-
2
-
-
84921981141
-
Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes
-
Davis-Richardson AG, Ardissone AN, Dias R, et al. Bacteroides dorei dominates gut microbiome prior to autoimmunity in Finnish children at high risk for type 1 diabetes. Front Microbiol 2014;5:678.
-
(2014)
Front Microbiol
, vol.5
, pp. 678
-
-
Davis-Richardson, A.G.1
Ardissone, A.N.2
Dias, R.3
-
3
-
-
84922941772
-
The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes
-
Kostic AD, Gevers D, Siljander H, et al. The dynamics of the human infant gut microbiome in development and in progression toward type 1 diabetes. Cell Host Microbe 2015;17:260-73.
-
(2015)
Cell Host Microbe
, vol.17
, pp. 260-273
-
-
Kostic, A.D.1
Gevers, D.2
Siljander, H.3
-
4
-
-
84931566443
-
A model for the role of gut bacteria in the development of autoimmunity for type 1 diabetes
-
Davis-Richardson AG, Triplett EW. A model for the role of gut bacteria in the development of autoimmunity for type 1 diabetes. Diabetologia 2015;58:1386-93.
-
(2015)
Diabetologia
, vol.58
, pp. 1386-1393
-
-
Davis-Richardson, A.G.1
Triplett, E.W.2
-
5
-
-
84938592759
-
On the role of gut bacteria and infant diet in the development of autoimmunity for type 1 diabetes
-
Hänninen AL, Toivonen RK. On the role of gut bacteria and infant diet in the development of autoimmunity for type 1 diabetes. Diabetologia 2015;58:2195-6.
-
(2015)
Diabetologia
, vol.58
, pp. 2195-2196
-
-
Hänninen, A.L.1
Toivonen, R.K.2
-
7
-
-
84964682615
-
Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans
-
Vatanen T, Kostic AD, d'Hennezel E, et al. Variation in microbiome LPS immunogenicity contributes to autoimmunity in humans. Cell 2016;165:842-53.
-
(2016)
Cell
, vol.165
, pp. 842-853
-
-
Vatanen, T.1
Kostic, A.D.2
D'Hennezel, E.3
-
8
-
-
84884505361
-
Toll-like receptor 4 deficiency accelerates the development of insulin-deficient diabetes in non-obese diabetic mice
-
Gülden E, Ihira M, Ohashi A, et al. Toll-like receptor 4 deficiency accelerates the development of insulin-deficient diabetes in non-obese diabetic mice. PLoS One 2013;8:e75385.
-
(2013)
PLoS One
, vol.8
, pp. e75385
-
-
Gülden, E.1
Ihira, M.2
Ohashi, A.3
-
9
-
-
84955197644
-
Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice
-
Brown K, Godovannyi A, Ma C, et al. Prolonged antibiotic treatment induces a diabetogenic intestinal microbiome that accelerates diabetes in NOD mice. Isme J 2016;10:321-32.
-
(2016)
Isme J
, vol.10
, pp. 321-332
-
-
Brown, K.1
Godovannyi, A.2
Ma, C.3
-
10
-
-
58249092189
-
Getting the bugs out of the immune system: Do bacterial microbiota "fix" intestinal T cell responses?
-
Chow J, Mazmanian SK. Getting the bugs out of the immune system: Do bacterial microbiota "fix" intestinal T cell responses? Cell Host Microbe 2009;5:8-12.
-
(2009)
Cell Host Microbe
, vol.5
, pp. 8-12
-
-
Chow, J.1
Mazmanian, S.K.2
-
11
-
-
84907563983
-
Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences
-
Cox LM, Yamanishi S, Sohn J, et al. Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences. Cell 2014;158:705-21.
-
(2014)
Cell
, vol.158
, pp. 705-721
-
-
Cox, L.M.1
Yamanishi, S.2
Sohn, J.3
-
12
-
-
84861980130
-
Interactions between the microbiota and the immune system
-
Hooper LV, Littman DR, Macpherson AJ. Interactions between the microbiota and the immune system. Science 2012;336:1268-73.
-
(2012)
Science
, vol.336
, pp. 1268-1273
-
-
Hooper, L.V.1
Littman, D.R.2
Macpherson, A.J.3
-
13
-
-
84881477044
-
Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota
-
Atarashi K, Tanoue T, Oshima K, et al. Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota. Nature 2013;500:232-6.
-
(2013)
Nature
, vol.500
, pp. 232-236
-
-
Atarashi, K.1
Tanoue, T.2
Oshima, K.3
-
14
-
-
85027947787
-
Induction of colonic regulatory T cells by indigenous Clostridium species
-
Atarashi K, Tanoue T, Shima T, et al. Induction of colonic regulatory T cells by indigenous Clostridium species. Science 2011;331:337-41.
