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Volumn 39, Issue 8, 2016, Pages 516-526

Genomic characterization of a fructophilic bee symbiont Lactobacillus kunkeei reveals its niche-specific adaptation

Author keywords

adhE; Comparative genomics; Fructobacillus; Fructophilic lactic acid bacteria; Lactobacillus kunkeei

Indexed keywords

ALCOHOL DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; FRUCTOSE; GENOMIC DNA; BACTERIAL DNA;

EID: 84996798715     PISSN: 07232020     EISSN: 16180984     Source Type: Journal    
DOI: 10.1016/j.syapm.2016.09.006     Document Type: Article
Times cited : (52)

References (36)
  • 1
    • 0030878814 scopus 로고    scopus 로고
    • Comparative study of alcohol dehydrogenase activity in flor yeast extracts
    • [1] Blandino, A., Caro, I., Cantero, D., Comparative study of alcohol dehydrogenase activity in flor yeast extracts. Biotechnol. Lett. 19 (1997), 651–654.
    • (1997) Biotechnol. Lett. , vol.19 , pp. 651-654
    • Blandino, A.1    Caro, I.2    Cantero, D.3
  • 2
    • 84888227953 scopus 로고    scopus 로고
    • GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis
    • [2] Contreras-Moreira, B., Vinuesa, P., GET_HOMOLOGUES, a versatile software package for scalable and robust microbial pangenome analysis. Appl. Environ. Microbiol. 79 (2013), 7696–7701.
    • (2013) Appl. Environ. Microbiol. , vol.79 , pp. 7696-7701
    • Contreras-Moreira, B.1    Vinuesa, P.2
  • 4
    • 0031801913 scopus 로고    scopus 로고
    • Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations
    • [4] Edwards, C.G., Haag, K.M., Collins, M.D., Hutson, R.A., Huang, Y.C., Lactobacillus kunkeei sp. nov.: a spoilage organism associated with grape juice fermentations. J. Appl. Microbiol. 84 (1998), 698–702.
    • (1998) J. Appl. Microbiol. , vol.84 , pp. 698-702
    • Edwards, C.G.1    Haag, K.M.2    Collins, M.D.3    Hutson, R.A.4    Huang, Y.C.5
  • 5
    • 70449732185 scopus 로고    scopus 로고
    • Isolation and characterization of fructophilic lactic acid bacteria from fructose-rich niches
    • [5] Endo, A., Futagawa-Endo, Y., Dicks, L.M., Isolation and characterization of fructophilic lactic acid bacteria from fructose-rich niches. Syst. Appl. Microbiol. 32 (2009), 593–600.
    • (2009) Syst. Appl. Microbiol. , vol.32 , pp. 593-600
    • Endo, A.1    Futagawa-Endo, Y.2    Dicks, L.M.3
  • 8
    • 17644395922 scopus 로고    scopus 로고
    • Monitoring the lactic acid bacterial diversity during shochu fermentation by PCR-denaturing gradient gel electrophoresis
    • [8] Endo, A., Okada, S., Monitoring the lactic acid bacterial diversity during shochu fermentation by PCR-denaturing gradient gel electrophoresis. J. Biosci. Bioeng. 99 (2005), 216–221.
    • (2005) J. Biosci. Bioeng. , vol.99 , pp. 216-221
    • Endo, A.1    Okada, S.2
  • 9
    • 53749091019 scopus 로고    scopus 로고
    • Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov
    • [9] Endo, A., Okada, S., Reclassification of the genus Leuconostoc and proposals of Fructobacillus fructosus gen nov., comb. nov., Fructobacillus durionis comb. nov., Fructobacillus ficulneus comb. nov. and Fructobacillus pseudoficulneus comb. nov. Int. J. Syst. Evol. Microbiol. 58 (2008), 2195–2205.
    • (2008) Int. J. Syst. Evol. Microbiol. , vol.58 , pp. 2195-2205
