A new phospholipase A2 isolated from the sea anemone Urticina crassicornis - Its primary structure and phylogenetic classification

FEBS Journal

Volumn 277, Issue 12, 2010, Pages 2641-2653

  Razpotnik, Andrej ^a   Križaj, Igor ^b   Šribar, Jernej ^b   Kordiš, Dušan ^b   MačEk, Peter ^a   Frangež, Robert ^a   Kem, William R ^c   Turk, Tom ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

^b JO EF STEFAN INSTITUTE   (Slovenia)

^c UNIVERSITY OF FLORIDA COLLEGE OF MEDICINE   (United States)

Author keywords

Enzymatic activity; Phospholipase A2; Phylogenetic classification; Sea anemone; Sequence; Venom

Indexed keywords

PHOSPHOLIPASE A2;

AMINO ACID SEQUENCE; AMINO TERMINAL SEQUENCE; ARTICLE; CARBOXY TERMINAL SEQUENCE; CONTROLLED STUDY; ENZYME ACTIVITY; EVOLUTIONARY ADAPTATION; HEMOLYSIS; IONIC STRENGTH; MARINE ENVIRONMENT; MOLECULAR PHYLOGENY; NEMATOSTELLA VECTENSIS; NEUROTOXICITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; PROTEIN FOLDING; SEA ANEMONE; SEQUENCE HOMOLOGY; URTICINA CRASSICORNIS; ANIMAL; CHEMISTRY; ENZYMOLOGY; METABOLISM; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; SEQUENCE ALIGNMENT;

AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; EVOLUTION, MOLECULAR; MOLECULAR SEQUENCE DATA; PHOSPHOLIPASES A2; PHYLOGENY; SEA ANEMONES; SEQUENCE ALIGNMENT;

EID: 85047685005     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2010.07674.x     Document Type: Article

References (49)

