-
1
-
-
0000863663
-
Speciation phenomena in birds
-
Mayr, E. (1940) Speciation Phenomena in Birds. Am. Nat., 74, 249-278.
-
(1940)
Am. Nat
, vol.74
, pp. 249-278
-
-
Mayr, E.1
-
3
-
-
0029942146
-
Polyphasic taxonomy, a consensus approach to bacterial systematics
-
Vandamme, P., Pot, B., Gillis, M., de Vos, P., Kersters, K. and Swings, J. (1996) Polyphasic taxonomy, a consensus approach to bacterial systematics. Microbiol. Rev., 60, 407-438.
-
(1996)
Microbiol. Rev
, vol.60
, pp. 407-438
-
-
Vandamme, P.1
Pot, B.2
Gillis, M.3
De Vos, P.4
Kersters, K.5
Swings, J.6
-
4
-
-
14044262978
-
Genomic insights that advance the species definition for prokaryotes
-
Konstantinidis, K.T. and Tiedje, J.M. (2005) Genomic insights that advance the species definition for prokaryotes. Proc. Natl. Acad. Sci. U.S.A., 102, 2567-2572.
-
(2005)
Proc. Natl. Acad. Sci. U.S.A
, vol.102
, pp. 2567-2572
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
5
-
-
84861898310
-
IMG: The Integrated Microbial Genomes database and comparative analysis system
-
Markowitz, V.M., Chen, I.-M.A., Palaniappan, K., Chu, K., Szeto, E., Grechkin, Y., Ratner, A., Jacob, B., Huang, J., Williams, P. et al. (2012) IMG: the Integrated Microbial Genomes database and comparative analysis system. Nucleic Acids Res., 40, D115-D122.
-
(2012)
Nucleic Acids Res
, vol.40
, pp. D115-D122
-
-
Markowitz, V.M.1
Chen, I.-M.A.2
Palaniappan, K.3
Chu, K.4
Szeto, E.5
Grechkin, Y.6
Ratner, A.7
Jacob, B.8
Huang, J.9
Williams, P.10
-
7
-
-
67650447476
-
Fifteen years of microbial genomics: Meeting the challenges and fulfilling the dream
-
Kyrpides, N.C. (2009) Fifteen years of microbial genomics: meeting the challenges and fulfilling the dream. Nat. Biotechnol., 27, 627-632.
-
(2009)
Nat. Biotechnol
, vol.27
, pp. 627-632
-
-
Kyrpides, N.C.1
-
8
-
-
72949101201
-
A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea
-
Wu, D., Hugenholtz, P., Mavromatis, K., Pukall, R., Dalin, E., Ivanova, N.N., Kunin, V., Goodwin, L., Wu, M., Tindall, B.J. et al. (2009) A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. Nature, 462, 1056-1060.
-
(2009)
Nature
, vol.462
, pp. 1056-1060
-
-
Wu, D.1
Hugenholtz, P.2
Mavromatis, K.3
Pukall, R.4
Dalin, E.5
Ivanova, N.N.6
Kunin, V.7
Goodwin, L.8
Wu, M.9
Tindall, B.J.10
-
9
-
-
58149200954
-
Database resources of the national center for biotechnology information
-
Sayers, E.W., Barrett, T., Benson, D.A., Bryant, S.H., Canese, K., Chetvernin, V., Church, D.M., DiCuccio, M., Edgar, R., Federhen, S. et al. (2009) Database resources of the National Center for Biotechnology Information. Nucleic Acids Res., 37, D5-D15.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D5-D15
-
-
Sayers, E.W.1
Barrett, T.2
Benson, D.A.3
Bryant, S.H.4
Canese, K.5
Chetvernin, V.6
Church, D.M.7
DiCuccio, M.8
Edgar, R.9
Federhen, S.10
-
10
-
-
58149185141
-
GenBank
-
Benson, D.A., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. and Sayers, E.W. (2009) GenBank. Nucleic Acids Res., 37, D26-D31.