    • Endo, A.1    Okada, S.2
  • 10
    • 84881670054 scopus 로고    scopus 로고
    • Honeybees and beehives are rich sources for fructophilic lactic acid bacteria
    • [10] Endo, A., Salminen, S., Honeybees and beehives are rich sources for fructophilic lactic acid bacteria. Syst. Appl. Microbiol. 36 (2013), 444–448.
    • (2013) Syst. Appl. Microbiol. , vol.36 , pp. 444-448
    • Endo, A.1    Salminen, S.2
  • 11
    • 84893937970 scopus 로고    scopus 로고
    • Fructophilic characteristics of Fructobacillus spp. may be due to the absence of an alcohol/acetaldehyde dehydrogenase gene (adhE)
    • [11] Endo, A., Tanaka, N., Oikawa, Y., Okada, S., Dicks, L., Fructophilic characteristics of Fructobacillus spp. may be due to the absence of an alcohol/acetaldehyde dehydrogenase gene (adhE). Curr. Microbiol. 68 (2014), 531–535.
    • (2014) Curr. Microbiol. , vol.68 , pp. 531-535
    • Endo, A.1    Tanaka, N.2    Oikawa, Y.3    Okada, S.4    Dicks, L.5
  • 14
    • 0033955093 scopus 로고    scopus 로고
    • Influence of ethanol on lead distribution and biochemical changes in rats exposed to lead
    • [14] Gupta, V., Gill, K.D., Influence of ethanol on lead distribution and biochemical changes in rats exposed to lead. Alcohol 20 (2000), 9–17.
    • (2000) Alcohol , vol.20 , pp. 9-17
    • Gupta, V.1    Gill, K.D.2
  • 16
    • 84891898361 scopus 로고    scopus 로고
    • Lactobacillus apis sp. nov., from the stomach of honeybees (Apis mellifera), having an in vitro inhibitory effect on the causative agents of American and European foulbrood
    • [16] Killer, J., Dubna, S., Sedlacek, I., Svec, P., Lactobacillus apis sp. nov., from the stomach of honeybees (Apis mellifera), having an in vitro inhibitory effect on the causative agents of American and European foulbrood. Int. J. Syst. Evol. Microbiol. 64 (2014), 152–157.
    • (2014) Int. J. Syst. Evol. Microbiol. , vol.64 , pp. 152-157
    • Killer, J.1    Dubna, S.2    Sedlacek, I.3    Svec, P.4
  • 17
    • 21144439354 scopus 로고    scopus 로고
    • Cloning and characterization of the bifunctional alcohol/acetaldehyde dehydrogenase gene (adhE) in Leuconostoc mesenteroides isolated from kimchi
    • [17] Koo, O.K., Jeong, D.W., Lee, J.M., Kim, M.J., Lee, J.H., Chang, H.C., Kim, J.H., Lee, H.J., Cloning and characterization of the bifunctional alcohol/acetaldehyde dehydrogenase gene (adhE) in Leuconostoc mesenteroides isolated from kimchi. Biotechnol. Lett. 27 (2005), 505–510.
    • (2005) Biotechnol. Lett. , vol.27 , pp. 505-510
    • Koo, O.K.1    Jeong, D.W.2    Lee, J.M.3    Kim, M.J.4    Lee, J.H.5    Chang, H.C.6    Kim, J.H.7    Lee, H.J.8
  • 19
    • 84895734985 scopus 로고    scopus 로고
    • Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment
    • [19] Mendes-Soares, H., Suzuki, H., Hickey, R.J., Forney, L.J., Comparative functional genomics of Lactobacillus spp. reveals possible mechanisms for specialization of vaginal lactobacilli to their environment. J. Bacteriol. 196 (2014), 1458–1470.
    • (2014) J. Bacteriol. , vol.196 , pp. 1458-1470
    • Mendes-Soares, H.1    Suzuki, H.2    Hickey, R.J.3    Forney, L.J.4
  • 20
    • 77957825024 scopus 로고    scopus 로고
    • Cooperation of β-galactosidase and β-N-acetylhexosaminidase from bifidobacteria in assimilation of human milk oligosaccharides with type 2 structure
