Genetic diversity of reintroduced tree populations in restoration plantations of the Brazilian Atlantic Forest

Restoration Ecology

Volumn 26, Issue 4, 2018, Pages 694-701

  Zucchi, Maria I ^a   Sujii, Patricia S ^b,e   Mori, Gustavo M ^a,f   Viana, João P G ^b   Grando, Carolina ^b   Silvestre, Ellida de Aguiar ^b   Schwarcz, Kaiser D ^b   Macrini, Camila M ^a   Bajay, Miklos M ^c   Araújo, Fabiano L ^d   Siqueira, Marcos V B M ^a   Alves Pereira, Alessandro ^c   de Souza, Anete P ^b   Pinheiro, José B ^c   Rodrigues, Ricardo R ^c   Brancalion, Pedro H S ^c  

^a AGÊNCIA PAULISTA DE TECNOLOGIA DOS AGRONEGÓCIOS   (Brazil)

^b UNIVERSITY OF CAMPINAS   (Brazil)

^c UNIVERSITY OF SÃO PAULO   (Brazil)

^d INSTITUTO AGRONÔMICO   (Brazil)

^e Faculty of Politics and International Relations   (Brazil)

^f SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

conservation genetics; population genetics; restoration genetics; restoration monitoring; restoration plantations; tropical forest restoration

Indexed keywords

CONSERVATION GENETICS; ENVIRONMENTAL MONITORING; GENETIC VARIATION; PLANTATION FORESTRY; POPULATION GENETICS; REINTRODUCTION; RESTORATION ECOLOGY; TROPICAL FOREST;

ATLANTIC FOREST; BRAZIL;

EID: 85049807423     PISSN: 10612971     EISSN: 1526100X     Source Type: Journal    
DOI: 10.1111/rec.12620     Document Type: Article

References (42)

1. Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J (2008) Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Molecular Ecology 17:5177–5188
2. Banks-Leite C, Pardini R, Tambosi LR, Pearse WD, Bueno AA, Bruscagin RT, et al. (2014) Using ecological thresholds to evaluate the costs and benefits of set-asides in a biodiversity hotspot. Science 345:1041–1045
3. Barreto TE (2009) Dynamics of 10.24 ha of a section of Seasonal Semideciduous Forest, Gália-Alvilândia, SP – Brazil. MSc Thesis. Universidade Estadual de Campinas, Campinas, São Paulo, Brazil. http://www.lerf.eco.br/img/publicacoes/2009_12%20Din%C3%A2mica%20de%2010,24ha%20de%20um%20trecho%20de%20floresta%20estacional%20semidecidual,%20G%C3%A1lia%20-%20Alvil%C3%A2ndia,%20SP,%20Brasil.pdf
4. Benayas JMR, Newton AC, Diaz A, Bullock JM (2009) Enhancement of biodiversity and ecosystem services by ecological restoration: a meta-analysis. Science 325:1121–1124
5. Brancalion PH, Viani RA, Aronson J, Rodrigues RR, Nave AG (2012) Improving planting stocks for the Brazilian Atlantic Forest restoration through community-based seed harvesting strategies. Restoration Ecology 20:704–711
6. Breed MF, Stead MG, Ottewell KM, Gardner MG, Lowe AJ (2013) Which provenance and where? Seed sourcing strategies for revegetation in a changing environment. Conservation Genetics 14:1–10
7. Broadhurst LM, North T, Young AG (2006) Should we be more critical of remnant seed sources being used for revegetation? Ecological Management & Restoration 7:211–2017
8. Bullock JM, Aronson J, Newton AC, Pywell RF, Rey-Benayas JM (2011) Restoration of ecosystem services and biodiversity: conflicts and opportunities. Trends in Ecology & Evolution 26:541–549
9. Cavallari MM, Billot C, Bouvet JM, Favreau B, Zucchi MI, Palmieri DA, Gimenes MA (2008) Isolation and characterization of microsatellite markers for Casearia sylvestris Sw.(Salicaceae), a neotropical medicinal tree. Molecular Ecology Resources 8:802–804
10. Chazdon RL, Brancalion PH, Lamb D, Laestadius L, Calmon M, Kumar C (2015) A policy-driven knowledge agenda for global forest and landscape restoration. Conservation Letters 10:125–132
11. Cruz Neto O, Aguiar AV, Twyford AD, Neaves LE, Pennington RT, Lopes AV (2014) Genetic and ecological outcomes of Inga vera subsp. affinis (Leguminosae) tree plantations in a fragmented tropical landscape. PLoS One 9:e99903
12. Duminil J, Fineschi S, Hampe A, Jordano P, Salvini D, Vendramin GG, Petit RJ (2007) Can population genetic structure be predicted from life-history traits? American Naturalist 169:662–672
13. Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software STRUCTURE: a simulation study. Molecular Ecology 14:2611–2620
14. Ferraz SF, Ferraz K, Cassiano CC, Brancalion PHS, Luz DTA, Azevedo TN, Tambosi LR, Metzger JP (2014) How good are tropical forest patches for ecosystem services provisioning? Landscape Ecology 29:187–200
15. Grando C, Bajay MM, Bajay SK, Schwarcz KD, Campos JB, Brancalion PH, Pinheiro JB, Rodrigues RR, Souza AP, Zucchi MI (2015) Development and characterization of microsatellite markers for Piptadenia gonoacantha (Fabaceae). Applications in Plant Sciences 3:1400107
16. Hobbs RJ, Higgs E, Harris JA (2009) Novel ecosystems: implication for conservation and restoration. Trends in Ecology and Evolution 24:599–605
17. Keenan K, McGinnity P, Cross TF, Crozier WW, Prodöhl PA (2013) diveRsity: an R package for the estimation and exploration of population genetics parameters and their associated errors. Methods in Ecology and Evolution 4:782–788
18. Mijangos JL, Pacioni C, Spencer BSP, Craig MD (2015) Contribution of genetics to ecological restoration. Molecular Ecology 24:22–37
19. Moreno-Mateos D, Barbier EB, Jones PC, Jones HP, Aronson J, López-López JA, McCrackin ML, Meli P, Montoya DB (2017) Anthropogenic ecosystem disturbance and the recovery debt. Nature Communications 8:14163
20. Murcia C, Guariguata MR, Andrade A, Andrade GI, Aronson J, Escobar EM, Etter A, Moreno FH, Ramírez W, Montes E (2016) Challenges and prospects for scaling-up ecological restoration to meet international commitments: Colombia as a case study. Conservation Letters 9:213–220
21. Nogueira JC (2010) Reflorestamento misto com essências nativas: a mata ciliar. Instituto Florestal, São Paulo, Brazil
22. Paquette SR (2012) PopGenKit: useful functions for (batch) file conversion and data resampling in microsatellite datasets. R package version 1.0
23. Possingham HP, Bode M, Klein CJ (2015) Optimal conservation outcomes require both restoration and protection. PLoS Biology 13:e1002052–e1002052
24. Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155:945–959
25. Reed DH, Frankham R (2003) Correlation between fitness and genetic diversity. Conservation Biology 17:230–237
26. Reid JL, Holl KD, Zahawi RA (2015) Seed dispersal limitations shift over time in tropical forest restoration. Ecological Applications 25:1072–1082
27. Ribeiro MC, Metzger JP, Martensen AC, Ponzoni FJ, Hirota MM (2009) The Brazilian Atlantic Forest: how much is left, and how is the remaining forest distributed? Implications for conservation. Biological Conservation 142:1141–1153
28. Ritchie AL, Krauss SL (2012) A genetic assessment of ecological restoration success in Banksia attenuata. Restoration Ecology 20:441–449
29. Rodrigues RR, Lima RAF, Gandolfi S, Nave AG (2009) On the restoration of high diversity forests: 30 years of experiences in the Brazilian Atlantic Forest. Biological Conservation 142:1242–1251
30. Schwarcz KD (2014) Viabilidade genética de restaurações florestais: diversidade eestrutura genética em Myroxylon peruiferum. PhD dissertation. University of Campinas, Campinas, São Paulo, Brazil. http://taurus.unicamp.br/bitstream/REPOSIP/317091/1/Schwarcz,%20Kaiser%20Dias_D.pdf
31. Schwarcz KD, Bajay MM, Macrini CM, Salazar VL, Souza AP, Pinheiro JB, Brancalion PH, Rodrigues RR, Zucchi MI (2014) Microsatellite markers for the Cabreuva tree, Myroxylon peruiferum (Fabaceae), an endangered medicinal species from the Brazilian Atlantic Forest. Genetics and Molecular Research 13:6920–6925
32. Sezen UU, Chazdon RL, Holsinger KE (2007) Multigenerational genetic analysis of tropical secondary regeneration in a canopy palm. Ecology 88:3065–3075
33. Sgrò CM, Lowe AJ, Hoffman AA (2011) Building evolutionary resilience for conserving biodiveristy under climate change. Evolutionary Applications 4:326–337
34. Shoo LP, Freebody K, Kanowski J, Catterall CP (2016) Slow recovery of tropical old-field rainforest regrowth and the value and limitations of active restoration. Conservation Biology 30:121–132
35. Slik JWF, Arroyo-Rodriguez V, Aiba S, Alvarez-Loayza P, Alves LF, Ashton P, et al. (2015) An estimate of the number of tropical tree species. Proceedings of the National Academy of Sciences of the United States of America 112:7472–7477
36. Sloan S, Jenkins CN, Joppa LN, Gaveau DL, Laurance WF (2014) Remaining natural vegetation in the global biodiversity hotspots. Biological Conservation 177:12–24
37. Suding K, Higgs E, Palmer M, Callicott JB, Anderson CB, Baker M, et al. (2015) Committing to ecological restoration. Science 348:638–640
38. Sujii PS, Schwarcz KD, Grando C, do Valle GE, de Campos JB, Pinheiro JB, Zucchi MI (2015) Isolation and characterisation of microsatellite markers for Centrolobium tomentosum (Fabaceae), a neotropical tree species widely used for Atlantic rainforest restoration. Conservation Genetics Resources 7:733–734
39. Sujii PS, Schwarcz KD, Grando C, de Aguiar Silvestre E, Mori GM, Brancalion PH, Zucchi MI (2017) Recovery of genetic diversity levels of a Neotropical tree in Atlantic Forest restoration plantations. Biological Conservation 211:110–116
40. Tambosi LR, Martensen AC, Ribeiro MC, Metzger JP (2014) A framework to optimize biodiversity restoration efforts based on landscape cover and connectivity. Restoration Ecology 22:169–177
41. Thomas E, Jalonen R, Boshier D, Gallo L, Cabers S, Bordács S, Smith P, Bozzano M (2014) Genetic considerations in ecosystem restoration using native tree species. Forest Ecology and Management 333:66–75
42. Williams AV, Nevill PG, Krauss SL (2014) Next generation restoration genetics: applications and opportunities. Trends in Plant Science 19:529–537