-
1
-
-
82755166890
-
Inhibition of pyruvate kinase M2 by reactive oxygen species contributes to cellular antioxidant responses
-
Anastasiou, D., Poulogiannis, G., Asara, J.M., Boxer, M.B., Jiang, J., Shen, M., Bellinger, G., Sasaki, A.T., Locasale, J.W., Auld, D.S., et al. Inhibition of pyruvate kinase M2 by reactive oxygen species contributes to cellular antioxidant responses. Science 334 (2011), 1278–1283.
-
(2011)
Science
, vol.334
, pp. 1278-1283
-
-
Anastasiou, D.1
Poulogiannis, G.2
Asara, J.M.3
Boxer, M.B.4
Jiang, J.5
Shen, M.6
Bellinger, G.7
Sasaki, A.T.8
Locasale, J.W.9
Auld, D.S.10
-
2
-
-
37549018895
-
Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2.4.1
-
Arai, H., Roh, J.H., Kaplan, S., Transcriptome dynamics during the transition from anaerobic photosynthesis to aerobic respiration in Rhodobacter sphaeroides 2.4.1. J. Bacteriol. 190 (2008), 286–299.
-
(2008)
J. Bacteriol.
, vol.190
, pp. 286-299
-
-
Arai, H.1
Roh, J.H.2
Kaplan, S.3
-
3
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
2006.0008
-
Baba, T., Ara, T., Hasegawa, M., Takai, Y., Okumura, Y., Baba, M., Datsenko, K.A., Tomita, M., Wanner, B.L., Mori, H., Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol. Syst. Biol., 2, 2006 2006.0008.
-
(2006)
Mol. Syst. Biol.
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
Baba, M.6
Datsenko, K.A.7
Tomita, M.8
Wanner, B.L.9
Mori, H.10
-
4
-
-
84924299916
-
Topological sensitivity analysis for systems biology
-
Babtie, A.C., Kirk, P., Stumpf, M.P.H., Topological sensitivity analysis for systems biology. Proc. Natl. Acad. Sci. USA 111 (2014), 18507–18512.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. 18507-18512
-
-
Babtie, A.C.1
Kirk, P.2
Stumpf, M.P.H.3
-
5
-
-
84874786351
-
Escherichia coli avoids high dissolved oxygen stress by activation of SoxRS and manganese-superoxide dismutase
-
Baez, A., Shiloach, J., Escherichia coli avoids high dissolved oxygen stress by activation of SoxRS and manganese-superoxide dismutase. Microb. Cell Fact., 12, 2013, 23.
-
(2013)
Microb. Cell Fact.
, vol.12
, pp. 23
-
-
Baez, A.1
Shiloach, J.2
-
6
-
-
43149105201
-
Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks
-
Blanchard, J.L., Wholey, W.-Y., Conlon, E.M., Pomposiello, P.J., Rapid changes in gene expression dynamics in response to superoxide reveal SoxRS-dependent and independent transcriptional networks. PLoS One, 2, 2007, e1186.
-
(2007)
PLoS One
, vol.2
, pp. e1186
-
-
Blanchard, J.L.1
Wholey, W.-Y.2
Conlon, E.M.3
Pomposiello, P.J.4
-
7
-
-
0142211218
-
Effects of hydrogen peroxide upon nicotinamide nucleotide metabolism in Escherichia coli: changes in enzyme levels and nicotinamide nucleotide pools and studies of the oxidation of NAD(P)H by Fe(III)
-
Brumaghim, J.L., Li, Y., Henle, E., Linn, S., Effects of hydrogen peroxide upon nicotinamide nucleotide metabolism in Escherichia coli: changes in enzyme levels and nicotinamide nucleotide pools and studies of the oxidation of NAD(P)H by Fe(III). J. Biol. Chem. 278 (2003), 42495–42504.
-
(2003)
J. Biol. Chem.
, vol.278
, pp. 42495-42504
-
-
Brumaghim, J.L.1
Li, Y.2
Henle, E.3
Linn, S.4
-
8
-
-
84907101180
-
Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation
-
Byrne, R.T., Chen, S.H., Wood, E.A., Cabot, E.L., Cox, M.M., Escherichia coli genes and pathways involved in surviving extreme exposure to ionizing radiation. J. Bacteriol. 196 (2014), 3534–3545.