-
(2011)
Science
, vol.331
, pp. 337-341
-
-
Atarashi, K.1
Tanoue, T.2
Shima, T.3
-
15
-
-
84943639694
-
Th17 cell induction by adhesion of microbes to intestinal epithelial cells
-
Atarashi K, Tanoue T, Ando M, et al. Th17 cell induction by adhesion of microbes to intestinal epithelial cells. Cell 2015;163:367-80.
-
(2015)
Cell
, vol.163
, pp. 367-380
-
-
Atarashi, K.1
Tanoue, T.2
Ando, M.3
-
16
-
-
53349173070
-
Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine
-
Ivanov II, Frutos RL, Manel N, et al. Specific microbiota direct the differentiation of IL-17-producing T-helper cells in the mucosa of the small intestine. Cell Host Microbe 2008;4:337-49.
-
(2008)
Cell Host Microbe
, vol.4
, pp. 337-349
-
-
Ivanov, I.I.1
Frutos, R.L.2
Manel, N.3
-
17
-
-
44449106055
-
A microbial symbiosis factor prevents intestinal inflammatory disease
-
Mazmanian SK, Round JL, Kasper DL. A microbial symbiosis factor prevents intestinal inflammatory disease. Nature 2008;453:620-5.
-
(2008)
Nature
, vol.453
, pp. 620-625
-
-
Mazmanian, S.K.1
Round, J.L.2
Kasper, D.L.3
-
18
-
-
77954738601
-
Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota
-
Round JL, Mazmanian SK. Inducible Foxp3+ regulatory T-cell development by a commensal bacterium of the intestinal microbiota. Proc Natl Acad Sci U S A 2010;107:12204-9.
-
(2010)
Proc Natl Acad Sci U S A
, vol.107
, pp. 12204-12209
-
-
Round, J.L.1
Mazmanian, S.K.2
-
19
-
-
5444248493
-
Akkermansia muciniphila gen. Nov., sp. Nov., a human intestinal mucin-degrading bacterium
-
Derrien M, Vaughan EE, Plugge CM, et al. Akkermansia muciniphila gen. nov., sp. nov., a human intestinal mucin-degrading bacterium. Int J Syst Evol Microbiol 2004;54(Pt 5):1469-76.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, Issue.PART 5
, pp. 1469-1476
-
-
Derrien, M.1
Vaughan, E.E.2
Plugge, C.M.3
-
20
-
-
84897960120
-
An increase in the Akkermansia spp. Population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice
-
Shin NR, Lee JC, Lee HY, et al. An increase in the Akkermansia spp. population induced by metformin treatment improves glucose homeostasis in diet-induced obese mice. Gut 2014;63:727-35.
-
(2014)
Gut
, vol.63
, pp. 727-735
-
-
Shin, N.R.1
Lee, J.C.2
Lee, H.Y.3
-
21
-
-
80054722148
-
Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes
-
Brown CT, Davis-Richardson AG, Giongo A, et al. Gut microbiome metagenomics analysis suggests a functional model for the development of autoimmunity for type 1 diabetes. PLoS One 2011;6:e25792.
-
(2011)
PLoS One
, vol.6
, pp. e25792
-
-
Brown, C.T.1
Davis-Richardson, A.G.2
Giongo, A.3
-
22
-
-
84904741913
-
Aberrant gut microbiota composition at the onset of type 1 diabetes in young children
-
de Goffau MC, Fuentes S, van den Bogert B, et al. Aberrant gut microbiota composition at the onset of type 1 diabetes in young children. Diabetologia 2014;57:1569-77.
-
(2014)
Diabetologia
, vol.57
, pp. 1569-1577
-
-
De Goffau, M.C.1
Fuentes, S.2
Van Den Bogert, B.3
-
23
-
-
84995910862
-
Towards a functional hypothesis relating anti-islet cell autoimmunity to the dietary impact on microbial communities and butyrate production
-
Endesfelder D, Engel M, Davis-Richardson AG, et al. Towards a functional hypothesis relating anti-islet cell autoimmunity to the dietary impact on microbial communities and butyrate production. Microbiome 2016;4:17.
-
(2016)
Microbiome
, vol.4
, pp. 17
-
-
Endesfelder, D.1
Engel, M.2
Davis-Richardson, A.G.3
-
24
-
-
83655210633
-
Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader akkermansia muciniphila
-
Derrien M, Van Baarlen P, Hooiveld G, et al. Modulation of mucosal immune response, tolerance, and proliferation in mice colonized by the mucin-degrader akkermansia muciniphila. Front Microbiol 2011;2:166.
