-
1
-
-
33947129778
-
Salmonella, the host and disease: a brief review
-
17146467, ().:–
-
Coburn B, Grassl GA, Finlay BB, (2007) Salmonella, the host and disease: a brief review. Immunol Cell Biol85: 112–118. 17146467
-
(2007)
Immunol Cell Biol
, vol.85
, pp. 112-118
-
-
Coburn, B.1
Grassl, G.A.2
Finlay, B.B.3
-
3
-
-
0037191716
-
Typhoid fever
-
12456854, ().:–
-
Parry CM, Hien TT, Dougan G, White NJ, Farrar JJ, (2002) Typhoid fever. N Engl J Med347: 1770–1782. 12456854
-
(2002)
N Engl J Med
, vol.347
, pp. 1770-1782
-
-
Parry, C.M.1
Hien, T.T.2
Dougan, G.3
White, N.J.4
Farrar, J.J.5
-
4
-
-
84907518951
-
Salmonella enterica serovar Typhi and the pathogenesis of typhoid fever
-
25208300, ().:–
-
Dougan G, Baker S, (2014) Salmonella enterica serovar Typhi and the pathogenesis of typhoid fever. Annu Rev Microbiol68: 317–336. doi: 10.1146/annurev-micro-091313-10373925208300
-
(2014)
Annu Rev Microbiol
, vol.68
, pp. 317-336
-
-
Dougan, G.1
Baker, S.2
-
5
-
-
0036123730
-
Salmonella enterica serotype Typhimurium and its host-adapted variants
-
11953356, . ().:–
-
Rabsch W, Andrews HL, Kingsley RA, Prager R, Tschape H, et al. (2002) Salmonella enterica serotype Typhimurium and its host-adapted variants. Infect Immun70: 2249–2255. 11953356
-
(2002)
Infect Immun
, vol.70
, pp. 2249-2255
-
-
Rabsch, W.1
Andrews, H.L.2
Kingsley, R.A.3
Prager, R.4
Tschape, H.5
-
6
-
-
84864059917
-
Multilocus sequence typing as a replacement for serotyping in Salmonella enterica
-
22737074, . ().:
-
Achtman M, Wain J, Weill FX, Nair S, Zhou Z, et al. (2012) Multilocus sequence typing as a replacement for serotyping in Salmonella enterica. PLoS Pathog8: e1002776. doi: 10.1371/journal.ppat.100277622737074
-
(2012)
PLoS Pathog
, vol.8
, pp. e1002776
-
-
Achtman, M.1
Wain, J.2
Weill, F.X.3
Nair, S.4
Zhou, Z.5
-
7
-
-
0037173117
-
Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis
-
12072558, ().:–
-
Porwollik S, Wong RM, McClelland M, (2002) Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis. Proc Natl Acad Sci U S A99: 8956–8961. 12072558
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 8956-8961
-
-
Porwollik, S.1
Wong, R.M.2
McClelland, M.3
-
8
-
-
0037224655
-
Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray
-
12511502, . ().:–
-
Chan K, Baker S, Kim CC, Detweiler CS, Dougan G, et al. (2003) Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray. J Bacteriol185: 553–563. 12511502
-
(2003)
J Bacteriol
, vol.185
, pp. 553-563
-
-
Chan, K.1
Baker, S.2
Kim, C.C.3
Detweiler, C.S.4
Dougan, G.5
-
9
-
-
33751558792
-
Evolutionary history of Salmonella typhi
-
17124322, . ().:–
-
Roumagnac P, Weill F-X, Dolecek C, Baker S, Brisse S, et al. (2006) Evolutionary history of Salmonella typhi. Science314: 1301–1304. 17124322
-
(2006)
Science
, vol.314
, pp. 1301-1304
-
-
Roumagnac, P.1
Weill, F.-X.2
Dolecek, C.3
Baker, S.4
Brisse, S.5
-
10
-
-
84928796217
-
Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa
-
25803844, . ().:
-
Okoro CK, Barquist L, Connor TR, Harris SR, Clare S, et al. (2015) Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa. PLoS Negl Trop Dis9: e0003611. doi: 10.1371/journal.pntd.000361125803844
-
(2015)
PLoS Negl Trop Dis
, vol.9
, pp. e0003611
-
-
Okoro, C.K.1
Barquist, L.2