-
(2014)
J. Bacteriol.
, vol.196
, pp. 3534-3545
-
-
Byrne, R.T.1
Chen, S.H.2
Wood, E.A.3
Cabot, E.L.4
Cox, M.M.5
-
9
-
-
0035856579
-
Metabolic flux response to phosphoglucose isomerase knock-out in Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA
-
Canonaco, F., Hess, T.A., Heri, S., Wang, T., Szyperski, T., Sauer, U., Metabolic flux response to phosphoglucose isomerase knock-out in Escherichia coli and impact of overexpression of the soluble transhydrogenase UdhA. FEMS Microbiol. Lett. 204 (2001), 247–252.
-
(2001)
FEMS Microbiol. Lett.
, vol.204
, pp. 247-252
-
-
Canonaco, F.1
Hess, T.A.2
Heri, S.3
Wang, T.4
Szyperski, T.5
Sauer, U.6
-
10
-
-
0037025146
-
Dynamic modeling of the central carbon metabolism of Escherichia coli
-
Chassagnole, C., Noisommit-Rizzi, N., Schmid, J.W., Mauch, K., Reuss, M., Dynamic modeling of the central carbon metabolism of Escherichia coli. Biotechnol. Bioeng. 79 (2002), 53–73.
-
(2002)
Biotechnol. Bioeng.
, vol.79
, pp. 53-73
-
-
Chassagnole, C.1
Noisommit-Rizzi, N.2
Schmid, J.W.3
Mauch, K.4
Reuss, M.5
-
11
-
-
55749116150
-
Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
-
Chechik, G., Oh, E., Rando, O., Weissman, J., Regev, A., Koller, D., Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network. Nat. Biotechnol. 26 (2008), 1251–1259.
-
(2008)
Nat. Biotechnol.
, vol.26
, pp. 1251-1259
-
-
Chechik, G.1
Oh, E.2
Rando, O.3
Weissman, J.4
Regev, A.5
Koller, D.6
-
12
-
-
84908456444
-
Phenotypic variation of Salmonella in host tissues delays eradication by antimicrobial chemotherapy
-
Claudi, B., Spröte, P., Chirkova, A., Personnic, N., Zankl, J., Schürmann, N., Schmidt, A., Bumann, D., Yan, D., Hwa, T., et al. Phenotypic variation of Salmonella in host tissues delays eradication by antimicrobial chemotherapy. Cell 158 (2014), 722–733.
-
(2014)
Cell
, vol.158
, pp. 722-733
-
-
Claudi, B.1
Spröte, P.2
Chirkova, A.3
Personnic, N.4
Zankl, J.5
Schürmann, N.6
Schmidt, A.7
Bumann, D.8
Yan, D.9
Hwa, T.10
-
13
-
-
84978689275
-
The world of protein acetylation
-
Drazic, A., Myklebust, L.M., Ree, R., Arnesen, T., The world of protein acetylation. Biochim. Biophys. Acta 1864 (2016), 1372–1401.
-
(2016)
Biochim. Biophys. Acta
, vol.1864
, pp. 1372-1401
-
-
Drazic, A.1
Myklebust, L.M.2
Ree, R.3
Arnesen, T.4
-
14
-
-
0036804710
-
Free radicals, antioxidants, and nutrition
-
Fang, Y.-Z., Yang, S., Wu, G., Free radicals, antioxidants, and nutrition. Nutrition 18 (2002), 872–879.
-
(2002)
Nutrition
, vol.18
, pp. 872-879
-
-
Fang, Y.-Z.1
Yang, S.2
Wu, G.3
-
15
-
-
0037376674
-
Oxidant signals and oxidative stress
-
Finkel, T., Oxidant signals and oxidative stress. Curr. Opin. Cell Biol. 15 (2003), 247–254.
-
(2003)
Curr. Opin. Cell Biol.