-
(2011)
Front Microbiol
, vol.2
, pp. 166
-
-
Derrien, M.1
Van Baarlen, P.2
Hooiveld, G.3
-
25
-
-
84878465280
-
Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity
-
Everard A, Belzer C, Geurts L, et al. Cross-talk between Akkermansia muciniphila and intestinal epithelium controls diet-induced obesity. Proc Natl Acad Sci U S A 2013;110:9066-71.
-
(2013)
Proc Natl Acad Sci U S A
, vol.110
, pp. 9066-9071
-
-
Everard, A.1
Belzer, C.2
Geurts, L.3
-
26
-
-
84997701899
-
A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice
-
Plovier H, Everard A, Druart C, et al. A purified membrane protein from Akkermansia muciniphila or the pasteurized bacterium improves metabolism in obese and diabetic mice. Nat Med 2017;23:107-13.
-
(2017)
Nat Med
, vol.23
, pp. 107-113
-
-
Plovier, H.1
Everard, A.2
Druart, C.3
-
27
-
-
80054122238
-
The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine
-
Vaishnava S, Yamamoto M, Severson KM, et al. The antibacterial lectin RegIIIgamma promotes the spatial segregation of microbiota and host in the intestine. Science 2011;334:255-8.
-
(2011)
Science
, vol.334
, pp. 255-258
-
-
Vaishnava, S.1
Yamamoto, M.2
Severson, K.M.3
-
28
-
-
84885437087
-
ER stress transcription factor Xbp1 suppresses intestinal tumorigenesis and directs intestinal stem cells
-
Niederreiter L, Fritz TM, Adolph TE, et al. ER stress transcription factor Xbp1 suppresses intestinal tumorigenesis and directs intestinal stem cells. J Exp Med 2013;210:2041-56.
-
(2013)
J Exp Med
, vol.210
, pp. 2041-2056
-
-
Niederreiter, L.1
Fritz, T.M.2
Adolph, T.E.3
-
29
-
-
84975138819
-
Activation of plasmacytoid dendritic cells in colon-draining lymph nodes during citrobacter rodentium infection involves pathogensensing and inflammatory pathways distinct from conventional dendritic cells
-
Toivonen R, Kong L, Rasool O, et al. Activation of plasmacytoid dendritic cells in colon-draining lymph nodes during citrobacter rodentium infection involves pathogensensing and inflammatory pathways distinct from conventional dendritic cells. J Immunol 2016;196:4750-9.
-
(2016)
J Immunol
, vol.196
, pp. 4750-4759
-
-
Toivonen, R.1
Kong, L.2
Rasool, O.3
-
30
-
-
29144508394
-
Endocrine self and gut non-self intersect in the pancreatic lymph nodes
-
Turley SJ, Lee JW, Dutton-Swain N, et al. Endocrine self and gut non-self intersect in the pancreatic lymph nodes. Proc Natl Acad Sci U S A 2005;102:17729-33.
-
(2005)
Proc Natl Acad Sci U S A
, vol.102
, pp. 17729-17733
-
-
Turley, S.J.1
Lee, J.W.2
Dutton-Swain, N.3
-
31
-
-
0027166934
-
NOD mouse colonies around the world-recent facts and figures
-
Pozzilli P, Signore A, Williams AJ, et al. NOD mouse colonies around the world-recent facts and figures. Immunol Today 1993;14:193-6.
-
(1993)
Immunol Today
, vol.14
, pp. 193-196
-
-
Pozzilli, P.1
Signore, A.2
Williams, A.J.3
-
32
-
-
84874005935
-
Gut microbiota in children with type 1 diabetes differs from that in healthy children: A case-control study
-
Murri M, Leiva I, Gomez-Zumaquero JM, et al. Gut microbiota in children with type 1 diabetes differs from that in healthy children: A case-control study. BMC Med 2013;11:46.
-
(2013)
BMC Med
, vol.11
, pp. 46
-
-
Murri, M.1
Leiva, I.2
Gomez-Zumaquero, J.M.3
-
33
-
-
84928158800
-
Gut microbial markers are associated with diabetes onset, regulatory imbalance, and IFN-γ level in NOD mice
-
Krych Ł, Nielsen DS, Hansen AK, et al. Gut microbial markers are associated with diabetes onset, regulatory imbalance, and IFN-γ level in NOD mice. Gut Microbes 2015;6:101-9.