Connor, T.R.3
Harris, S.R.4
Clare, S.5
-
11
-
-
77949652929
-
Estimation of Salmonella prevalence in UK egg-laying holdings
-
20116871, . ().:–
-
Arnold ME, Papadopoulou C, Davies RH, Carrique-Mas JJ, Evans SJ, et al. (2010) Estimation of Salmonella prevalence in UK egg-laying holdings. Prev Vet Med94: 306–309. doi: 10.1016/j.prevetmed.2010.01.00420116871
-
(2010)
Prev Vet Med
, vol.94
, pp. 306-309
-
-
Arnold, M.E.1
Papadopoulou, C.2
Davies, R.H.3
Carrique-Mas, J.J.4
Evans, S.J.5
-
12
-
-
85000399636
-
A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: “near real-time” application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014
-
. ()
-
Inns T, Lane C, Peters T, Dallman T, Chatt C, et al. (2015) A multi-country Salmonella Enteritidis phage type 14b outbreak associated with eggs from a German producer: “near real-time” application of whole genome sequencing and food chain investigations, United Kingdom, May to September 2014. Euro Surveill20.
-
(2015)
Euro Surveill
, vol.20
-
-
Inns, T.1
Lane, C.2
Peters, T.3
Dallman, T.4
Chatt, C.5
-
13
-
-
84859198812
-
Multiple outbreaks of Salmonella braenderup associated with consumption of iceberg lettuce
-
21916661, ().:–
-
Gajraj R, Pooransingh S, Hawker JI, Olowokure B, (2012) Multiple outbreaks of Salmonella braenderup associated with consumption of iceberg lettuce. Int J Environ Health Res22: 150–155. doi: 10.1080/09603123.2011.61311421916661
-
(2012)
Int J Environ Health Res
, vol.22
, pp. 150-155
-
-
Gajraj, R.1
Pooransingh, S.2
Hawker, J.I.3
Olowokure, B.4
-
14
-
-
35748968455
-
Prevalence and characterization of Salmonella enterica serovar Weltevreden from imported seafood
-
17993374, ().:–
-
Ponce E, Khan AA, Cheng CM, Summage-West C, Cerniglia CE, (2008) Prevalence and characterization of Salmonella enterica serovar Weltevreden from imported seafood. Food Microbiol25: 29–35. 17993374
-
(2008)
Food Microbiol
, vol.25
, pp. 29-35
-
-
Ponce, E.1
Khan, A.A.2
Cheng, C.M.3
Summage-West, C.4
Cerniglia, C.E.5
-
15
-
-
33644552122
-
Web-based surveillance and global Salmonella distribution, 2000–2002
-
16704773, . ().:
-
Galanis E, Wong DMALF, Patrick ME, Binsztein N, Cieslik A, et al. (2006) Web-based surveillance and global Salmonella distribution, 2000–2002. Emerg Infect Dis12: 381. 16704773
-
(2006)
Emerg Infect Dis
, vol.12
, pp. 381
-
-
Galanis, E.1
Wong, D.M.A.L.F.2
Patrick, M.E.3
Binsztein, N.4
Cieslik, A.5
-
16
-
-
39749113230
-
Outbreak of Salmonella Weltevreden infections in Norway, Denmark and Finland associated with alfalfa sprouts, July-October 2007
-
18053569, . ().:
-
Emberland KE, Ethelberg S, Kuusi M, Vold L, Jensvoll L, et al. (2007) Outbreak of Salmonella Weltevreden infections in Norway, Denmark and Finland associated with alfalfa sprouts, July-October 2007. Euro Surveill12: E071129.4. 18053569
-
(2007)
Euro Surveill
, vol.12
, pp. E071129.4
-
-
Emberland, K.E.1
Ethelberg, S.2
Kuusi, M.3
Vold, L.4
Jensvoll, L.5
-
17
-
-
84930064392
-
Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events
-
25961941, . ().:–
-
Wong VK, Baker S, Pickard DJ, Parkhill J, Page AJ, et al. (2015) Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events. Nat Genet47: 632–639. doi: 10.1038/ng.328125961941
-
(2015)
Nat Genet
, vol.47
