW0 xylN gene product fromPseudomonas putida is involved in m-Xylene uptake. J Bacteriol 2001;183:6662-6
    • (2001) J Bacteriol , vol.183 , pp. 6662-6666
    • Kasai, Y.1    Inoue, J.2    Harayama, S.3
  • 32
    • 10444279326 scopus 로고    scopus 로고
    • Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. strain DK17
    • Kim D, Chae JC, Zylstra GJ et al. Identification of a novel dioxygenase involved in metabolism of o-xylene, toluene, and ethylbenzene by Rhodococcus sp. strain DK17. Appl EnvironMicrobiol 2004;70:7086-92
    • (2004) Appl EnvironMicrobiol , vol.70 , pp. 7086-7092
    • Kim, D.1    Chae, J.C.2    Zylstra, G.J.3
  • 33
    • 0036304123 scopus 로고    scopus 로고
    • Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17
    • Kim D, Kim YS, Kim SK et al. Monocyclic aromatic hydrocarbon degradation by Rhodococcus sp. strain DK17. Appl Environ Microbiol 2002:68:3270-8
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3270-3278
    • Kim, D.1    Kim, Y.S.2    Kim, S.K.3
  • 34
    • 0029056671 scopus 로고
    • Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp strain B1
    • Kim E, Zylstra GJ.Molecular and biochemical characterization of two meta-cleavage dioxygenases involved in biphenyl and m-xylene degradation by Beijerinckia sp. strain B1. J Bacteriol 1995;177:3095-103
    • (1995) J Bacteriol , vol.177 , pp. 3095-3103
    • Kim, E.1    Zylstra, G.J.2
  • 35
    • 0033402149 scopus 로고    scopus 로고
    • Functional analysis of genes involved in biphenyl, naphthalene, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae B1
    • Kim E, Zylstra GJ. Functional analysis of genes involved in biphenyl, naphthalene, phenanthrene, and m-xylene degradation by Sphingomonas yanoikuyae B1. J Ind Microbiol Biotechnol 1999;23:294-302
    • (1999) J Ind Microbiol Biotechnol , vol.23 , pp. 294-302
    • Kim, E.1    Zylstra, G.J.2
  • 36
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • In: Stackebrandt E, Goodfellow M (eds). Chichester, United Kingdom: Wiley
    • Lane DJ. 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds). Nucleic Acid Techniques in Bacterial Systematics. Chichester, United Kingdom: Wiley, 1991;115-75
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 37
    • 85016162260 scopus 로고    scopus 로고
    • CDD/SPARCLE: functional classification of proteins via subfamily domain architectures
    • Marchler-Bauer A, Bo Y, Han L et al. CDD/SPARCLE: functional classification of proteins via subfamily domain architectures. Nucleic Acids Res 2017;45:D200-3
    • (2017) Nucleic Acids Res , vol.45 , pp. D200-D203
    • Marchler-Bauer, A.1    Bo, Y.2    Han, L.3
  • 38
    • 29144454726 scopus 로고    scopus 로고
    • Isolation and characterization of o-xylene oxygenase genes from Rhodococcus opacus TKN14
    • Maruyama T, Ishikura M, Taki H et al. Isolation and characterization of o-xylene oxygenase genes from Rhodococcus opacus TKN14. Appl Environ Microbiol 2005;71:7705-15
    • (2005) Appl Environ Microbiol , vol.71 , pp. 7705-7715
    • Maruyama, T.1    Ishikura, M.2    Taki, H.3
  • 39
    • 77955555124 scopus 로고    scopus 로고
    • Dioxygen activation responsible for oxidation of aliphatic and aromatic hydrocarbon compounds: current state and variants
    • Morikawa M. Dioxygen activation responsible for oxidation of aliphatic and aromatic hydrocarbon compounds: current state and variants. Appl Microbiol Biot 2010;87:1595-603
    • (2010) Appl Microbiol Biot , vol.87 , pp. 1595-1603
    • Morikawa, M.1
  • 40
    • 84855768065 scopus 로고    scopus 로고
    • Determination method of 16S rRNA gene sequence
    • In: The Society for Antinomycetes (ed.). Tokyo: Business Center for Academic Societies Japan(in Japanese)
    • Nakagawa K, Kawasaki H. Determination method of 16S rRNA gene sequence. In: The Society for Antinomycetes (ed.). The Isolation and Characterization of Actinomycetes. Tokyo: Business Center for Academic Societies Japan. 2001;88-117 (in Japanese)
    • (2001) The Isolation and Characterization of Actinomycetes , pp. 88-117
    • Nakagawa, K.1    Kawasaki, H.2
  • 41
    • 0023691425 scopus 로고
    • Genetic applicationsof an inverse polymerase chain reaction
    • Ochman H, Gerber AS, Hartl DL. Genetic applicationsof an inverse polymerase chain reaction. Genetics 1988;120:621-3
    • (1988) Genetics , vol.120 , pp. 621-623
    • Ochman, H.1    Gerber, A.S.2    Hartl, D.L.3
  • 42
    • 84909996503 scopus 로고    scopus 로고
    • Simiduia aestuariiviva sp. nov., a gammaproteobacterium isolated from a tidal flat sediment
    • Park S, Kim SI, Kang CH et al. Simiduia aestuariiviva sp. nov., a gammaproteobacterium isolated from a tidal flat sediment. A Van Lee 2014;106:927-34
    • (2014) A Van Lee , vol.106 , pp. 927-934
    • Park, S.1    Kim, S.I.2    Kang, C.H.3
  • 43
    • 80053345905 scopus 로고    scopus 로고
    • SignalP 4.0: discriminating signal peptides from transmembrane regions
    • Petersen TN, Brunak S, von Heijne G et al. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods 2011;8:785-6