    • [20] Miwa, M., Horimoto, T., Kiyohara, M., Katayama, T., Kitaoka, M., Ashida, H., Yamamoto, K., Cooperation of β-galactosidase and β-N-acetylhexosaminidase from bifidobacteria in assimilation of human milk oligosaccharides with type 2 structure. Glycobiology 20 (2010), 1402–1409.
    • (2010) Glycobiology , vol.20 , pp. 1402-1409
    • Miwa, M.1    Horimoto, T.2    Kiyohara, M.3    Katayama, T.4    Kitaoka, M.5    Ashida, H.6    Yamamoto, K.7
  • 21
    • 34547588704 scopus 로고    scopus 로고
    • KAAS: an automatic genome annotation and pathway reconstruction server
    • [21] Moriya, Y., Itoh, M., Okuda, S., Yoshizawa, A.C., Kanehisa, M., KAAS: an automatic genome annotation and pathway reconstruction server. Nucleic Acids Res. 35 (2007), W182–W185.
    • (2007) Nucleic Acids Res. , vol.35 , pp. W182-W185
    • Moriya, Y.1    Itoh, M.2    Okuda, S.3    Yoshizawa, A.C.4    Kanehisa, M.5
  • 22
    • 84907046552 scopus 로고    scopus 로고
    • Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera
    • [22] Olofsson, T.C., Alsterfjord, M., Nilson, B., Butler, E., Vasquez, A., Lactobacillus apinorum sp. nov., Lactobacillus mellifer sp. nov., Lactobacillus mellis sp. nov., Lactobacillus melliventris sp. nov., Lactobacillus kimbladii sp. nov., Lactobacillus helsingborgensis sp. nov. and Lactobacillus kullabergensis sp. nov., isolated from the honey stomach of the honeybee Apis mellifera. Int. J. Syst. Evol. Microbiol. 64 (2014), 3109–3119.
    • (2014) Int. J. Syst. Evol. Microbiol. , vol.64 , pp. 3109-3119
    • Olofsson, T.C.1    Alsterfjord, M.2    Nilson, B.3    Butler, E.4    Vasquez, A.5
  • 23
    • 84937040910 scopus 로고    scopus 로고
    • CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes
    • [23] Parks, D.H., Imelfort, M., Skennerton, C.T., Hugenholtz, P., Tyson, G.W., CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes. Genome Res. 25 (2015), 1043–1055.
    • (2015) Genome Res. , vol.25 , pp. 1043-1055
    • Parks, D.H.1    Imelfort, M.2    Skennerton, C.T.3    Hugenholtz, P.4    Tyson, G.W.5
  • 24
    • 84931404994 scopus 로고    scopus 로고
    • The paratransgenic potential of Lactobacillus kunkeei in the honey bee Apis mellifera
    • [24] Rangberg, A., Mathiesen, G., Amdam, G.V., Diep, D.B., The paratransgenic potential of Lactobacillus kunkeei in the honey bee Apis mellifera. Benef. Microbes 6 (2015), 513–523.
    • (2015) Benef. Microbes , vol.6 , pp. 513-523
    • Rangberg, A.1    Mathiesen, G.2    Amdam, G.V.3    Diep, D.B.4
  • 26
    • 84901417347 scopus 로고    scopus 로고
    • Prokka: rapid prokaryotic genome annotation
    • [26] Seemann, T., Prokka: rapid prokaryotic genome annotation. Bioinformatics 30 (2014), 2068–2069.
    • (2014) Bioinformatics , vol.30 , pp. 2068-2069
    • Seemann, T.1
  • 27
    • 84979862576 scopus 로고    scopus 로고
    • Functionally structured genomes in Lactobacillus kunkeei colonizing the honey crop and food products of honeybees and stingless bees
    • [27] Tamarit, D., Ellegaard, K.M., Wikander, J., Olofsson, T., Vasquez, A., Andersson, S.G., Functionally structured genomes in Lactobacillus kunkeei colonizing the honey crop and food products of honeybees and stingless bees. Genome Biol. Evol. 7 (2015), 1455–1473.
