-
1
-
-
84946081339
-
OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders
-
Amberger JS, Bocchini CA, Schiettecatte F, Scott AF, Hamosh A. 2015. OMIM.org: Online Mendelian Inheritance in Man (OMIM®), an online catalog of human genes and genetic disorders. Nucleic Acids Res 43:D789-D798.
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D789-D798
-
-
Amberger, J.S.1
Bocchini, C.A.2
Schiettecatte, F.3
Scott, A.F.4
Hamosh, A.5
-
2
-
-
0034069495
-
Gene ontology: tool for the unification of biology
-
Ashburner M, Ball CA, Blake JA, Botstein D, Butler H, Cherry JM, Davis AP, Dolinski K, Dwight SS, Eppig JT, Harris MA, Hill DP, et al. 2000. Gene ontology: tool for the unification of biology. Nat Genet 25:25-29.
-
(2000)
Nat Genet
, vol.25
, pp. 25-29
-
-
Ashburner, M.1
Ball, C.A.2
Blake, J.A.3
Botstein, D.4
Butler, H.5
Cherry, J.M.6
Davis, A.P.7
Dolinski, K.8
Dwight, S.S.9
Eppig, J.T.10
Harris, M.A.11
Hill, D.P.12
-
3
-
-
84867302795
-
Bayesian ontology querying for accurate and noise-tolerant semantic searches
-
Bauer S, Köhler S, Schulz MH, Robinson PN. 2012. Bayesian ontology querying for accurate and noise-tolerant semantic searches. Bioinformatics 28(19):2502-2508.
-
(2012)
Bioinformatics
, vol.28
, Issue.19
, pp. 2502-2508
-
-
Bauer, S.1
Köhler, S.2
Schulz, M.H.3
Robinson, P.N.4
-
4
-
-
84902173195
-
Forge Canada Consortium: outcomes of a 2-year national rare-disease gene-discovery project
-
Beaulieu CL, Majewski J, Schwartzentruber J, Samuels ME, Fernandez BA, Bernier FP, Brudno M, Knoppers B, Marcadier J, Dyment D, Adam S, Dennis E, et al. 2014. Forge Canada Consortium: outcomes of a 2-year national rare-disease gene-discovery project. Am J Hum Genet 94:809-817.
-
(2014)
Am J Hum Genet
, vol.94
, pp. 809-817
-
-
Beaulieu, C.L.1
Majewski, J.2
Schwartzentruber, J.3
Samuels, M.E.4
Fernandez, B.A.5
Bernier, F.P.6
Brudno, M.7
Knoppers, B.8
Marcadier, J.9
Dyment, D.10
Adam, S.11
Dennis, E.12
-
5
-
-
84941878915
-
Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency
-
In preparation.
-
Bone WP, Washington NL, Buske OJ, Adams DR, Davis J, Draper D, Flynn ED, Girdea M, Godfrey R, Golas G, Groden C, Jacobsen J, et al. 2015. Computational evaluation of exome sequence data using human and model organism phenotypes improves diagnostic efficiency. In preparation.
-
(2015)
-
-
Bone, W.P.1
Washington, N.L.2
Buske, O.J.3
Adams, D.R.4
Davis, J.5
Draper, D.6
Flynn, E.D.7
Girdea, M.8
Godfrey, R.9
Golas, G.10
Groden, C.11
Jacobsen, J.12
-
6
-
-
84884416457
-
Rare-disease genetics in the era of next-generation sequencing: discovery to translation
-
Boycott KM, Vanstone MR, Bulman DE, MacKenzie AE. 2013. Rare-disease genetics in the era of next-generation sequencing: discovery to translation. Nat Rev Genet 14:681-691.
-
(2013)
Nat Rev Genet
, vol.14
, pp. 681-691
-
-
Boycott, K.M.1
Vanstone, M.R.2
Bulman, D.E.3
MacKenzie, A.E.4
-
7
-
-
84941879719
-
The matchmaker exchange API: Automating patient matching through the exchange of structured phenotypic and genotypic profiles
-
Buske OJ, Schiettecatte F, Hutton B, Dumitriu S, Misyura A, Huang L, Hartley T, Girdea M, Sobreira N, Mungall C, Brudno M. 2015. The matchmaker exchange API: Automating patient matching through the exchange of structured phenotypic and genotypic profiles. Hum Mutat 36:922-927.