-
(2015)
Gut Microbes
, vol.6
, pp. 101-109
-
-
Krych, Ł.1
Nielsen, D.S.2
Hansen, A.K.3
-
34
-
-
84943606160
-
ConStrains identifies microbial strains in metagenomic datasets
-
Luo C, Knight R, Siljander H, et al. ConStrains identifies microbial strains in metagenomic datasets. Nat Biotechnol 2015;33:1045-52.
-
(2015)
Nat Biotechnol
, vol.33
, pp. 1045-1052
-
-
Luo, C.1
Knight, R.2
Siljander, H.3
-
35
-
-
84866386969
-
Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse
-
Hansen CH, Krych L, Nielsen DS, et al. Early life treatment with vancomycin propagates Akkermansia muciniphila and reduces diabetes incidence in the NOD mouse. Diabetologia 2012;55:2285-94.
-
(2012)
Diabetologia
, vol.55
, pp. 2285-2294
-
-
Ch, H.1
Krych, L.2
Nielsen, D.S.3
-
36
-
-
84863985588
-
Microbes inside-from diversity to function: The case of Akkermansia
-
Belzer C, de Vos WM. Microbes inside-from diversity to function: The case of Akkermansia. Isme J 2012;6:1449-58.
-
(2012)
Isme J
, vol.6
, pp. 1449-1458
-
-
Belzer, C.1
De Vos, W.M.2
-
37
-
-
79952294582
-
The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes
-
van Passel MW, Kant R, Zoetendal EG, et al. The genome of Akkermansia muciniphila, a dedicated intestinal mucin degrader, and its use in exploring intestinal metagenomes. PLoS One 2011;6:e16876.
-
(2011)
PLoS One
, vol.6
, pp. e16876
-
-
Van Passel, M.W.1
Kant, R.2
Zoetendal, E.G.3
-
38
-
-
78149283854
-
Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria
-
Png CW, Lindén SK, Gilshenan KS, et al. Mucolytic bacteria with increased prevalence in IBD mucosa augment in vitro utilization of mucin by other bacteria. Am J Gastroenterol 2010;105:2420-8.
-
(2010)
Am J Gastroenterol
, vol.105
, pp. 2420-2428
-
-
Png, C.W.1
Lindén, S.K.2
Gilshenan, K.S.3
-
39
-
-
77954672686
-
Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women
-
Santacruz A, Collado MC, García-Valdés L, et al. Gut microbiota composition is associated with body weight, weight gain and biochemical parameters in pregnant women. Br J Nutr 2010;104:83-92.
-
(2010)
Br J Nutr
, vol.104
, pp. 83-92
-
-
Santacruz, A.1
Collado, M.C.2
García-Valdés, L.3
-
40
-
-
60549086580
-
Human gut microbiota in obesity and after gastric bypass
-
Zhang H, DiBaise JK, Zuccolo A, et al. Human gut microbiota in obesity and after gastric bypass. Proc Natl Acad Sci U S A 2009;106:2365-70.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 2365-2370
-
-
Zhang, H.1
DiBaise, J.K.2
Zuccolo, A.3
-
41
-
-
78651254481
-
Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum
-
Swidsinski A, Dörffel Y, Loening-Baucke V, et al. Acute appendicitis is characterised by local invasion with Fusobacterium nucleatum/necrophorum. Gut 2011;60:34-40.
-
(2011)
Gut
, vol.60
, pp. 34-40
-
-
Swidsinski, A.1
Dörffel, Y.2
Loening-Baucke, V.3
-
42
-
-
77956652411
-
Mucin-bacterial interactions in the human oral cavity and digestive tract
-
Derrien M, van Passel MW, van de Bovenkamp JH, et al. Mucin-bacterial interactions in the human oral cavity and digestive tract. Gut Microbes 2010;1:254-68.
-
(2010)
Gut Microbes
, vol.1
, pp. 254-268
-
-
Derrien, M.1
Van Passel, M.W.2
Van De Bovenkamp, J.H.3
-
43
-
-
85040147937
-
Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors
-
eaan3706
-
Routy B, Le Chatelier E, Derosa L, et al. Gut microbiome influences efficacy of PD-1-based immunotherapy against epithelial tumors. Science 2017:eaan3706.
-
(2017)
Science
-
-
Routy, B.1
Le Chatelier, E.2
Derosa, L.3
-
44
-
-
47949120118
-
Clinical use of E. Coli Nissle 1917 in inflammatory bowel disease
-
Schultz M. Clinical use of E. coli Nissle 1917 in inflammatory bowel disease. Inflamm Bowel Dis 2008;14:1012-8.