, pp. 632-639
-
-
Wong, V.K.1
Baker, S.2
Pickard, D.J.3
Parkhill, J.4
Page, A.J.5
-
18
-
-
84868201561
-
Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa
-
23023330, . ().:–
-
Okoro CK, Kingsley RA, Connor TR, Harris SR, Parry CM, et al. (2012) Intracontinental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa. Nat Genet44: 1215–1221. doi: 10.1038/ng.242323023330
-
(2012)
Nat Genet
, vol.44
, pp. 1215-1221
-
-
Okoro, C.K.1
Kingsley, R.A.2
Connor, T.R.3
Harris, S.R.4
Parry, C.M.5
-
19
-
-
84959526867
-
Draft Genome Sequence of Multidrug Resistant Salmonella enterica serovar Weltevreden Isolated from Seafood
-
25874015, . ().:–
-
Deekshit VK, Ballamoole KK, Rai P, Madhushankara Karunasagar I, et al. (2015) Draft Genome Sequence of Multidrug Resistant Salmonella enterica serovar Weltevreden Isolated from Seafood. J Genomics3: 57–58. doi: 10.7150/jgen.1125325874015
-
(2015)
J Genomics
, vol.3
, pp. 57-58
-
-
Deekshit, V.K.1
Ballamoole, K.K.2
Rai, P.3
Madhushankara4
Karunasagar, I.5
-
20
-
-
84859215664
-
Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars
-
22341936, ().:–
-
Brankatschk K, Blom J, Goesmann A, Smits TH, Duffy B, (2012) Comparative genomic analysis of Salmonella enterica subsp. enterica serovar Weltevreden foodborne strains with other serovars. Int J Food Microbiol155: 247–256. doi: 10.1016/j.ijfoodmicro.2012.01.02422341936
-
(2012)
Int J Food Microbiol
, vol.155
, pp. 247-256
-
-
Brankatschk, K.1
Blom, J.2
Goesmann, A.3
Smits, T.H.4
Duffy, B.5
-
21
-
-
84899090573
-
Kraken: ultrafast metagenomic sequence classification using exact alignments
-
24580807, ().:
-
Wood DE, Salzberg SL, (2014) Kraken: ultrafast metagenomic sequence classification using exact alignments. Genome Biol15: R46. doi: 10.1186/gb-2014-15-3-r4624580807
-
(2014)
Genome Biol
, vol.15
, pp. R46
-
-
Wood, D.E.1
Salzberg, S.L.2
-
22
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
19505943, . ().:–
-
Li H, Handsaker B, Wysoker A, Fennell T, Ruan J, et al. (2009) The Sequence Alignment/Map format and SAMtools. Bioinformatics25: 2078–2079. doi: 10.1093/bioinformatics/btp35219505943
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
-
23
-
-
43149115851
-
Velvet: algorithms for de novo short read assembly using de Bruijn graphs
-
18349386, ().:–
-
Zerbino DR, Birney E, (2008) Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res18: 821–829. doi: 10.1101/gr.074492.10718349386
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
24
-
-
79951530130
-
Scaffolding pre-assembled contigs using SSPACE
-
21149342, ().:–
-
Boetzer M, Henkel CV, Jansen HJ, Butler D, Pirovano W, (2011) Scaffolding pre-assembled contigs using SSPACE. Bioinformatics27: 578–579. doi: 10.1093/bioinformatics/btq68321149342
-
(2011)
Bioinformatics
, vol.27
, pp. 578-579
-
-
Boetzer, M.1
Henkel, C.V.2
Jansen, H.J.3
Butler, D.4
Pirovano, W.5
-
25
-
-
84862591603
-
Toward almost closed genomes with GapFiller
-
22731987, ().:
-
Boetzer M, Pirovano W, (2012) Toward almost closed genomes with GapFiller. Genome Biol13: R56. doi: 10.1186/gb-2012-13-6-r5622731987
-
(2012)
Genome Biol
, vol.13
, pp. R56
-
-
Boetzer, M.1
Pirovano, W.2
-
26
-
-
33947398002
-
Minimus: a fast, lightweight genome assembler
-
17324286, ().:
-