-
(2015)
Hum Mutat
, vol.36
, pp. 922-927
-
-
Buske, O.J.1
Schiettecatte, F.2
Hutton, B.3
Dumitriu, S.4
Misyura, A.5
Huang, L.6
Hartley, T.7
Girdea, M.8
Sobreira, N.9
Mungall, C.10
Brudno, M.11
-
8
-
-
84864349644
-
MouseFinder: candidate disease genes from mouse phenotype data
-
Chen CK, Mungall CJ, Gkoutos GV, Doelken SC, Köhler S, Ruef BJ, Smith C, Westerfield M, Robinson PN, Lewis SE, Schofield PN, Smedley D. 2012. MouseFinder: candidate disease genes from mouse phenotype data. Hum Mutat 33:858-866.
-
(2012)
Hum Mutat
, vol.33
, pp. 858-866
-
-
Chen, C.K.1
Mungall, C.J.2
Gkoutos, G.V.3
Doelken, S.C.4
Köhler, S.5
Ruef, B.J.6
Smith, C.7
Westerfield, M.8
Robinson, P.N.9
Lewis, S.E.10
Schofield, P.N.11
Smedley, D.12
-
9
-
-
84941879602
-
Facilitating collaboration in rare genetic disorders through effective matchmaking in DECIPHER
-
Chatzimichali E, Brent S, Hutton B, Perrett D, Wright CF, Bevan AP, Hurles ME, Firth HV, Swaminathan GJ. 2015. Facilitating collaboration in rare genetic disorders through effective matchmaking in DECIPHER. Hum Mutat 36:941-949.
-
(2015)
Hum Mutat
, vol.36
, pp. 941-949
-
-
Chatzimichali, E.1
Brent, S.2
Hutton, B.3
Perrett, D.4
Wright, C.F.5
Bevan, A.P.6
Hurles, M.E.7
Firth, H.V.8
Swaminathan, G.J.9
-
10
-
-
84880508099
-
PhenoTips: patient phenotyping software for clinical and research use
-
Girdea M, Dumitriu S, Fiume M, Bowdin S, Boycott KM, Chénier S, Chitayat D, Faghfoury H, Meyn MS, Ray PN, So J, Stavropoulos DJ, Brudno M. 2013. PhenoTips: patient phenotyping software for clinical and research use. Hum Mutat 34:1057-1065.
-
(2013)
Hum Mutat
, vol.34
, pp. 1057-1065
-
-
Girdea, M.1
Dumitriu, S.2
Fiume, M.3
Bowdin, S.4
Boycott, K.M.5
Chénier, S.6
Chitayat, D.7
Faghfoury, H.8
Meyn, M.S.9
Ray, P.N.10
So, J.11
Stavropoulos, D.J.12
Brudno, M.13
-
11
-
-
84925944121
-
GeneYenta: a phenotypeBased rare disease case matching tool based on online dating algorithms for the acceleration of exome interpretation
-
Gottlieb MM, Arenillas DJ, Maithripala S, Maurer ZD, TarailoGraovac M, Armstrong L, Patel M, Karnebeek C, Wasserman WW. 2015. GeneYenta: a phenotypeBased rare disease case matching tool based on online dating algorithms for the acceleration of exome interpretation. Hum Mutat 36:432-438.
-
(2015)
Hum Mutat
, vol.36
, pp. 432-438
-
-
Gottlieb, M.M.1
Arenillas, D.J.2
Maithripala, S.3
Maurer, Z.D.4
TarailoGraovac, M.5
Armstrong, L.6
Patel, M.7
Karnebeek, C.8
Wasserman, W.W.9
-
12
-
-
84921633944
-
Phen-Gen: combining phenotype and genotype to analyze rare disorders
-
Javed A, Agrawal S, Ng PC. 2014. Phen-Gen: combining phenotype and genotype to analyze rare disorders. Nat Meth 11:935-937.
