Genetic and ecological outcomes of Inga vera subsp. affinis (leguminosae) tree plantations in a fragmented tropical landscape

PLoS ONE

Volumn 9, Issue 6, 2014, Pages

  Neto, Oswaldo Cruz ^a   Aguiar, Antonio V ^b   Twyford, Alex D ^c   Neaves, Linda E ^c   Toby Pennington, R ^c   Lopes, Ariadna V ^a  

^a FEDERAL UNIVERSITY OF PERNAMBUCO   (Brazil)

^b UNIVERSITY OF FLORIDA   (United States)

^c ROYAL BOTANIC GARDEN EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BRAZIL; CONTROLLED STUDY; GENE FLOW; GENE FREQUENCY; GENETIC ANALYSIS; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; HABITAT FRAGMENTATION; HABITAT STRUCTURE; INGA VERA AFFINIS; LEGUME; MICROSATELLITE MARKER; NONHUMAN; OUTCROSSING; PLANT BREEDING; PLANT GENETICS; PLANTATION; POPULATION GENETIC STRUCTURE; SPECIES RICHNESS;

EID: 84903130576     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0099903     Document Type: Article

References (46)

1. Aguilar R, Quesada M, Ashworth L, Herrerias-Diego Y, Lobo J (2008) Genetic consequences of habitat fragmentation in plant populations: susceptible signals in plant traits and methodological approaches. Mol Ecol 17(24): 5177-5188.
2. Llorens TM, Byrne M, Yahtes CJ, Nistelberger HM, Coates DJ (2012) Evaluating the influence of different aspect of habitat fragmentation on mating patterns and pollen dispersal in the bird-pollinated Banskia sphaerocarpa var. caesia. Mol Ecol 21: 314-328.
3. Lobo J, Solís S, Fuchs EJ, Quesada M (2013) Individual and temporal variation in outcrossing rates and pollen flow patterns in Ceiba pentandra (Malvaceae: Bombacoidea). Biotropica 45(2): 185-194.
4. Navascués M, Emerson BC (2007) Natural recovery of genetic conservation by geneflow in reforested areas of the endemic Canary Island pine, Pinus canariensis. Forest Ecol Manag 244: 122-128. (Pubitemid 46734627)
5. Dawson IK, Hollingsworth PM, Doyle JJ, Kresovich S, Weber JC, et al. (2007) Origins and genetic conservation of tropical trees in agroforestry systems: a case study from Peruvian Amazon. Conserv Genet 9: 361-372. (Pubitemid 351660112)
6. Rodrigues RR, Lima RAF, Gandolfi S, Nave AG (2009) On the restoration of high diversity forests: 30 years of experience in the Brazilian Atlantic Forest. Biol Conserv 142: 1241-1251.
7. Wright SJ, Muller-Landau HC (2006) The future of tropical forest species. Biotropica 38: 287-301.
8. Morellato LPC, Haddad CFB (2000) The Brazilian Atlantic Forest. Biotropica 32: 786-792.
9. Ribeiro MC, Metzger JP, Martensen AC, Ponzoni FJ, Hirota MM (2009) The Brazilian Atlantic forest: How much is left, and how is the remaining forest distributed? Implications for conservation. Biol Conserv 142: 1141-1153.
10. Forzza RC, Baumgratz JFA, Bicudo CEM, Carvalho-Junior AA, Costa A, et al. (2010) Catálogo de plantas e fungos do Brasil. Rio de Janeiro: Instituto Jardim Botânico do Rio de Janeiro. 875 p.
11. Girão LC, Lopes AV, Tabarelli M, Bruna EM (2007) Changes in tree reproductive traits reduce functional diversity in a fragmented Atlantic forest landscape. PLoS ONE 2: e908.
12. Aguilar R, Ashworth L, Galetto L, Aizen MA (2006) Plant reproductive susceptibility to habitat fragmentation: review and synthesis through a meta analysis. Ecol Lett 9: 968-980. (Pubitemid 44167974)
13. Kettle CJ, Hollingsworth PM, Affré TJ, Moran B, Ennos RA (2007) Identifying the early genetic consequences of habitat degradation in a highly threatened tropical conifer, Araucaria nemorosa Laubenfels. Mol Ecol 16: 3581-3591. (Pubitemid 47383109)
14. Lopes AV, Girão LC, Santos BA, Peres CA, Tabarelli M (2009) Long-term erosion of tree reproductive trait diversity in edge-dominated Atlantic forest fragments. Biol Conserv 142: 1154-1165.
15. Steinitz O, Robledo-Arnuncio JJ, Nathan R (2012) Effects of Forest plantations on the genetic composition of conspecific native Aleppo pine populations. Mol Ecol 21: 300-313.
16. Alves-Costa CP, Lôbo D, Leão T, Brancalion PHS, Nave AG et al. (2008) Implementando reflorestamentos com alta diversidade na Zona da Mata Nordestina: Guia Prático. Recife: J. Luiz Vasconcelos.
17. Lengkeek AG, Jaenicke H, Dawson IK (2004) Genetic bottlenecks in agroforestry systems: results of tree nursery surveys in East Africa. Agroforest Syst 63: 149-155. (Pubitemid 40876413)
18. Hollingsworth PM, Dawson IK, Goodall-Copestake P, Richardson JE, Weber JC, et al. (2005) Do farmers reduce genetic diversity when they domesticate tropical trees? A case study from Amazonia. Mol Ecol 14: 497-501. (Pubitemid 40210678)