Sommer DD, Delcher AL, Salzberg SL, Pop M, (2007) Minimus: a fast, lightweight genome assembler. BMC Bioinformatics8: 64. 17324286
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 64
-
-
Sommer, D.D.1
Delcher, A.L.2
Salzberg, S.L.3
Pop, M.4
-
27
-
-
84878076144
-
REAPR: a universal tool for genome assembly evaluation
-
23710727, . ().:
-
Hunt M, Kikuchi T, Sanders M, Newbold C, Berriman M, et al. (2013) REAPR: a universal tool for genome assembly evaluation. Genome Biol14: R47. doi: 10.1186/gb-2013-14-5-r4723710727
-
(2013)
Genome Biol
, vol.14
, pp. R47
-
-
Hunt, M.1
Kikuchi, T.2
Sanders, M.3
Newbold, C.4
Berriman, M.5
-
28
-
-
84901417347
-
Prokka: rapid prokaryotic genome annotation
-
24642063, ().:–
-
Seemann T, (2014) Prokka: rapid prokaryotic genome annotation. Bioinformatics30: 2068–2069. doi: 10.1093/bioinformatics/btu15324642063
-
(2014)
Bioinformatics
, vol.30
, pp. 2068-2069
-
-
Seemann, T.1
-
29
-
-
84933069206
-
Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins
-
25414349, . ().:
-
Croucher NJ, Page AJ, Connor TR, Delaney AJ, Keane JA, et al. (2015) Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins. Nucleic Acids Res43: e15. doi: 10.1093/nar/gku119625414349
-
(2015)
Nucleic Acids Res
, vol.43
, pp. e15
-
-
Croucher, N.J.1
Page, A.J.2
Connor, T.R.3
Delaney, A.J.4
Keane, J.A.5
-
30
-
-
84899553363
-
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
-
24451623, ().:–
-
Stamatakis A, (2014) RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics30: 1312–1313. doi: 10.1093/bioinformatics/btu03324451623
-
(2014)
Bioinformatics
, vol.30
, pp. 1312-1313
-
-
Stamatakis, A.1
-
31
-
-
84864439921
-
FastML: a web server for probabilistic reconstruction of ancestral sequences
-
22661579, . ().:–
-
Ashkenazy H, Penn O, Doron-Faigenboim A, Cohen O, Cannarozzi G, et al. (2012) FastML: a web server for probabilistic reconstruction of ancestral sequences. Nucleic Acids Res40: W580–W584. doi: 10.1093/nar/gks49822661579
-
(2012)
Nucleic Acids Res
, vol.40
, pp. W580-W584
-
-
Ashkenazy, H.1
Penn, O.2
Doron-Faigenboim, A.3
Cohen, O.4
Cannarozzi, G.5
-
32
-
-
84876526192
-
Hierarchical and spatially explicit clustering of DNA sequences with BAPS software
-
23408797, ().:–
-
Cheng L, Connor TR, Siren J, Aanensen DM, Corander J, (2013) Hierarchical and spatially explicit clustering of DNA sequences with BAPS software. Mol Biol Evol30: 1224–1228. doi: 10.1093/molbev/mst02823408797
-
(2013)
Mol Biol Evol
, vol.30
, pp. 1224-1228
-
-
Cheng, L.1
Connor, T.R.2
Siren, J.3
Aanensen, D.M.4
Corander, J.5
-
33
-
-
77955405475
-
Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor
-
20562413, . ().:–
-
McLaren W, Pritchard B, Rios D, Chen Y, Flicek P, et al. (2010) Deriving the consequences of genomic variants with the Ensembl API and SNP Effect Predictor. Bioinformatics26: 2069–2070. doi: 10.1093/bioinformatics/btq33020562413
-
(2010)
Bioinformatics
, vol.26
, pp. 2069-2070
-
-
McLaren, W.1
Pritchard, B.2
Rios, D.3
Chen, Y.4
Flicek, P.5
-
34
-
-
84959494289
-
-
Hunt Harris, S.R & Mather, A.E M (2015) ARIBA: Antibiotic Resistance Identification By Assemb
-
Hunt Harris, S.R & Mather, A.E M (2015) ARIBA: Antibiotic Resistance Identification By Assembly.: https://github.com/sanger-pathogens/ariba.
