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Volumn 2016, Issue 8, 2016, Pages

MOST: A modified MLST typing tool based on short read sequencing

Author keywords

Assembly based approach; Mapping based approach; Multilocus sequence typing; Whole genome sequencing

Indexed keywords

BACTERIAL GENOME; MAJOR CLINICAL STUDY; MULTILOCUS SEQUENCE TYPING; NONHUMAN; QUANTITATIVE STUDY; RELIABILITY; SALMONELLA; SPECIES; STREPTOCOCCUS PNEUMONIAE;

EID: 84992091169     PISSN: None     EISSN: 21678359     Source Type: Journal    
DOI: 10.7717/peerj.2308     Document Type: Article
Times cited : (104)

References (8)
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    • Trimmomatic: a flexible trimmer for Illumina se-quence data
    • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina se-quence data. Bioinformatics 30(15):2114-2120 DOI 10.1093/bioinformatics/btu170.
    • (2014) Bioinformatics , vol.30 , Issue.15 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 3
    • 84866902363 scopus 로고    scopus 로고
    • Short read sequence typing (SRST): multi-locus sequence types from short reads
    • Inouye M, Conway TC, Zobel J, Holt KE. 2012. Short read sequence typing (SRST): multi-locus sequence types from short reads. BMC Genomics 13:338 DOI 10.1186/1471-2164-13-338.
    • (2012) BMC Genomics , vol.13 , pp. 338
    • Inouye, M.1    Conway, T.C.2    Zobel, J.3    Holt, K.E.4
  • 5
    • 78650827616 scopus 로고    scopus 로고
    • BIGSdb: scalable analysis of bacterial genome variation at the population level
    • Jolley KA, Maiden MC. 2010. BIGSdb: scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 11:595 DOI 10.1186/1471-2105-11-595.
    • (2010) BMC Bioinformatics , vol.11 , pp. 595
    • Jolley, K.A.1    Maiden, M.C.2
  • 6
    • 84873822504 scopus 로고    scopus 로고
    • Automated extraction of typing information for bacterial pathogens from whole genome sequence data: neisseria meningitidis as an exemplar
    • Jolley KA, Maiden MC. 2013. Automated extraction of typing information for bacterial pathogens from whole genome sequence data: neisseria meningitidis as an exemplar. Eurosurveillance 18(4):20379.
    • (2013) Eurosurveillance , vol.18 , Issue.4 , pp. 20379
    • Jolley, K.A.1    Maiden, M.C.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.