-
(2014)
Nat Meth
, vol.11
, pp. 935-937
-
-
Javed, A.1
Agrawal, S.2
Ng, P.C.3
-
13
-
-
85087282802
-
Semantic similarity based on corpus statistics and lexical taxonomy
-
In Proceedings of International Conference on Research in Computational Linguistics
-
Jiang JJ, Conrath DW. 1997. Semantic similarity based on corpus statistics and lexical taxonomy. In Proceedings of International Conference on Research in Computational Linguistics 19-33.
-
(1997)
, pp. 19-33
-
-
Jiang, J.J.1
Conrath, D.W.2
-
14
-
-
70350474767
-
Clinical diagnostics in human genetics with semantic similarity searches in ontologies
-
Köhler S, Schulz MH, Krawitz P, Bauer S, Dolken S, Ott CE, Mundlos C, Horn D, Mundlos S, Robinson PN. 2009. Clinical diagnostics in human genetics with semantic similarity searches in ontologies. Am J Hum Genet 85:457-464.
-
(2009)
Am J Hum Genet
, vol.85
, pp. 457-464
-
-
Köhler, S.1
Schulz, M.H.2
Krawitz, P.3
Bauer, S.4
Dolken, S.5
Ott, C.E.6
Mundlos, C.7
Horn, D.8
Mundlos, S.9
Robinson, P.N.10
-
15
-
-
84891749517
-
The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data
-
Köhler S, Doelken SC, Mungall CJ, Bauer S, Firth HV, Bailleul-Forestier I, Black GCM, Brown DL, Brudno M, Campbell J, FitzPatrick DR, Eppig JT, et al. 2014. The Human Phenotype Ontology project: linking molecular biology and disease through phenotype data. Nucleic Acids Res 42:D966-D974.
-
(2014)
Nucleic Acids Res
, vol.42
, pp. D966-D974
-
-
Köhler, S.1
Doelken, S.C.2
Mungall, C.J.3
Bauer, S.4
Firth, H.V.5
Bailleul-Forestier, I.6
Black, G.C.M.7
Brown, D.L.8
Brudno, M.9
Campbell, J.10
FitzPatrick, D.R.11
Eppig, J.T.12
-
16
-
-
84949859228
-
Mandibulofacial dysostosis with microcephaly
-
In: GeneReviews
-
Lines M, Hartley T, Boycott K. 2014. Mandibulofacial dysostosis with microcephaly. In: GeneReviews. Available from: http://www.ncbi.nlm.nih.gov/books/NBK214367
-
(2014)
-
-
Lines, M.1
Hartley, T.2
Boycott, K.3
-
17
-
-
84857055806
-
Haploinsufficiency of a spliceosomal GTPase encoded by EFTUD2 causes mandibulofacial dysostosis with microcephaly
-
Lines MA, Huang L, Schwartzentruber J, Douglas SL, Lynch DC, Beaulieu C, Guion-Almeida ML, Zechi-Ceide RM, Gener B, Gillessen-Kaesbach G, Nava C, Baujat G, et al. 2012. Haploinsufficiency of a spliceosomal GTPase encoded by EFTUD2 causes mandibulofacial dysostosis with microcephaly. Am J Hum Genet 90:369-377.
-
(2012)
Am J Hum Genet
, vol.90
, pp. 369-377
-
-
Lines, M.A.1
Huang, L.2
Schwartzentruber, J.3
Douglas, S.L.4
Lynch, D.C.5
Beaulieu, C.6
Guion-Almeida, M.L.7
Zechi-Ceide, R.M.8
Gener, B.9
Gillessen-Kaesbach, G.10
Nava, C.11
Baujat, G.12
-
18
-
-
84924169727
-
York platelet syndrome is a CRAC channelopathy due to gain-of-function mutations in STIM1
-
Markello T, Chen D, Kwan JY, Horkayne-Szakaly I, Morrison A, Simakova O, Maric I, Lozier J, Cullinane AR, Kilo T, Meister L, Pakzad K, et al. 2015. York platelet syndrome is a CRAC channelopathy due to gain-of-function mutations in STIM1. Mol Genet Metab 114:474-482.