-
(2009)
Nucleic Acids Res
, vol.37
, pp. D26-D31
-
-
Benson, D.A.1
Karsch-Mizrachi, I.2
Lipman, D.J.3
Ostell, J.4
Sayers, E.W.5
-
11
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J. Mol. Biol., 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
12
-
-
0031889897
-
Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins
-
Collins, M.D. and East, A.K. (1998) Phylogeny and taxonomy of the food-borne pathogen Clostridium botulinum and its neurotoxins. J. Appl. Microbiol., 84, 5-17.
-
(1998)
J. Appl. Microbiol
, vol.84
, pp. 5-17
-
-
Collins, M.D.1
East, A.K.2
-
13
-
-
33846598840
-
Genetic diversity among Botulinum Neurotoxin-producing clostridial strains
-
Hill, K.K., Smith, T.J., Helma, C.H., Ticknor, L.O., Foley, B.T., Svensson, R.T., Brown, J.L., Johnson, E.A., Smith, L.A., Okinaka, R.T. et al. (2007) Genetic diversity among Botulinum Neurotoxin-producing clostridial strains. J. Bacteriol., 189, 818-832.
-
(2007)
J. Bacteriol
, vol.189
, pp. 818-832
-
-
Hill, K.K.1
Smith, T.J.2
Helma, C.H.3
Ticknor, L.O.4
Foley, B.T.5
Svensson, R.T.6
Brown, J.L.7
Johnson, E.A.8
Smith, L.A.9
Okinaka, R.T.10
-
14
-
-
84976668743
-
Algorithm 457: Finding all cliques of an undirected graph
-
Bron, C. and Kerbosch, J. (1973) Algorithm 457: finding all cliques of an undirected graph. Commun ACM, 16, 575-577.
-
(1973)
Commun ACM
, vol.16
, pp. 575-577
-
-
Bron, C.1
Kerbosch, J.2
-
15
-
-
0030968986
-
Ribotypes and virulence gene polymorphisms suggest three distinct Listeria monocytogenes lineages with differences in pathogenic potential
-
Wiedmann, M., Bruce, J.L., Keating, C., Johnson, A.E., McDonough, P.L. and Batt, C.A. (1997) Ribotypes and virulence gene polymorphisms suggest three distinct Listeria monocytogenes lineages with differences in pathogenic potential. Infect. Immun., 65, 2707-2716.
-
(1997)
Infect. Immun
, vol.65
, pp. 2707-2716
-
-
Wiedmann, M.1
Bruce, J.L.2
Keating, C.3
Johnson, A.E.4
McDonough, P.L.5
Batt, C.A.6
-
16
-
-
84857947717
-
FSL J1-208, a virulent uncommon phylogenetic lineage IV Listeria monocytogenes strain with a small chromosome size and a putative virulence plasmid carrying internalin-like genes
-
Den Bakker, H.C., Bowen, B.M., Rodriguez-Rivera, L.D. and Wiedmann, M. (2012) FSL J1-208, a virulent uncommon phylogenetic lineage IV Listeria monocytogenes strain with a small chromosome size and a putative virulence plasmid carrying internalin-like genes. Appl. Environ. Microbiol., 78, 1876-1889.
-
(2012)
Appl. Environ. Microbiol
, vol.78
, pp. 1876-1889
-
-
Den Bakker, H.C.1
Bowen, B.M.2
Rodriguez-Rivera, L.D.3
Wiedmann, M.4
-
17
-
-
84883464181
-
Accurate and universal delineation of prokaryotic species
-
Mende, D.R., Sunagawa, S., Zeller, G. and Bork, P. (2013) Accurate and universal delineation of prokaryotic species. Nat. Methods, 10, 881-884.