, vol.15
, pp. 247-254
-
-
Finkel, T.1
-
16
-
-
0142152457
-
Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model
-
Fong, S.S., Marciniak, J.Y., Palsson, B.Ø., Description and interpretation of adaptive evolution of Escherichia coli K-12 MG1655 by using a genome-scale in silico metabolic model. J. Bacteriol. 185 (2003), 6400–6408.
-
(2003)
J. Bacteriol.
, vol.185
, pp. 6400-6408
-
-
Fong, S.S.1
Marciniak, J.Y.2
Palsson, B.Ø.3
-
17
-
-
14244256095
-
Experimental identification and quantification of glucose metabolism in seven bacterial species
-
Fuhrer, T., Fischer, E., Sauer, U., Experimental identification and quantification of glucose metabolism in seven bacterial species. J. Bacteriol. 187 (2005), 1581–1590.
-
(2005)
J. Bacteriol.
, vol.187
, pp. 1581-1590
-
-
Fuhrer, T.1
Fischer, E.2
Sauer, U.3
-
18
-
-
64049099490
-
Different biochemical mechanisms ensure network-wide balancing of reducing equivalents in microbial metabolism
-
Fuhrer, T., Sauer, U., Different biochemical mechanisms ensure network-wide balancing of reducing equivalents in microbial metabolism. J. Bacteriol. 191 (2009), 2112–2121.
-
(2009)
J. Bacteriol.
, vol.191
, pp. 2112-2121
-
-
Fuhrer, T.1
Sauer, U.2
-
19
-
-
84951061481
-
Pseudo-transition analysis identifies the key regulators of dynamic metabolic adaptations from steady-state data
-
Gerosa, L., Haverkorn van Rijsewijk, B.R.B., Christodoulou, D., Kochanowski, K., Schmidt, T.S.B., Noor, E., Sauer, U., Pseudo-transition analysis identifies the key regulators of dynamic metabolic adaptations from steady-state data. Cell Syst. 1 (2015), 270–282.
-
(2015)
Cell Syst.
, vol.1
, pp. 270-282
-
-
Gerosa, L.1
Haverkorn van Rijsewijk, B.R.B.2
Christodoulou, D.3
Kochanowski, K.4
Schmidt, T.S.B.5
Noor, E.6
Sauer, U.7
-
20
-
-
0024991947
-
Influence of growth rate on susceptibility to antimicrobial agents: biofilms, cell cycle, dormancy, and stringent response
-
Gilbert, P., Collier, P.J., Brown, M.R., Influence of growth rate on susceptibility to antimicrobial agents: biofilms, cell cycle, dormancy, and stringent response. Antimicrob. Agents Chemother. 34 (1990), 1865–1868.
-
(1990)
Antimicrob. Agents Chemother.
, vol.34
, pp. 1865-1868
-
-
Gilbert, P.1
Collier, P.J.2
Brown, M.R.3
-
21
-
-
41149146615
-
Metabolic reconfiguration is a regulated response to oxidative stress
-
Grant, C.M., Metabolic reconfiguration is a regulated response to oxidative stress. J. Biol., 7, 2008, 1.
-
(2008)
J. Biol.
, vol.7
, pp. 1
-
-
Grant, C.M.1
-
22
-
-
0024343602
-
A global response induced in Escherichia coli by redox-cycling agents overlaps with that induced by peroxide stress
-
Greenberg, J.T., Demple, B., A global response induced in Escherichia coli by redox-cycling agents overlaps with that induced by peroxide stress. J. Bacteriol. 171 (1989), 3933–3939.
-
(1989)
J. Bacteriol.
, vol.171
, pp. 3933-3939
-
-
Greenberg, J.T.1
Demple, B.2
-
23
-
-
84879422944
-
The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium
-
Imlay, J.A., The molecular mechanisms and physiological consequences of oxidative stress: lessons from a model bacterium. Nat. Rev. Microbiol. 11 (2013), 443–454.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 443-454
-
-
Imlay, J.A.1
-
24
-
-
84875090763
-
Ensemble kinetic modeling of metabolic networks from dynamic metabolic profiles
-
Jia, G., Stephanopoulos, G., Gunawan, R., Ensemble kinetic modeling of metabolic networks from dynamic metabolic profiles. Metabolites 2 (2012), 891–912.