-
-
-
-
35
-
-
33745634395
-
Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences
-
16731699, ().:–
-
Li W, Godzik A, (2006) Cd-hit: A fast program for clustering and comparing large sets of protein or nucleotide sequences. Bioinformatics22: 1658–1659. 16731699
-
(2006)
Bioinformatics
, vol.22
, pp. 1658-1659
-
-
Li, W.1
Godzik, A.2
-
36
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
14759262, . ().:
-
Kurtz S, Phillippy A, Delcher AL, Smoot M, Shumway M, et al. (2004) Versatile and open software for comparing large genomes. Genome Biol5: R12. 14759262
-
(2004)
Genome Biol
, vol.5
, pp. R12
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
Smoot, M.4
Shumway, M.5
-
37
-
-
84947793096
-
Roary: rapid large-scale prokaryote pan genome analysis
-
. ()
-
Page AJ, Cummins CA, Hunt M, Wong VK, Reuter S, et al. (2015) Roary: rapid large-scale prokaryote pan genome analysis. Bioinformatics.
-
(2015)
Bioinformatics
-
-
Page, A.J.1
Cummins, C.A.2
Hunt, M.3
Wong, V.K.4
Reuter, S.5
-
38
-
-
0036529479
-
An efficient algorithm for large-scale detection of protein families
-
11917018, ().:–
-
Enright AJ, Van Dongen S, Ouzounis CA, (2002) An efficient algorithm for large-scale detection of protein families. Nucleic Acids Res30: 1575–1584. 11917018
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 1575-1584
-
-
Enright, A.J.1
Van Dongen, S.2
Ouzounis, C.A.3
-
39
-
-
84934435372
-
Phylogeny-aware alignment with PRANK
-
24170401, ().:–
-
Loytynoja A, (2014) Phylogeny-aware alignment with PRANK. Methods Mol Biol1079: 155–170. doi: 10.1007/978-1-62703-646-7_1024170401
-
(2014)
Methods Mol Biol
, vol.1079
, pp. 155-170
-
-
Loytynoja, A.1
-
40
-
-
60549098416
-
Interaction of enteric bacterial pathogens with murine embryonic stem cells
-
19029302, ().:–
-
Yu J, Rossi R, Hale C, Goulding D, Dougan G, (2009) Interaction of enteric bacterial pathogens with murine embryonic stem cells. Infect Immun77: 585–597. doi: 10.1128/IAI.01003-0819029302
-
(2009)
Infect Immun
, vol.77
, pp. 585-597
-
-
Yu, J.1
Rossi, R.2
Hale, C.3
Goulding, D.4
Dougan, G.5
-
41
-
-
84928341969
-
A Prospective Multi-Center Observational Study of Children Hospitalized with Diarrhea in Ho Chi Minh City, Vietnam
-
25802437, . ().:–
-
Thompson CN, Phan MVT, Hoang NVM, Van Minh P, Vinh NT, et al. (2015) A Prospective Multi-Center Observational Study of Children Hospitalized with Diarrhea in Ho Chi Minh City, Vietnam. Am J Trop Med Hyg92: 1045–1052. doi: 10.4269/ajtmh.14-065525802437
-
(2015)
Am J Trop Med Hyg
, vol.92
, pp. 1045-1052
-
-
Thompson, C.N.1
Phan, M.V.T.2
Hoang, N.V.M.3
Van Minh, P.4
Vinh, N.T.5
-
42
-
-
84921327912
-
Patterns of genome evolution that have accompanied host adaptation in Salmonella
-
25535353, . ().:–
-
Langridge GC, Fookes M, Connor TR, Feltwell T, Feasey N, et al. (2015) Patterns of genome evolution that have accompanied host adaptation in Salmonella. Proc Natl Acad Sci112: 863–868. doi: 10.1073/pnas.141670711225535353
-
(2015)
Proc Natl Acad Sci
, vol.112
, pp. 863-868
-
-
Langridge, G.C.1
Fookes, M.2
Connor, T.R.3
Feltwell, T.4
Feasey, N.5
-
43
-
-
84857963108
-
Genomic variation in Salmonella enterica core genes for epidemiological typing