-
(2013)
Nat. Methods
, vol.10
, pp. 881-884
-
-
Mende, D.R.1
Sunagawa, S.2
Zeller, G.3
Bork, P.4
-
18
-
-
10844226341
-
Identification and discrimination of Burkholderia pseudomallei, B. Mallei, and B. Thailandensis by real-time PCR targeting type III secretion system genes
-
Thibault, F.M., Valade, E. and Vidal, D.R. (2004) Identification and discrimination of Burkholderia pseudomallei, B. mallei, and B. thailandensis by real-time PCR targeting type III secretion system genes. J. Clin. Microbiol., 42, 5871-5874.
-
(2004)
J. Clin. Microbiol
, vol.42
, pp. 5871-5874
-
-
Thibault, F.M.1
Valade, E.2
Vidal, D.R.3
-
19
-
-
33947191173
-
Identification of Burkholderia pseudomallei and related bacteria by multiple-locus sequence typing-derived PCR and real-time PCR
-
Wattiau, P., Hessche, M.V., Neubauer, H., Zachariah, R., Wernery, U. and Imberechts, H. (2007) Identification of Burkholderia pseudomallei and related bacteria by multiple-locus sequence typing-derived PCR and real-time PCR. J. Clin. Microbiol., 45, 1045-1048.
-
(2007)
J. Clin. Microbiol
, vol.45
, pp. 1045-1048
-
-
Wattiau, P.1
Hessche, M.V.2
Neubauer, H.3
Zachariah, R.4
Wernery, U.5
Imberechts, H.6
-
20
-
-
77957930925
-
Molecular Insights into Burkholderia pseudomallei and Burkholderia mallei Pathogenesis
-
Galyov, E.E., Brett, P.J. and DeShazer, D. (2010) Molecular Insights into Burkholderia pseudomallei and Burkholderia mallei Pathogenesis. Annu. Rev. Microbiol., 64, 495-517.
-
(2010)
Annu. Rev. Microbiol
, vol.64
, pp. 495-517
-
-
Galyov, E.E.1
Brett, P.J.2
DeShazer, D.3
-
21
-
-
13644267695
-
Detection and differentiation of Burkholderia pseudomallei, Burkholderia mallei and Burkholderia thailandensis by multiplex PCR
-
Lee, M.-A., Wang, D. and Yap, E.H. (2005) Detection and differentiation of Burkholderia pseudomallei, Burkholderia mallei and Burkholderia thailandensis by multiplex PCR. FEMS Immunol. Med. Microbiol., 43, 413-417.
-
(2005)
FEMS Immunol. Med. Microbiol
, vol.43
, pp. 413-417
-
-
Lee, M.-A.1
Wang, D.2
Yap, E.H.3
-
22
-
-
77955709379
-
Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements
-
Losada, L., Ronning, C.M., DeShazer, D., Woods, D., Fedorova, N., Kim, H.S., Shabalina, S.A., Pearson, T.R., Brinkac, L., Tan, P. et al. (2010) Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements. Genome Biol. Evol., 2, 102-116.
-
(2010)
Genome Biol. Evol
, vol.2
, pp. 102-116
-
-
Losada, L.1
Ronning, C.M.2
DeShazer, D.3
Woods, D.4
Fedorova, N.5
Kim, H.S.6
Shabalina, S.A.7
Pearson, T.R.8
Brinkac, L.9
Tan, P.10
-
23
-
-
9244227067
-
Population structure and evolution of the Bacillus cereus group
-
Priest, F.G., Barker, M., Baillie, L.W.J., Holmes, E.C. and Maiden, M.C.J. (2004) Population structure and evolution of the Bacillus cereus group. J. Bacteriol., 186, 7959-7970.
-
(2004)
J. Bacteriol
, vol.186
, pp. 7959-7970
-
-
Priest, F.G.1
Barker, M.2
Baillie, L.W.J.3
Holmes, E.C.4
Maiden, M.C.J.5
-
24
-
-
33646245694
-
Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis
-
Han, C.S., Xie, G., Challacombe, J.F., Altherr, M.R., Bhotika, S.S., Brown, N., Bruce, D., Campbell, C.S., Campbell, M.L., Chen, J. et al. (2006) Pathogenomic sequence analysis of Bacillus cereus and Bacillus thuringiensis isolates closely related to Bacillus anthracis. J. Bacteriol., 188, 3382-3390.
