Escherichia coli promoter sequences: Analysis and prediction

Methods in Enzymology

Volumn 273, Issue , 1996, Pages 30-42

  Hertz, Gerald Z ^a   Stormo, Gary D ^a  

^a NONE

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENE; DNA SEQUENCE; ESCHERICHIA COLI; GENE EXPRESSION REGULATION; MOLECULAR INTERACTION; MOLECULAR RECOGNITION; NONHUMAN; PRIORITY JOURNAL; PROMOTER REGION; PROTEIN DNA INTERACTION; TRANSCRIPTION REGULATION;

EID: 0029845236     PISSN: 00766879     EISSN: None     Source Type: Book Series    
DOI: 10.1016/s0076-6879(96)73004-5     Document Type: Article

References (37)

1. R. R. Burgess, A. A. Travers, J. J. Dunn, and E. K. F. Bautz, Nature (London) 221, 43 (1969).
2. J. D. Helmann and M. J. Chamberlin, Annu. Rev. Biochem. 57, 839 (1988).
3. D. Pribnow, Proc. Natl. Acad. Sci. U.S.A. 72, 784 (1975).
4. P. H. Seeburg, C. Nüsslein, and H. Schaller, Eur. J. Biochem. 74, 107 (1977).
5. M. Rosenberg and D. Court, Annu. Rev. Genet. 13, 319 (1979).
6. D. K. Hawley and W. R. McClure, Nucleic Acids Res. 11, 2237 (1983).
7. O. Raibaud and M. Schwartz, Annu. Rev. Genet. 18, 173 (1984).
8. C. B. Harley and R. P. Reynolds, Nucleic Acids Res. 15, 2343 (1987).
9. S. Lisser and H. Margalit, Nucleic Acids Res. 21, 1507 (1993).
10. D. J. Galas, M. Eggert, and M. S. Waterman, J. Mol. Biol. 186, 117 (1985).
11. G. Mengeritsky and T. F. Smith, Comput. Appl. Biosci. 3, 223 (1987).
12. G. D. Stormo, T. D. Schneider, L. Gold, and A. Ehrenfeucht, Nucleic Acids Res. 10, 2997 (1982).
13. R. Harr, M. Häggström, and P. Gustafsson, Nucleic Acids Res. 11, 2943 (1983).
14. R. Staden, Nucleic Acids Res. 12, 505 (1984).
15. M. E. Mulligan, D. K. Hawley, R. Entriken, and W. R. McClure, Nucleic Acids Res. 12, 789 (1984).
16. G. D. Stormo, T. D. Schneider, and L. Gold, Nucleic Acids Res. 14, 6661 (1986).
17. D. Barrick, K. Villanueba, J. Childs, R. Kalil, T. D. Schneider, C. E. Lawrence, L. Gold, and G. D. Stormo, Nucleic Acids Res. 22, 1287 (1994).
18. O. G. Berg and P. H. von Hippel, J. Mol. Biol. 193, 723 (1987).
19. G. D. Stormo, Methods Enzymol 183, 211 (1990).
20. B. Demeler and G. Zhou, Nucleic Acids Res. 19, 1593 (1991).
21. M. C. O'Neill, Nucleic Acids Res. 20, 3471 (1992).
22. P. B. Horton and M. Kanehisa, Nucleic Acids Res. 20, 4331 (1992).
23. L. R. Cardon and G. D. Stormo, J. Mol. Biol. 223, 159 (1992).
24. J. Collado-Vides, B. Magasanik, and J. D. Gralla, Microbiol. Rev. 55, 371 (1991).
25. J. Collado-Vides, BioSystems 29, 87 (1993).
26. H. Moyle, C. Waldburger, and M. M. Susskind, J. Bacteriol, 173, 1944 (1991).
27. M. C. O'Neill, J. Biol. Chem. 264, 5522 (1989).
28. B. A. Beutel and M. T. Record Jr., Nucleic Acids Res. 18, 3597 (1990).
29. L. Rao, W. Ross, J. A. Appleman, T. Gaal, S. Leirmo, P. J. Schlax, M. T. Record Jr., and R. L. Gourse, J. Mol. Biol. 235, 1421 (1994).
30. M. Ozaki, N. Fujita, A. Wada, and A. Ishihama, Nucleic Acids Res. 20, 257 (1992).
31. K. Tanaka, S. Kusano, N. Fujita, A. Ishihama, and H. Takahashi, Nucleic Acids Res. 23, 827 (1995).
32. C. E. Lawrence and A. A. Reilly, Proteins 7, 41 (1990).
33. A. Krogh, M. Brown, I. S. Mian, K. Sjölander, and D. Haussler, J. Mol. Biol. 235, 1501 (1994).
34. P. Baldi, Y. Chauvin, T. Hunkapiller, and M. A. McClure, Proc. Natl. Acad. Sci. U.S.A. 91, 1059 (1994).
35. G. Z. Hertz and G. D. Stormo, in "The Third International Conference on Bioinformatics and Genome Research" (H. A. Lim and C. R. Cantor, eds.). World Scientific Publishing, Singapore, p. 199 (1994).
36. C. E. Lawrence, S. F. Altschul, M. S. Boguski, J. S. Liu, A. F. Neuwald, and J. C. Wootton, Science 262, 208 (1993).
37. T. D. Schneider, G. D. Stormo, L. Gold, and A. Ehrenfeucht, J. Mol. Biol. 188, 415 (1986).