-
22409488, ().:
-
Leekitcharoenphon P, Lukjancenko O, Friis C, Aarestrup FM, Ussery DW, (2012) Genomic variation in Salmonella enterica core genes for epidemiological typing. BMC Genomics13: 88. doi: 10.1186/1471-2164-13-8822409488
-
(2012)
BMC Genomics
, vol.13
, pp. 88
-
-
Leekitcharoenphon, P.1
Lukjancenko, O.2
Friis, C.3
Aarestrup, F.M.4
Ussery, D.W.5
-
44
-
-
84870861913
-
DNA sequence analysis of plasmids from multidrug resistant Salmonella enterica serotype Heidelberg isolates
-
23251446, . ().:
-
Han J, Lynne AM, David DE, Tang H, Xu J, et al. (2012) DNA sequence analysis of plasmids from multidrug resistant Salmonella enterica serotype Heidelberg isolates. PLoS One7: e51160. doi: 10.1371/journal.pone.005116023251446
-
(2012)
PLoS One
, vol.7
, pp. e51160
-
-
Han, J.1
Lynne, A.M.2
David, D.E.3
Tang, H.4
Xu, J.5
-
45
-
-
7244248958
-
The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics
-
15518875, ().:–
-
Gilmour MW, Thomson NR, Sanders M, Parkhill J, Taylor DE, (2004) The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. Plasmid52: 182–202. 15518875
-
(2004)
Plasmid
, vol.52
, pp. 182-202
-
-
Gilmour, M.W.1
Thomson, N.R.2
Sanders, M.3
Parkhill, J.4
Taylor, D.E.5
-
46
-
-
84908409234
-
Dissemination of the transmissible quinolone-resistance gene qnrS1 by IncX plasmids in Nigeria
-
25340787, ().:
-
Sumrall ET, Gallo EB, Aboderin AO, Lamikanra A, Okeke IN, (2014) Dissemination of the transmissible quinolone-resistance gene qnrS1 by IncX plasmids in Nigeria. PLoS One9: e110279. doi: 10.1371/journal.pone.011027925340787
-
(2014)
PLoS One
, vol.9
, pp. e110279
-
-
Sumrall, E.T.1
Gallo, E.B.2
Aboderin, A.O.3
Lamikanra, A.4
Okeke, I.N.5
-
47
-
-
57549098085
-
Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104
-
18849424, . ().:–
-
Cooke FJ, Brown DJ, Fookes M, Pickard D, Ivens A, et al. (2008) Characterization of the genomes of a diverse collection of Salmonella enterica serovar Typhimurium definitive phage type 104. J Bacteriol190: 8155–8162. doi: 10.1128/JB.00636-0818849424
-
(2008)
J Bacteriol
, vol.190
, pp. 8155-8162
-
-
Cooke, F.J.1
Brown, D.J.2
Fookes, M.3
Pickard, D.4
Ivens, A.5
-
48
-
-
2342538999
-
The role of prophage-like elements in the diversity of Salmonella enterica serovars
-
15136033, . ().:–
-
Thomson N, Baker S, Pickard D, Fookes M, Anjum M, et al. (2004) The role of prophage-like elements in the diversity of Salmonella enterica serovars. J Mol Biol339: 279–300. 15136033
-
(2004)
J Mol Biol
, vol.339
, pp. 279-300
-
-
Thomson, N.1
Baker, S.2
Pickard, D.3
Fookes, M.4
Anjum, M.5
-
49
-
-
0026717496
-
Salmonella phage PSP3, another member of the P2-like phage group
-
1566584, ().:
-
Bullas LR, Mostaghimi AR, Arensdorf JJ, Rajadas PT, Zuccarelli AJ, (1992) Salmonella phage PSP3, another member of the P2-like phage group. Virology188: 414. 1566584
-
(1992)
Virology
, vol.188
, pp. 414
-
-
Bullas, L.R.1
Mostaghimi, A.R.2
Arensdorf, J.J.3
Rajadas, P.T.4
Zuccarelli, A.J.5
-
50
-
-
51149114355
-
Interaction of Salmonella enterica serovar Typhi with cultured epithelial cells: roles of surface structures in adhesion and invasion
-
18599820, . ().:–
-