-
(2012)
Metabolites
, vol.2
, pp. 891-912
-
-
Jia, G.1
Stephanopoulos, G.2
Gunawan, R.3
-
25
-
-
33646568438
-
Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research
-
Kitagawa, M., Ara, T., Arifuzzaman, M., Ioka-Nakamichi, T., Inamoto, E., Toyonaga, H., Mori, H., Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 12 (2006), 291–299.
-
(2006)
DNA Res.
, vol.12
, pp. 291-299
-
-
Kitagawa, M.1
Ara, T.2
Arifuzzaman, M.3
Ioka-Nakamichi, T.4
Inamoto, E.5
Toyonaga, H.6
Mori, H.7
-
26
-
-
85010886942
-
Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli
-
Kochanowski, K., Gerosa, L., Brunner, S.F., Christodoulou, D., Nikolaev, Y.V., Sauer, U., Few regulatory metabolites coordinate expression of central metabolic genes in Escherichia coli. Mol. Syst. Biol., 13, 2017, 903.
-
(2017)
Mol. Syst. Biol.
, vol.13
, pp. 903
-
-
Kochanowski, K.1
Gerosa, L.2
Brunner, S.F.3
Christodoulou, D.4
Nikolaev, Y.V.5
Sauer, U.6
-
27
-
-
0036867895
-
Oxidation of biological systems: oxidative stress phenomena, antioxidants, redox reactions, and methods for their quantification
-
Kohen, R., Nyska, A., Oxidation of biological systems: oxidative stress phenomena, antioxidants, redox reactions, and methods for their quantification. Toxicol. Pathol. 30 (2002), 620–650.
-
(2002)
Toxicol. Pathol.
, vol.30
, pp. 620-650
-
-
Kohen, R.1
Nyska, A.2
-
28
-
-
79953906141
-
The pentose phosphate pathway is a metabolic redox sensor and regulates transcription during the antioxidant response
-
Krüger, A., Grüning, N.-M., Wamelink, M.M.C., Kerick, M., Kirpy, A., Parkhomchuk, D., Bluemlein, K., Schweiger, M.-R., Soldatov, A., Lehrach, H., et al. The pentose phosphate pathway is a metabolic redox sensor and regulates transcription during the antioxidant response. Antioxid. Redox Signal. 15 (2011), 311–324.
-
(2011)
Antioxid. Redox Signal.
, vol.15
, pp. 311-324
-
-
Krüger, A.1
Grüning, N.-M.2
Wamelink, M.M.C.3
Kerick, M.4
Kirpy, A.5
Parkhomchuk, D.6
Bluemlein, K.7
Schweiger, M.-R.8
Soldatov, A.9
Lehrach, H.10
-
29
-
-
84938740158
-
Acute activation of oxidative pentose phosphate pathway as first-line response to oxidative stress in human skin cells
-
Kuehne, A., Emmert, H., Soehle, J., Winnefeld, M., Fischer, F., Wenck, H., Gallinat, S., Terstegen, L., Lucius, R., Hildebrand, J., et al. Acute activation of oxidative pentose phosphate pathway as first-line response to oxidative stress in human skin cells. Mol. Cell 59 (2015), 359–371.
-
(2015)
Mol. Cell
, vol.59
, pp. 359-371
-
-
Kuehne, A.1
Emmert, H.2
Soehle, J.3
Winnefeld, M.4
Fischer, F.5
Wenck, H.6
Gallinat, S.7
Terstegen, L.8
Lucius, R.9
Hildebrand, J.10
-
30
-
-
84869442072
-
Targeted and quantitative metabolomics in bacteria
-
Link, H., Buescher, J.M., Sauer, U., Targeted and quantitative metabolomics in bacteria. Methods Microbiol. 39 (2012), 127–150.
-
(2012)
Methods Microbiol.