19. Lengkeek AG, Mwangi AM, Agufa CAC, Ahenda JO, Dawson IK (2006) Comparing genetic diversity in agroforestry systems with natural forest: a case study of the important timber tree Vitex fischeri in central Kenya. Agroforest Syst 67: 293-300. (Pubitemid 44306136)
20. Pennington TD (1997) The genus Inga. Royal Botanic Gardens, Kew.
21. Cruz-Neto O, Machado IC, Lopes AV (2007) Ecologia da polinizaç ão de Inga striata (Benth.) (Leguminosae-Mimosoideae) em um remanescente de Mata Atlântica no Nordeste do Brasil. Rev Bras Biociênc 5: 570-572.
22. Cruz-Neto O, Machado IC, Duarte JA, Lopes AV (2011) Synchronous phenology of hawkmoths (Sphingidae) and Inga species (Fabaceae-Mimosoideae): implications for the restoration of the Atlantic forest of northeastern Brazil. Biodivers Conserv 20: 751-765.
23. Ferreira ME, Grattapaglia D (1998) Protocolos: Extração de DNA genômico total de plantas, In: Ferreira ME, Grattapaglia D, editors. Introdução ao uso de marcadores moleculares em análise genética. 2nd edition. Embrapa Cenargen, Brasília, pp. 121-138.
24. Dayanandan S, Bawa KS, Kesseli R (1997) Conservation of microsatellites among tropical trees (Leguminosae). Am J Bot 84: 1658-1663. (Pubitemid 28029252)
25. Amos W, Hoffman JI, Frodsham A, Zhang L, Best S, et al. (2007) Automated binning of microsatellite alleles: problems and solutions. Mol Ecol Notes 7: 10-14. (Pubitemid 46046571)
26. Goudet J (2001) FSTAT, a Program to Estimate and Test Gene Diversities and Fixation Indices, Version 2.9.3.2. Available: http://www2.unil.ch/izea/ softwares/fstat.html. Accessed 2012 Jan 16.
27. Van-Oosterhout C, Hutchinson WF, Wills DPM, Shipley P (2004) Microchecker: software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538. (Pubitemid 39147523)
28. Chapius MP, Estoup A (2007) Microsatellite null alleles and estimation of population differentiation. Mol Biol Evol 24: 621-631.
29. El Mousadik A, Petit RJ (1996) High level of genetic differentiation for allelic richness among populations of the argan tree [Argania spinosa (L) Skeels] endemic to Morocco. Theor Appl Genet 92: 832-839. (Pubitemid 26270161)
30. Nei M (1987) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89: 583-590.
31. Kalinowski ST (2005) HP-RARE 1.0: a computer program for performing rarefaction on measures of allelic richness. Mol Ecol Notes 5: 187-189.
32. Weir BS, Cockerham CC (1984) Estimating F-statistics for the analysis of population structure. Evolution 38: 1358-1370. (Pubitemid 16277759)
33. Koelling VA, Monhahan PJ, Kelly JK (2012) A Bayesian method for the joint estimation of outcrossing rate and inbreeding depression. Heredity 109: 393-400.
34. Corander J, Marttinen P, Sirén J, Tang J (2008) Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinf 9: 539.
35. Koptur S (1984) Outcrossing and pollinator limitation of fruit set: Breeding systems of neotropical Inga trees (Fabaceae: Mimosoideae). Evolution 38: 1130-1143.
36. Cruden RW (1977) Pollen-Ovule ratios: A conservative indicator of breeding systems in flowering plants. Evolution 31: 32-46.
37. Elmore LW, Miller DA, Villella FJ (2004) Foraging area size and habitat use by red bats (Lausirus borealis) in an intensively managed pine landscape in Missippi. Am Midl Nat 153: 405-417. (Pubitemid 40572862)
38. Kevan P (1999) Pollinators as bioindicators of the state of the environment: species activity and diversity. Agric Ecosyst Environ 74:373-393
39. Kitching IJ, Cadiou JM (2000) Hawkmoths of the world-an annotated and illustrated revisionary checklist(Lepidoptera: Sphingidae). Cornell University Press, New York.
40. Silva JMC, Tabarelli M (2000) Tree species impoverishment and the future flora of the Atlantic Forest of northeast Brazil. Nature 404: 72-73.
41. Dixon KW (2009) Pollination and restoration. Science 325: 571-572.
42. Olesen JM, Jordano P (2002) Geographic patterns in plant-pollinator mutualistic networks. Ecology 83: 2416-2424. (Pubitemid 36524728)
43. Amorim FW, Galetto L, Sazima M (2013) Beyond the pollination syndrome: Nectar ecology and the role of diurnal and nocturnal pollinators in the reproductive success of Inga sessilis (Fabaceae). Plant Biol 15: 317-327.
44. Koptur S (1983) Flowering phenology and floral biology of Inga (Fabaceae - Mimosoideae). Syst Bot 8: 354-368.
45. Hodges SA (1995) The influence of nectar production on hawkmoth behaviour, self pollination and seed production in Mirabilis multiflora (Nyctaginaceae). Am J Bot 82: 197-204.
46. Klinkhamer PGL, De-Jong T, Linnebank LA (2001) Small-scale patterns determine ecological relationships: an experimental example using nectar production rates. Ecol Lett 4: 559-567. (Pubitemid 33105369)