Bishop A, House D, Perkins T, Baker S, Kingsley RA, et al. (2008) Interaction of Salmonella enterica serovar Typhi with cultured epithelial cells: roles of surface structures in adhesion and invasion. Microbiology154: 1914–1926. doi: 10.1099/mic.0.2008/016998-018599820
-
(2008)
Microbiology
, vol.154
, pp. 1914-1926
-
-
Bishop, A.1
House, D.2
Perkins, T.3
Baker, S.4
Kingsley, R.A.5
-
51
-
-
0023853960
-
Characterization of aromatic- and purine-dependent Salmonella typhimurium: attention, persistence, and ability to induce protective immunity in BALB/c mice
-
3276625, ().:–
-
O’Callaghan D, Maskell D, Liew FY, Easmon CS, Dougan G, (1988) Characterization of aromatic- and purine-dependent Salmonella typhimurium: attention, persistence, and ability to induce protective immunity in BALB/c mice. Infect Immun56: 419–423. 3276625
-
(1988)
Infect Immun
, vol.56
, pp. 419-423
-
-
O’Callaghan, D.1
Maskell, D.2
Liew, F.Y.3
Easmon, C.S.4
Dougan, G.5
-
52
-
-
0037408494
-
Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host
-
12704158, . ().:–
-
Barthel M, Hapfelmeier S, Quintanilla-Martinez L, Kremer M, Rohde M, et al. (2003) Pretreatment of mice with streptomycin provides a Salmonella enterica serovar Typhimurium colitis model that allows analysis of both pathogen and host. Infect Immun71: 2839–2858. 12704158
-
(2003)
Infect Immun
, vol.71
, pp. 2839-2858
-
-
Barthel, M.1
Hapfelmeier, S.2
Quintanilla-Martinez, L.3
Kremer, M.4
Rohde, M.5
-
53
-
-
73249140740
-
Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype
-
19901036, . ().:–
-
Kingsley RA, Msefula CL, Thomson NR, Kariuki S, Holt KE, et al. (2009) Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. Genome Res: 2279–2287. doi: 10.1101/gr.091017.10919901036
-
(2009)
Genome Res
, pp. 2279-2287
-
-
Kingsley, R.A.1
Msefula, C.L.2
Thomson, N.R.3
Kariuki, S.4
Holt, K.E.5
-
54
-
-
67749137754
-
Food poisoning due to Salmonella enterica serotype Weltevreden in Mangalore
-
19584510, ().:
-
Antony B, Dias M, Shetty AK, Rekha B, (2009) Food poisoning due to Salmonella enterica serotype Weltevreden in Mangalore. Indian J Med Microbiol27: 257. doi: 10.4103/0255-0857.5321119584510
-
(2009)
Indian J Med Microbiol
, vol.27
, pp. 257
-
-
Antony, B.1
Dias, M.2
Shetty, A.K.3
Rekha, B.4
-
55
-
-
77952757215
-
High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children
-
20509974, . ().:
-
Holt KE, Baker S, Dongol S, Basnyat B, Adhikari N, et al. (2010) High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children. BMC Infect Dis10: 144. doi: 10.1186/1471-2334-10-14420509974
-
(2010)
BMC Infect Dis
, vol.10
, pp. 144
-
-
Holt, K.E.1
Baker, S.2
Dongol, S.3
Basnyat, B.4
Adhikari, N.5
-
56
-
-
84856578549
-
Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission
-
22645647, . ().:
-
Baker S, Holt KE, Clements ACA, Karkey A, Arjyal A, et al. (2011) Combined high-resolution genotyping and geospatial analysis reveals modes of endemic urban typhoid fever transmission. Open Biol1: 110008. doi: 10.1098/rsob.11000822645647
-
(2011)
Open Biol
, vol.1
, pp. 110008
-
-
Baker, S.1
Holt, K.E.2
Clements, A.C.A.3
Karkey, A.4
Arjyal, A.5
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