, vol.39
, pp. 127-150
-
-
Link, H.1
Buescher, J.M.2
Sauer, U.3
-
31
-
-
84894054579
-
Advancing metabolic models with kinetic information
-
Link, H., Christodoulou, D., Sauer, U., Advancing metabolic models with kinetic information. Curr. Opin. Biotechnol. 29 (2014), 8–14.
-
(2014)
Curr. Opin. Biotechnol.
, vol.29
, pp. 8-14
-
-
Link, H.1
Christodoulou, D.2
Sauer, U.3
-
32
-
-
84877296949
-
Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo
-
Link, H., Kochanowski, K., Sauer, U., Systematic identification of allosteric protein-metabolite interactions that control enzyme activity in vivo. Nat. Biotechnol. 31 (2013), 357–361.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 357-361
-
-
Link, H.1
Kochanowski, K.2
Sauer, U.3
-
33
-
-
84864574150
-
Why do bacteria use so many enzymes to scavenge hydrogen peroxide?
-
Mishra, S., Imlay, J., Why do bacteria use so many enzymes to scavenge hydrogen peroxide?. Arch. Biochem. Biophys. 525 (2012), 145–160.
-
(2012)
Arch. Biochem. Biophys.
, vol.525
, pp. 145-160
-
-
Mishra, S.1
Imlay, J.2
-
34
-
-
33750740392
-
Oxidative inactivation of reduced NADP-generating enzymes in E. coli: iron-dependent inactivation with affinity cleavage of NADP-isocitrate dehydrogenase
-
Murakami, K., Tsubouchi, R., Fukayama, M., Ogawa, T., Yoshino, M., Oxidative inactivation of reduced NADP-generating enzymes in E. coli: iron-dependent inactivation with affinity cleavage of NADP-isocitrate dehydrogenase. Arch. Microbiol. 186 (2006), 385–392.
-
(2006)
Arch. Microbiol.
, vol.186
, pp. 385-392
-
-
Murakami, K.1
Tsubouchi, R.2
Fukayama, M.3
Ogawa, T.4
Yoshino, M.5
-
35
-
-
84969625515
-
Systematic identification of protein–metabolite interactions in complex metabolite mixtures by ligand-detected nuclear magnetic resonance spectroscopy
-
Nikolaev, Y.V., Kochanowski, K., Link, H., Sauer, U., Allain, F.H.-T., Systematic identification of protein–metabolite interactions in complex metabolite mixtures by ligand-detected nuclear magnetic resonance spectroscopy. Biochemistry 55 (2016), 2590–2600.
-
(2016)
Biochemistry
, vol.55
, pp. 2590-2600
-
-
Nikolaev, Y.V.1
Kochanowski, K.2
Link, H.3
Sauer, U.4
Allain, F.H.-T.5
-
36
-
-
0026784249
-
Two-stage control of an oxidative stress regulon: the Escherichia coli SoxR protein triggers redox-inducible expression of the soxS regulatory gene
-
Nunoshiba, T., Hidalgo, E., Amábile Cuevas, C.F., Demple, B., Two-stage control of an oxidative stress regulon: the Escherichia coli SoxR protein triggers redox-inducible expression of the soxS regulatory gene. J. Bacteriol. 174 (1992), 6054–6060.
-
(1992)
J. Bacteriol.
, vol.174
, pp. 6054-6060
-
-
Nunoshiba, T.1
Hidalgo, E.2
Amábile Cuevas, C.F.3
Demple, B.4
-
37
-
-
84862528617
-
The cofactor preference of glucose-6-phosphate dehydrogenase from Escherichia coli—modeling the physiological production of reduced cofactors
-
Olavarría, K., Valdés, D., Cabrera, R., The cofactor preference of glucose-6-phosphate dehydrogenase from Escherichia coli—modeling the physiological production of reduced cofactors. FEBS J. 279 (2012), 2296–2309.
-
(2012)
FEBS J.