1. 2 biochemistry. Cardiovasc Drugs Ther 23, 49 59.
2. 2 (AdPLA). J Biol Chem 283, 25428 25436.
3. 2 in cnidaria. Comp Biochem Physiol B Biochem Mol Biol 139, 731 735.
4. 2 in porifera. Comp Biochem Physiol B Biochem Mol Biol 137, 413 420.
5. 2 from the crown-of-thorns starfish (Acanthaster planci) venom. Toxicon 36, 589 599.
6. 2 from the crown-of-thorns starfish Acanthaster planci venom. Comp Biochem Physiol B Biochem Mol Biol 143, 54 60.
7. Kishimura H, Ojima T, Tanaka H, Hayashi K Nishita K (2000) Amino acid sequence of phospholipase A(2) from the pyloric ceca of starfish Asterina pectinifera. Fish Sci 66, 104 109.
8. 2 from the pyloric ceca of the starfish Asterina pectinifera. Comp Biochem Physiol B Biochem Mol Biol 126, 579 586.
9. 2 isolated from the venom of the marine snail Conus magus. J Biol Chem 270, 3518 3526.
10. Kini RM (1997) Venom Phospholipase A2 Enzymes: Structure, Function and Mechanism. Wiley
11. 2 enzymes. Toxicon 42, 827 840.
12. Valentin E Lambeau G (2000) What can venom phospholipases A(2) tell us about the functional diversity of mammalian secreted phospholipases A(2)? Biochimie 82, 815 831.
13. 2. Toxicon 50, 871 892.
14. Hessinger DA Lenhoff HM (1976) Membrane structure and function. Mechanism of hemolysis induced by nematocyst venom: roles of phospholipase A and direct lytic factor. Arch Biochem Biophys 173, 603 613.
15. Galettis P Norton RS (1990) Biochemical and pharmacological studies of the mechanism of action of tenebrosin-C, a cardiac stimulatory and haemolytic protein from the sea anemone, Actinia tenebrosa. Toxicon 28, 695 706.
16. 2 and co-lytic factor from sea anemone (Aiptasia pallida) nematocyst venom. Toxicon 37, 1779 1796.
17. 2 component of sea anemone (Aiptasia pallida) nematocyst venom. Toxicon 38, 931 943.
18. Marino A, Valveri V, Muia C, Crupi R, Rizzo G, Musci G La SG (2004) Cytotoxicity of the nematocyst venom from the sea anemone Aiptasia mutabilis. Comp Biochem Physiol C Toxicol Pharmacol 139, 295 301.
19. Martins RD, Alves RS, Martins AM, Barbosa PS, Evangelista JS, Evangelista JJ, Ximenes RM, Toyama MH, Toyama DO, Souza AJ et al. (2009) Purification and characterization of the biological effects of phospholipase A(2) from sea anemone Bunodosoma caissarum. Toxicon 54, 413 420.
20. 2 from the cnidarian Adamsia carciniopados. Comp Biochem Physiol B Biochem Mol Biol 132, 571 578.
21. Putnam NH, Srivastava M, Hellsten U, Dirks B, Chapman J, Salamov A, Terry A, Shapiro H, Lindquist E, Kapitonov VV et al. (2007) Sea anemone genome reveals ancestral eumetazoan gene repertoire and genomic organization. Science 317, 86 94.
22. Nevalainen TJ (2008) Phospholipases A(2) in the genome of the sea anemone Nematostella vectensis. Comp Biochem Physiol D Genomics Proteomics 3, 226 233.
23. Tabor S Richardson CC (1990) DNA sequence analysis with a modified bacteriophage T7 DNA polymerase. Effect of pyrophosphorolysis and metal ions. J Biol Chem 265, 8322 8328.
24. Prijatelj P, Vardjan N, Rowan EG, Krizaj I Pungercar J (2006) Binding to the high-affinity M-type receptor for secreted phospholipases A(2) is not obligatory for the presynaptic neurotoxicity of ammodytoxin A. Biochimie 88, 1425 1433.
25. Anderluh G, Gokce I Lakey JH (2003) Expression of proteins using the third domain of the Escherichia coli periplasmic-protein TolA as a fusion partner. Protein Expr Purif 28, 173 181.
26. Bendtsen JD, Nielsen H, von Heijne G Brunak S (2004) Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340, 783 795.
27. 2 complexed with a substrate-derived inhibitor. Nature 347, 689 691.
28. 2 from bovine pancreas and Crotalus atrox venom. J Biol Chem 260, 11627 11634.
29. 2. Toxicon 36, 75 92.
30. 2 engineering. The roles of disulfide bonds in structure, conformational stability, and catalytic function. Biochemistry 34, 15307 15314.
31. 2 engineering. Deletion of the C-terminus segment changes substrate specificity and uncouples calcium and substrate binding at the zwitterionic interface. Biochemistry 35, 12164 12174.
32. 2 into porcine pancreatic isozyme. The effects on folding, stability and enzymatic properties. Eur J Biochem 261, 197 207.
33. 2 homologue from Micrurus corallinus (coral snake) venom gland. Toxicon 42, 249 255.
34. Sher D, Knebel A, Bsor T, Nesher N, Tal T, Morgenstern D, Cohen E, Fishman Y Zlotkin E (2005) Toxic polypeptides of the hydra - a bioinformatic approach to cnidarian allomones. Toxicon 45, 865 879.
35. Lotan A, Fishman L, Loya Y Zlotkin E (1995) Delivery of a nematocyst toxin. Nature 375, 456.
36. Kordis D Gubensek F (2000) Adaptive evolution of animal toxin multigene families. Gene 261, 43 52.
37. 2 from snake venom to human secreted forms. J Mol Evol 31, 228 238.
38. Sali A Blundell TL (1993) Comparative protein modelling by satisfaction of spatial restraints. J Mol Biol 234, 779 815.
39. 2, in Escherichia coli. FEBS Lett 334, 55 59.
40. Macek P Lebez D (1981) Kinetics of hemolysis induced by equinatoxin, a cytolytic toxin from the sea anemone Actinia equina. Effect of some ions and pH. Toxicon 19, 233 240.
41. 2 using pyrene-labeled phospholipids in the presence of serum albumin. Anal Biochem 177, 103 109.
42. 2 enzymes. Biochemistry 44, 12535 12545.
43. Gertz EM, Yu YK, Agarwala R, Schaffer AA Altschul SF (2006) Composition-based statistics and translated nucleotide searches: improving the TBLASTN module of BLAST. BMC Biol 4, 41, doi :10.1186/1741-7007-4-41. (Pubitemid 46195777)
44. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23, 2947 2948.
45. Nei M Kumar S (2000) Molecular Evolution and Phylogenetics. Oxford University Press
46. Saitou N Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406 425.
47. Stamatakis A (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics 22, 2688 2690.
48. Van de Peer Y De WR (1997) Construction of evolutionary distance trees with TREECON for Windows: accounting for variation in nucleotide substitution rate among sites. Comput Appl Biosci 13, 227 230.
49. Tamura K, Dudley J, Nei M Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24, 1596 1599.