    • (2015) Genome Biol. Evol. , vol.7 , pp. 1455-1473
    • Tamarit, D.1    Ellegaard, K.M.2    Wikander, J.3    Olofsson, T.4    Vasquez, A.5    Andersson, S.G.6
  • 29
    • 84925685116 scopus 로고    scopus 로고
    • Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage
    • [29] Tanizawa, Y., Tohno, M., Kaminuma, E., Nakamura, Y., Arita, M., Complete genome sequence and analysis of Lactobacillus hokkaidonensis LOOC260T, a psychrotrophic lactic acid bacterium isolated from silage. BMC Genomics, 16, 2015, 1.
    • (2015) BMC Genomics , vol.16 , pp. 1
    • Tanizawa, Y.1    Tohno, M.2    Kaminuma, E.3    Nakamura, Y.4    Arita, M.5
  • 30
    • 0033956060 scopus 로고    scopus 로고
    • The COG database: a tool for genome-scale analysis of protein functions and evolution
    • [30] Tatusov, R.L., Galperin, M.Y., Natale, D.A., Koonin, E.V., The COG database: a tool for genome-scale analysis of protein functions and evolution. Nucleic Acids Res. 28 (2000), 33–36.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 33-36
    • Tatusov, R.L.1    Galperin, M.Y.2    Natale, D.A.3    Koonin, E.V.4
  • 33
    • 84882705545 scopus 로고    scopus 로고
    • Microbial gut diversity of Africanized and European honey bee larval instars
    • [33] Vojvodic, S., Rehan, S.M., Anderson, K.E., Microbial gut diversity of Africanized and European honey bee larval instars. PLoS One, 8, 2013, e72106.
    • (2013) PLoS One , vol.8 , pp. e72106
    • Vojvodic, S.1    Rehan, S.M.2    Anderson, K.E.3
  • 34
    • 33747682944 scopus 로고    scopus 로고
    • Variations in the energy metabolism of biotechnologically relevant heterofermentative lactic acid bacteria during growth on sugars and organic acids
    • [34] Zaunmuller, T., Eichert, M., Richter, H., Unden, G., Variations in the energy metabolism of biotechnologically relevant heterofermentative lactic acid bacteria during growth on sugars and organic acids. Appl. Microbiol. Biotechnol. 72 (2006), 421–429.
    • (2006) Appl. Microbiol. Biotechnol. , vol.72 , pp. 421-429
    • Zaunmuller, T.1    Eichert, M.2    Richter, H.3    Unden, G.4
  • 35
    • 43149115851 scopus 로고    scopus 로고
    • Velvet: algorithms for de novo short read assembly using de Bruijn graphs
    • [35] Zerbino, D.R., Birney, E., Velvet: algorithms for de novo short read assembly using de Bruijn graphs. Genome Res. 18 (2008), 821–829.
    • (2008) Genome Res. , vol.18 , pp. 821-829
    • Zerbino, D.R.1    Birney, E.2
  • 36
    • 84936991306 scopus 로고    scopus 로고
    • Cofactor specificity of the bifunctional alcohol and aldehyde dehydrogenase (AdhE) in wild-type and mutant Clostridium thermocellum and Thermoanaerobacterium saccharolyticum
    • [36] Zheng, T., Olson, D.G., Tian, L., Bomble, Y.J., Himmel, M.E., Lo, J., Hon, S., Shaw, A.J., van Dijken, J.P., Lynd, L.R., Cofactor specificity of the bifunctional alcohol and aldehyde dehydrogenase (AdhE) in wild-type and mutant Clostridium thermocellum and Thermoanaerobacterium saccharolyticum. J. Bacteriol. 197 (2015), 2610–2619.
    • (2015) J. Bacteriol. , vol.197 , pp. 2610-2619
    • Zheng, T.1    Olson, D.G.2    Tian, L.3    Bomble, Y.J.4    Himmel, M.E.5    Lo, J.6    Hon, S.7    Shaw, A.J.8    van Dijken, J.P.9    Lynd, L.R.10


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