Lactobacillus micheneri sp. nov., Lactobacillus timberlakei sp. nov. and Lactobacillus quenuiae sp. nov., lactic acid bacteria isolated from wild bees and flowers

International Journal of Systematic and Evolutionary Microbiology

Volumn 68, Issue 6, 2018, Pages 1879-1884

  McFrederick, Quinn S ^a   Vuong, Hoang Q ^a   Rothman, Jason A ^a  

^a UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Halictidae; Megachilidae; Native bee; Symbiont

Indexed keywords

FATTY ACID; PROTEIN; RNA 16S; BACTERIAL DNA;

ARTICLE; BACTERIUM ISOLATE; DNA DNA HYBRIDIZATION; FLOWER; GENETIC CODE; HONEYBEE; LACTIC ACID BACTERIUM; LACTOBACILLUS; LACTOBACILLUS APINORUM; LACTOBACILLUS KUNKEEI; LACTOBACILLUS MICHENERI; LACTOBACILLUS QUENUIAE; LACTOBACILLUS TIMBERLAKEI; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; ANIMAL; BACTERIUM IDENTIFICATION; BEE; CALIFORNIA; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; NUCLEIC ACID HYBRIDIZATION;

ANIMALS; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; BEES; CALIFORNIA; DNA, BACTERIAL; FATTY ACIDS; FLOWERS; LACTOBACILLUS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA;

EID: 85048032441     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijsem.0.002758     Document Type: Article

References (28)

1. Moran NA, Hansen AK, Powell JE, Sabree ZL. Distinctive gut microbiota of honey bees assessed using deep sampling from individual worker bees. PLoS One 2012;7:e36393.
2. Engel P, Martinson VG, Moran NA. Functional diversity within the simple gut microbiota of the honey bee. Proc Natl Acad Sci USA 2012;109:11002-11007.
3. Anderson KE, Rodrigues PA, Mott BM, Maes P, Corby-Harris V. Ecological succession in the honey bee gut: shift in Lactobacillus strain dominance during early adult development. Microb Ecol 2016;71:1008-1019.
4. Zheng H, Powell JE, Steele MI, Dietrich C, Moran NA. Honeybee gut microbiota promotes host weight gain via bacterial metabolism and hormonal signaling. Proc Natl Acad Sci USA 2017;114: 4775-4780.
5. Olofsson TC, Alsterfjord M, Nilson B, Butler E, Vásquez A. Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera. Int J Syst Evol Microbiol 2014;64:3109-3119.
6. Corby-Harris V, Maes P, Anderson KE. The bacterial communities associated with honey bee (Apis mellifera) foragers. PLoS One 2014;9:e95056.
7. Anderson KE, Sheehan TH, Mott BM, Maes P, Snyder L et al. Microbial ecology of the hive and pollination landscape: bacterial associates from floral nectar, the alimentary tract and stored food of honey bees (Apis mellifera). PLoS One 2013;8:e83125.
8. Endo A, Irisawa T, Futagawa-Endo Y, Takano K, du Toit M et al. Characterization and emended description of Lactobacillus kunkeei as a fructophilic lactic acid bacterium. Int J Syst Evol Microbiol 2012;62:500-504.
9. Endo A, Futagawa-Endo Y, Sakamoto M, Kitahara M, Dicks LM. Lactobacillus florum sp. nov., a fructophilic species isolated from flowers. Int J Syst Evol Microbiol 2010;60:2478-2482.
10. Kawasaki S, Kurosawa K, Miyazaki M, Sakamoto M, Ohkuma M et al. Lactobacillus ozensis sp. nov., isolated from mountain flowers. Int J Syst Evol Microbiol 2011;61:2435-2438.
11. Kawasaki S, Kurosawa K, Miyazaki M, Yagi C, Kitajima Y et al. Lactobacillus floricola sp. nov., lactic acid bacteria isolated from mountain flowers. Int J Syst Evol Microbiol 2011;61:1356-1359.
12. Techo S, Miyashita M, Shibata C, Tanaka N, Wisetkhan P et al. Lactobacillus ixorae sp. nov., isolated from a flower (West-Indian Jasmine). Int J Syst Evol Microbiol 2016;66:5500-5505.
13. McFrederick QS, Rehan SM. Characterization of pollen and bacterial community composition in brood provisions of a small carpenter bee. Mol Ecol 2016;25:2302-2311.
14. McFrederick QS, Thomas JM, Neff JL, Vuong HQ, Russell KA et al. Flowers and wild megachilid bees share microbes. Microb Ecol 2017;73:188-200.
15. McFrederick QS, Wcislo WT, Taylor DR, Ishak HD, Dowd SE et al. Environment or kin: whence do bees obtain acidophilic bacteria? Mol Ecol 2012;21:1754-1768.
16. McFrederick QS, Wcislo WT, Hout MC, Mueller UG. Host species and developmental stage, but not host social structure, affects bacterial community structure in socially polymorphic bees. FEMS Microbiol Ecol 2014;88:398-406.
17. Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 2004;32:1792-1797.
18. Stamatakis A. RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 2006;22:2688-2690.
19. Coil D, Jospin G, Darling AE. A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data. Bioinformatics 2015;31:587-589.
20. Aziz RK, Bartels D, Best AA, Dejongh M, Disz T et al. The RAST Server: rapid annotations using subsystems technology. BMC Genomics 2008;9:75.
21. Chun J, Oren A, Ventosa A, Christensen H, Arahal DR et al. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Int J Syst Evol Microbiol 2018;68: 461-466.
22. Varghese NJ, Mukherjee S, Ivanova N, Konstantinidis KT, Mavrommatis K et al. Microbial species delineation using whole genome sequences. Nucleic Acids Res 2015;43:6761-6771.
23. Kim M, Oh HS, Park SC, Chun J. Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes. Int J Syst Evol Microbiol 2014;64:346-351.
24. Konstantinidis KT, Ramette A, Tiedje JM. The bacterial species definition in the genomic era. Philos Trans R Soc Lond B Biol Sci 2006;361:1929-1940.
25. Maeno S, Tanizawa Y, Kanesaki Y, Kubota E, Kumar H et al. Genomic characterization of a fructophilic bee symbiont Lactobacillus kunkeei reveals its niche-specific adaptation. Syst Appl Microbiol 2016;39:516-526.
26. Cleenwerck I, Vandemeulebroecke K, Janssens D, Swings J. Reexamination of the genus Acetobacter, with descriptions of Acetobacter cerevisiae sp. nov. and Acetobacter malorum sp. nov. Int J Syst Evol Microbiol 2002;52:1551-1558.
27. Bauer AW, Kirby WM, Sherris JC, Turck M. Antibiotic susceptibility testing by a standardized single disk method. Am J Clin Pathol 1966;45:493-496.
28. Schön R, Groth I. Practical thin layer chromatography techniques for diaminopimelic acid and whole cell sugar analyses in the classification of environmental actinomycetes. J Basic Microbiol 2006; 46:243-249.