-
(2015)
Mol Genet Metab
, vol.114
, pp. 474-482
-
-
Markello, T.1
Chen, D.2
Kwan, J.Y.3
Horkayne-Szakaly, I.4
Morrison, A.5
Simakova, O.6
Maric, I.7
Lozier, J.8
Cullinane, A.R.9
Kilo, T.10
Meister, L.11
Pakzad, K.12
-
19
-
-
79956272259
-
Evaluating go-based semantic similarity measures
-
In Proceedings of 10th Annual Bio-Ontologies Meeting 37:38.
-
Pesquita C, Faria D, Bastos H, Falcão A, Couto F. 2007. Evaluating go-based semantic similarity measures. In Proceedings of 10th Annual Bio-Ontologies Meeting 37:38.
-
(2007)
-
-
Pesquita, C.1
Faria, D.2
Bastos, H.3
Falcão, A.4
Couto, F.5
-
20
-
-
68249087607
-
Semantic similarity in biomedical ontologies
-
Pesquita C, Faria D, Falcão AO, Lord P, Couto FM. 2009. Semantic similarity in biomedical ontologies. PLoS Comput Biol 5:e1000443.
-
(2009)
PLoS Comput Biol
, vol.5
, pp. e1000443
-
-
Pesquita, C.1
Faria, D.2
Falcão, A.O.3
Lord, P.4
Couto, F.M.5
-
21
-
-
84941873668
-
The Matchmaker Exchange: a platform for rare disease gene discovery
-
Philippakis AA, Azzariti DR, Beltran S, Brookes AJ, Brownstein CA, Brudno M, Brunner HG, Buske OJ, Carey WK, Doll C, Dumitriu S, Dyke SOM, et al. 2015. The Matchmaker Exchange: a platform for rare disease gene discovery. Hum Mutat 36:915-921.
-
(2015)
Hum Mutat
, vol.36
, pp. 915-921
-
-
Philippakis, A.A.1
Azzariti, D.R.2
Beltran, S.3
Brookes, A.J.4
Brownstein, C.A.5
Brudno, M.6
Brunner, H.G.7
Buske, O.J.8
Carey, W.K.9
Doll, C.10
Dumitriu, S.11
Dyke, S.O.M.12
-
22
-
-
0003033112
-
-
Using information content to evaluate semantic similarity in a taxonomy. In Proceedings of the 14th International Joint Conference on Artificial Intelligence
-
Resnik P. 1995. Using information content to evaluate semantic similarity in a taxonomy. In Proceedings of the 14th International Joint Conference on Artificial Intelligence 448-453.
-
(1995)
, pp. 448-453
-
-
Resnik, P.1
-
23
-
-
84892959492
-
Improved exome prioritization of disease genes through cross-species phenotype comparison
-
Robinson PN, Köhler S, Oellrich A, Wang K, Mungall CJ, Lewis SE, Washington N, Bauer S, Seelow D, Krawitz P, Gilissen C, Haendel M, Smedley D. 2014. Improved exome prioritization of disease genes through cross-species phenotype comparison. Gene Res 24:340-348.
-
(2014)
Gene Res
, vol.24
, pp. 340-348
-
-
Robinson, P.N.1
Köhler, S.2
Oellrich, A.3
Wang, K.4
Mungall, C.J.5
Lewis, S.E.6
Washington, N.7
Bauer, S.8
Seelow, D.9
Krawitz, P.10
Gilissen, C.11
Haendel, M.12
Smedley, D.13
-
24
-
-
84898743768
-
Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families
-
Singleton MV, Guthery SL, Voelkerding KV, Chen K, Kennedy B, Margraf RL, Durtschi J, Eilbeck K, Reese MG, Jorde LB, Huff CD, Yandell M. 2014. Phevor combines multiple biomedical ontologies for accurate identification of disease-causing alleles in single individuals and small nuclear families. Am J Hum Gen 94:599-610.
-
(2014)
Am J Hum Gen
, vol.94
, pp. 599-610
-
-
Singleton, M.V.1
Guthery, S.L.2
Voelkerding, K.V.3
Chen, K.4
Kennedy, B.5
Margraf, R.L.6
Durtschi, J.7
Eilbeck, K.8
Reese, M.G.9
Jorde, L.B.10
Huff, C.D.11
Yandell, M.12
-
25
-
-
84941879557
-
Next-generation diagnostics and disease gene discovery with the Exomiser
-
In preparation.