-
(2006)
J. Bacteriol
, vol.188
, pp. 3382-3390
-
-
Han, C.S.1
Xie, G.2
Challacombe, J.F.3
Altherr, M.R.4
Bhotika, S.S.5
Brown, N.6
Bruce, D.7
Campbell, C.S.8
Campbell, M.L.9
Chen, J.10
-
25
-
-
84881665892
-
Description of Bacillus toyonensis sp. Nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations
-
Jiménez, G., Urdiain, M., Cifuentes, A., Lopez-Lopez, A., Blanch, A.R., Tamames, J., Kämpfer, P., Kolstø, A.-B., Ramon, D., Martinez, J.F. et al. (2013) Description of Bacillus toyonensis sp. nov., a novel species of the Bacillus cereus group, and pairwise genome comparisons of the species of the group by means of ANI calculations. Syst. Appl. Microbiol., 36, 383-391.
-
(2013)
Syst. Appl. Microbiol
, vol.36
, pp. 383-391
-
-
Jiménez, G.1
Urdiain, M.2
Cifuentes, A.3
Lopez-Lopez, A.4
Blanch, A.R.5
Tamames, J.6
Kämpfer, P.7
Kolstø, A.-B.8
Ramon, D.9
Martinez, J.F.10
-
26
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter, M. and Rossell o-Mora, R. (2009) Shifting the genomic gold standard for the prokaryotic species definition. Proc. Natl. Acad. Sci., 106, 19126-19131.
-
(2009)
Proc. Natl. Acad. Sci
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rossell O-Mora, R.2
-
27
-
-
84859436386
-
International committee on systematics of prokaryotesxiith international (iums) congress of microbiology and applied bacteriology minutes of the meetings, 3, 4, 5 and 7 August 2008, istanbul, Turkey
-
Labeda, D. and Oren, A. (2011) International Committee on Systematics of ProkaryotesXIIth International (IUMS) Congress of Microbiology and Applied Bacteriology Minutes of the Meetings, 3, 4, 5 and 7 August 2008, Istanbul, Turkey. Int. J. Syst. Evol. Microbiol., 61, 2781-2789.
-
(2011)
Int. J. Syst. Evol. Microbiol
, vol.61
, pp. 2781-2789
-
-
Labeda, D.1
Oren, A.2
-
28
-
-
0033022027
-
Caldicellulosiruptor kristjanssonii sp. Nov., a cellulolytic, extremely thermophilic, anaerobic bacterium
-
Bredholt, S., Sonne-Hansen, J., Nielsen, P., Mathrani, I.M. and Ahring, B.K. (1999) Caldicellulosiruptor kristjanssonii sp. nov., a cellulolytic, extremely thermophilic, anaerobic bacterium. Int. J. Syst. Bacteriol., 49, 991-996.
-
(1999)
Int. J. Syst. Bacteriol
, vol.49
, pp. 991-996
-
-
Bredholt, S.1
Sonne-Hansen, J.2
Nielsen, P.3
Mathrani, I.M.4
Ahring, B.K.5
-
30
-
-
84896137621
-
A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature
-
Marakeby, H., Badr, E., Torkey, H., Song, Y., Leman, S., Monteil, C.L., Heath, L.S. and Vinatzer, B.A. (2014) A system to automatically classify and name any individual genome-sequenced organism independently of current biological classification and nomenclature. PLoS One, 9, e89142.
-
(2014)
PLoS One
, vol.9
, pp. e89142
-
-
Marakeby, H.1
Badr, E.2
Torkey, H.3
Song, Y.4
Leman, S.5
Monteil, C.L.6
Heath, L.S.7
Vinatzer, B.A.8
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