, vol.279
, pp. 2296-2309
-
-
Olavarría, K.1
Valdés, D.2
Cabrera, R.3
-
38
-
-
84966671557
-
Metabolite concentrations, fluxes and free energies imply efficient enzyme usage
-
Park, J.O., Rubin, S.A., Xu, Y.-F., Amador-Noguez, D., Fan, J., Shlomi, T., Rabinowitz, J.D., Metabolite concentrations, fluxes and free energies imply efficient enzyme usage. Nat. Chem. Biol. 12 (2016), 482–489.
-
(2016)
Nat. Chem. Biol.
, vol.12
, pp. 482-489
-
-
Park, J.O.1
Rubin, S.A.2
Xu, Y.-F.3
Amador-Noguez, D.4
Fan, J.5
Shlomi, T.6
Rabinowitz, J.D.7
-
39
-
-
37549072681
-
Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress
-
Ralser, M., Wamelink, M.M., Kowald, A., Gerisch, B., Heeren, G., Struys, E.A., Klipp, E., Jakobs, C., Breitenbach, M., Lehrach, H., et al. Dynamic rerouting of the carbohydrate flux is key to counteracting oxidative stress. J. Biol., 6, 2007, 10.
-
(2007)
J. Biol.
, vol.6
, pp. 10
-
-
Ralser, M.1
Wamelink, M.M.2
Kowald, A.3
Gerisch, B.4
Heeren, G.5
Struys, E.A.6
Klipp, E.7
Jakobs, C.8
Breitenbach, M.9
Lehrach, H.10
-
40
-
-
67650473274
-
Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response
-
Ralser, M., Wamelink, M.M.C., Latkolik, S., Jansen, E.E.W., Lehrach, H., Jakobs, C., Metabolic reconfiguration precedes transcriptional regulation in the antioxidant response. Nat. Biotechnol. 27 (2009), 604–605.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 604-605
-
-
Ralser, M.1
Wamelink, M.M.C.2
Latkolik, S.3
Jansen, E.E.W.4
Lehrach, H.5
Jakobs, C.6
-
41
-
-
85029349659
-
Genome-scale architecture of small molecule regulatory networks and the fundamental trade-off between regulation and enzymatic activity
-
Reznik, E., Christodoulou, D., Goldford, J.E., Briars, E., Sauer, U., Segrè, D., Noor, E., Genome-scale architecture of small molecule regulatory networks and the fundamental trade-off between regulation and enzymatic activity. Cell Rep. 20 (2017), 2666–2677.
-
(2017)
Cell Rep.
, vol.20
, pp. 2666-2677
-
-
Reznik, E.1
Christodoulou, D.2
Goldford, J.E.3
Briars, E.4
Sauer, U.5
Segrè, D.6
Noor, E.7
-
42
-
-
77956467426
-
A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress
-
Rui, B., Shen, T., Zhou, H., Liu, J., Chen, J., Pan, X., Liu, H., Wu, J., Zheng, H., Shi, Y., A systematic investigation of Escherichia coli central carbon metabolism in response to superoxide stress. BMC Syst. Biol., 4, 2010, 122.
-
(2010)
BMC Syst. Biol.
, vol.4
, pp. 122
-
-
Rui, B.1
Shen, T.2
Zhou, H.3
Liu, J.4
Chen, J.5
Pan, X.6
Liu, H.7
Wu, J.8
Zheng, H.9
Shi, Y.10
-
43
-
-
80053588915
-
Glucose-6-phosphate dehydrogenase protects Escherichia coli from tellurite-mediated oxidative stress
-
Sandoval, J.M., Arenas, F.A., Vásquez, C.C., Purwantini, E., Daniels, L., Glucose-6-phosphate dehydrogenase protects Escherichia coli from tellurite-mediated oxidative stress. PLoS One, 6, 2011, e25573.
-
(2011)
PLoS One
, vol.6
, pp. e25573
-
-
Sandoval, J.M.1
Arenas, F.A.2
Vásquez, C.C.3
Purwantini, E.4
Daniels, L.5
-
44
-
-
0014939397
-
Regulatory mechanisms involving nicotinamide adenine nucleotides as allosteric effectors. 3. Control of glucose 6-phosphate dehydrogenase
-
Sanwal, B.D., Regulatory mechanisms involving nicotinamide adenine nucleotides as allosteric effectors. 3. Control of glucose 6-phosphate dehydrogenase. J. Biol. Chem. 245 (1970), 1626–1631.