-
Smedley D, Jacobsen J, Jäger M, Köhler S, Holtgrewe M, Schubach M, Siragusa E, Zemojtel T, Buske O, Bone W, Haendel M, Robinson PN. 2015. Next-generation diagnostics and disease gene discovery with the Exomiser. In preparation.
-
(2015)
-
-
Smedley, D.1
Jacobsen, J.2
Jäger, M.3
Köhler, S.4
Holtgrewe, M.5
Schubach, M.6
Siragusa, E.7
Zemojtel, T.8
Buske, O.9
Bone, W.10
Haendel, M.11
Robinson, P.N.12
-
26
-
-
84885393730
-
PhenoDigm: analyzing curated annotations to associate animal models with human diseases
-
Sanger Mouse Genetics Project
-
Smedley D, Oellrich A, Köhler S, Ruef B, Sanger Mouse Genetics Project, Westerfield M, Robinson P, Lewis S, Mungall C. 2013. PhenoDigm: analyzing curated annotations to associate animal models with human diseases. Database 2013:bat025.
-
(2013)
Database
, vol.2013
, pp. bat025
-
-
Smedley, D.1
Oellrich, A.2
Köhler, S.3
Ruef, B.4
Westerfield, M.5
Robinson, P.6
Lewis, S.7
Mungall, C.8
-
27
-
-
84941877741
-
GeneMatcher: A matching tool for connecting investigators with an interest in the same gene
-
Sobreira N, Schiettecatte F, Valle D, Hamosh A. 2015. GeneMatcher: A matching tool for connecting investigators with an interest in the same gene. Hum Mutat 36:928-930.
-
(2015)
Hum Mutat
, vol.36
, pp. 928-930
-
-
Sobreira, N.1
Schiettecatte, F.2
Valle, D.3
Hamosh, A.4
-
28
-
-
84975742565
-
A map of human genome variation from population-scale sequencing
-
The 1000 Genomes Project Consortium. 2010. A map of human genome variation from population-scale sequencing. Nature 467:1061-1073.
-
(2010)
Nature
, vol.467
, pp. 1061-1073
-
-
-
29
-
-
84941878194
-
How good is your phenotyping? Methods for quality assessment
-
In Proceedings of Phenotype Day 2014
-
Washington NL, Haendel MA, Köhler S, Lewis SE, Robinson P, Smedley D, Mungall CJ. 2014. How good is your phenotyping? Methods for quality assessment. In Proceedings of Phenotype Day 2014. Available from: http://phenoday2014.bio-lark.org/pdf/6.pdf
-
(2014)
-
-
Washington, N.L.1
Haendel, M.A.2
Köhler, S.3
Lewis, S.E.4
Robinson, P.5
Smedley, D.6
Mungall, C.J.7
-
30
-
-
85016022631
-
Coverage of phenotypes in standard terminologies
-
In Proceedings of Phenotype Day 2014
-
Winnenburg R, Bodenreider O. 2014. Coverage of phenotypes in standard terminologies. In Proceedings of Phenotype Day 2014. Available from: http://phenoday2014.bio-lark.org/pdf/5.pdf
-
(2014)
-
-
Winnenburg, R.1
Bodenreider, O.2
-
31
-
-
84907284564
-
Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome
-
252-123
-
Zemojtel T, Köhler S, Mackenroth L, Jäger M, Hecht J, Krawitz P, Graul-Neumann L, Doelken S, Ehmke N, Spielmann M, Øien NC, Schweiger MR, et al. 2014. Effective diagnosis of genetic disease by computational phenotype analysis of the disease-associated genome. Sci Trans Med 6:252ra123.
-
(2014)
Sci Trans Med
, vol.6
-
-
Zemojtel, T.1
Köhler, S.2
Mackenroth, L.3
Jäger, M.4
Hecht, J.5
Krawitz, P.6
Graul-Neumann, L.7
Doelken, S.8
Ehmke, N.9
Spielmann, M.10
Øien, N.C.11
Schweiger, M.R.12
|