-
(2008)
Inflamm Bowel Dis
, vol.14
, pp. 1012-1018
-
-
Schultz, M.1
-
45
-
-
79953193748
-
Inhibition of type 1 diabetes correlated to a Lactobacillus johnsonii N6.2-mediated Th17 bias
-
Lau K, Benitez P, Ardissone A, et al. Inhibition of type 1 diabetes correlated to a Lactobacillus johnsonii N6.2-mediated Th17 bias. J Immunol 2011;186:3538-46.
-
(2011)
J Immunol
, vol.186
, pp. 3538-3546
-
-
Lau, K.1
Benitez, P.2
Ardissone, A.3
-
46
-
-
0030801225
-
Prevention of onset in an insulin-dependent diabetes mellitus model, NOD mice, by oral feeding of Lactobacillus casei
-
Matsuzaki T, Nagata Y, Kado S, et al. Prevention of onset in an insulin-dependent diabetes mellitus model, NOD mice, by oral feeding of Lactobacillus casei. APMIS 1997;105:643-9.
-
(1997)
APMIS
, vol.105
, pp. 643-649
-
-
Matsuzaki, T.1
Nagata, Y.2
Kado, S.3
-
47
-
-
77953302950
-
Inflammatory tendencies and overproduction of IL-17 in the colon of young NOD mice are counteracted with diet change
-
Alam C, Valkonen S, Palagani V, et al. Inflammatory tendencies and overproduction of IL-17 in the colon of young NOD mice are counteracted with diet change. Diabetes 2010;59:2237-46.
-
(2010)
Diabetes
, vol.59
, pp. 2237-2246
-
-
Alam, C.1
Valkonen, S.2
Palagani, V.3
-
48
-
-
77949272755
-
Gut barrier disruption by an enteric bacterial pathogen accelerates insulitis in NOD mice
-
Lee AS, Gibson DL, Zhang Y, et al. Gut barrier disruption by an enteric bacterial pathogen accelerates insulitis in NOD mice. Diabetologia 2010;53:741-8.
-
(2010)
Diabetologia
, vol.53
, pp. 741-748
-
-
Lee, A.S.1
Gibson, D.L.2
Zhang, Y.3
-
49
-
-
84937210412
-
Fermentable fibres condition colon microbiota and promote diabetogenesis in NOD mice
-
Toivonen RK, Emani R, Munukka E, et al. Fermentable fibres condition colon microbiota and promote diabetogenesis in NOD mice. Diabetologia 2014;57:2183-92.
-
(2014)
Diabetologia
, vol.57
, pp. 2183-2192
-
-
Toivonen, R.K.1
Emani, R.2
Munukka, E.3
-
50
-
-
1342302624
-
The effect of innate immunity on autoimmune diabetes and the expression of Toll-like receptors on pancreatic islets
-
Wen L, Peng J, Li Z, et al. The effect of innate immunity on autoimmune diabetes and the expression of Toll-like receptors on pancreatic islets. J Immunol 2004;172:3173-80.
-
(2004)
J Immunol
, vol.172
, pp. 3173-3180
-
-
Wen, L.1
Peng, J.2
Li, Z.3
-
51
-
-
85014020112
-
Consistent prebiotic effect on gut microbiota with altered FODMAP intake in patients with Crohn's disease: A randomised, controlled cross-over trial of well-defined diets
-
Halmos EP, Christophersen CT, Bird AR, et al. Consistent prebiotic effect on gut microbiota with altered FODMAP intake in patients with Crohn's disease: A randomised, controlled cross-over trial of well-defined diets. Clin Transl Gastroenterol 2016;7:e164.
-
(2016)
Clin Transl Gastroenterol
, vol.7
, pp. e164
-
-
Halmos, E.P.1
Christophersen, C.T.2
Bird, A.R.3
-
52
-
-
84857596874
-
Using QIIME to analyze 16S rRNA gene sequences from microbial communities
-
Chapter 10: Unit 10.7
-
Kuczynski J, Stombaugh J, Walters WA, et al. Using QIIME to analyze 16S rRNA gene sequences from microbial communities. Curr Protoc Bioinformatics 2011;Chapter 10:Unit 10.7.
-
(2011)
Curr Protoc Bioinformatics
-
-
Kuczynski, J.1
Stombaugh, J.2
Walters, W.A.3
-
53
-
-
84924301510
-
Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome
-
Chassaing B, Koren O, Goodrich JK, et al. Dietary emulsifiers impact the mouse gut microbiota promoting colitis and metabolic syndrome. Nature 2015;519:92-6.
-
(2015)
Nature
, vol.519
, pp. 92-96
-
-
Chassaing, B.1
Koren, O.2
Goodrich, J.K.3
|