    • (2011) Nat Methods , vol.8 , pp. 785-786
    • Petersen, T.N.1    Brunak, S.2    von Heijne, G.3
  • 44
    • 0030860391 scopus 로고    scopus 로고
    • Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators
    • Ramos JL, Marqués S, Timmis KN. Transcriptional control of the Pseudomonas TOL plasmid catabolic operons is achieved through an interplay of host factors and plasmid-encoded regulators. Annu Rev Microbiol 1997;51:341-73
    • (1997) Annu Rev Microbiol , vol.51 , pp. 341-373
    • Ramos, J.L.1    Marqués, S.2    Timmis, K.N.3
  • 45
    • 0345451054 scopus 로고    scopus 로고
    • Alkane hydroxylase from Acinetobacter sp. strain ADP1 is encoded by alkM and belongs to a new family of bacterial integral-membrane hydrocarbon hydroxylases
    • Ratajczak A, Geissdörfer W, Hillen W. Alkane hydroxylase from Acinetobacter sp. strain ADP1 is encoded by alkM and belongs to a new family of bacterial integral-membrane hydrocarbon hydroxylases. Appl Environ Microbiol 1998;64:1175-9
    • (1998) Appl Environ Microbiol , vol.64 , pp. 1175-1179
    • Ratajczak, A.1    Geissdörfer, W.2    Hillen, W.3
  • 46
    • 0028212644 scopus 로고
    • Molecular characterization of microbial alcohol dehydrogenases
    • Reid MF, Fewson CA. Molecular characterization of microbial alcohol dehydrogenases. Crit Rev Microbiol 1994;20:13-56
    • (1994) Crit Rev Microbiol , vol.20 , pp. 13-56
    • Reid, M.F.1    Fewson, C.A.2
  • 47
    • 0028089687 scopus 로고
    • Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase
    • Shanklin J, Whittle E, Fox BG. Eight histidine residues are catalytically essential in a membrane-associated iron enzyme, stearoyl-CoA desaturase, and are conserved in alkane hydroxylase and xylene monooxygenase. Biochemistry 1994;33:12787-94
    • (1994) Biochemistry , vol.33 , pp. 12787-12794
    • Shanklin, J.1    Whittle, E.2    Fox, B.G.3
  • 48
    • 0027156189 scopus 로고
    • Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4
    • Simon MJ, Osslund TD, Saunders R et al. Sequences of genes encoding naphthalene dioxygenase in Pseudomonas putida strains G7 and NCIB 9816-4. Gene 1993;127:31-7
    • (1993) Gene , vol.127 , pp. 31-37
    • Simon, M.J.1    Osslund, T.D.2    Saunders, R.3
  • 49
    • 0025963052 scopus 로고
    • Primary structure of xylene monooxygenase: similarities to and differences from the alkane hydroxylation system
    • Suzuki M, Hayakawa T, Shaw JP et al. Primary structure of xylene monooxygenase: similarities to and differences from the alkane hydroxylation system. J Bacteriol 1991;173:1690-5
    • (1991) J Bacteriol , vol.173 , pp. 1690-1695
    • Suzuki, M.1    Hayakawa, T.2    Shaw, J.P.3
  • 50
    • 84890330527 scopus 로고    scopus 로고
    • MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
    • Tamura K, Stecher G, Peterson D et al. MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0. Mol Biol Evol 2013;30:2725-9
    • (2013) Mol Biol Evol , vol.30 , pp. 2725-2729
    • Tamura, K.1    Stecher, G.2    Peterson, D.3
  • 51
    • 43049152774 scopus 로고    scopus 로고
    • Isolation, gene detection and solvent tolerance of benzene, toluene and xylene degrading bacteria from nearshore surface water and Pacific Ocean sediment
    • Wang L, Qiao N, Sun F et al. Isolation, gene detection and solvent tolerance of benzene, toluene and xylene degrading bacteria from nearshore surface water and Pacific Ocean sediment. Extremophiles 2008;12:335-42
    • (2008) Extremophiles , vol.12 , pp. 335-342
    • Wang, L.1    Qiao, N.2    Sun, F.3
  • 52
    • 0031024264 scopus 로고    scopus 로고
    • xyIUW, two genes at the start of the upper pathway operon of TOL plasmid pWWO, appear to play no essential part in determining its catabolic phenotype
    • Williams PA, Shaw LM, Pitt CW et al. xyIUW, two genes at the start of the upper pathway operon of TOL plasmid pWWO, appear to play no essential part in determining its catabolic phenotype. Microbiology 1997; 143:101-7
    • (1997) Microbiology , vol.143 , pp. 101-107
    • Williams, P.A.1    Shaw, L.M.2    Pitt, C.W.3
  • 53
    • 53149151882 scopus 로고    scopus 로고
    • Physical, kinetic and spectrophotometric studies of a NAD(P)-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633
    • Yeung CK, Yep A, Kenyon GL et al. Physical, kinetic and spectrophotometric studies of a NAD(P)-dependent benzaldehyde dehydrogenase from Pseudomonas putida ATCC 12633. Biochim Biophys Acta 2008; 1784:1248-55
    • (2008) Biochim Biophys Acta , vol.1784 , pp. 1248-1255
    • Yeung, C.K.1    Yep, A.2    Kenyon, G.L.3
  • 54
    • 77954199597 scopus 로고    scopus 로고
    • PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes
    • Yu NY, Wagner JR, Laird MR et al. PSORTb 3.0: Improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics 2010;26:1608-15
    • (2010) Bioinformatics , vol.26 , pp. 1608-1615
    • Yu, N.Y.1    Wagner, J.R.2    Laird, M.R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.