-
(1970)
J. Biol. Chem.
, vol.245
, pp. 1626-1631
-
-
Sanwal, B.D.1
-
45
-
-
1342325419
-
The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli
-
Sauer, U., Canonaco, F., Heri, S., Perrenoud, A., Fischer, E., The soluble and membrane-bound transhydrogenases UdhA and PntAB have divergent functions in NADPH metabolism of Escherichia coli. J. Biol. Chem. 279 (2004), 6613–6619.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 6613-6619
-
-
Sauer, U.1
Canonaco, F.2
Heri, S.3
Perrenoud, A.4
Fischer, E.5
-
46
-
-
84953737483
-
The quantitative and condition-dependent Escherichia coli proteome
-
Schmidt, A., Kochanowski, K., Vedelaar, S., Ahrné, E., Volkmer, B., Callipo, L., Knoops, K., Bauer, M., Aebersold, R., Heinemann, M., The quantitative and condition-dependent Escherichia coli proteome. Nat. Biotechnol. 34 (2015), 104–110.
-
(2015)
Nat. Biotechnol.
, vol.34
, pp. 104-110
-
-
Schmidt, A.1
Kochanowski, K.2
Vedelaar, S.3
Ahrné, E.4
Volkmer, B.5
Callipo, L.6
Knoops, K.7
Bauer, M.8
Aebersold, R.9
Heinemann, M.10
-
47
-
-
0001131495
-
Enzyme kinetics: behavior and analysis of steady-state and rapid equilibrium enzyme systems
-
Available at: (Accessed: 13 July 2017)
-
Segal, I., Enzyme kinetics: behavior and analysis of steady-state and rapid equilibrium enzyme systems. Available at: https://scholar.google.com/scholar?q=Segal+enzyme+kinetics+behavior+and+analysis&btnG=&hl=en&as_sdt=0%2C5, 1975 (Accessed: 13 July 2017).
-
(1975)
-
-
Segal, I.1
-
48
-
-
84939798405
-
Genome-wide reconstruction of OxyR and SoxRS transcriptional regulatory networks under oxidative stress in Escherichia coli K-12 MG1655
-
Seo, S.W., Kim, D., Szubin, R., Palsson, B.O., Genome-wide reconstruction of OxyR and SoxRS transcriptional regulatory networks under oxidative stress in Escherichia coli K-12 MG1655. Cell Rep. 12 (2015), 1289–1299.
-
(2015)
Cell Rep.
, vol.12
, pp. 1289-1299
-
-
Seo, S.W.1
Kim, D.2
Szubin, R.3
Palsson, B.O.4
-
49
-
-
84904720029
-
Regulation systems of bacteria such as Escherichia coli in response to nutrient limitation and environmental stresses
-
Shimizu, K., Regulation systems of bacteria such as Escherichia coli in response to nutrient limitation and environmental stresses. Metabolites 4 (2013), 1–35.
-
(2013)
Metabolites
, vol.4
, pp. 1-35
-
-
Shimizu, K.1
-
50
-
-
84879401680
-
Global dynamics of the Escherichia coli proteome and phosphoproteome during growth in minimal medium
-
Soares, N.C., Spät, P., Krug, K., Macek, B., Global dynamics of the Escherichia coli proteome and phosphoproteome during growth in minimal medium. J. Proteome Res. 12 (2013), 2611–2621.
-
(2013)
J. Proteome Res.
, vol.12
, pp. 2611-2621
-
-
Soares, N.C.1
Spät, P.2
Krug, K.3
Macek, B.4
-
51
-
-
84859787172
-
Glucose-6-phosphate dehydrogenase, NADPH, and cell survival
-
Stanton, R.C., Glucose-6-phosphate dehydrogenase, NADPH, and cell survival. IUBMB Life 64 (2012), 362–369.
-
(2012)
IUBMB Life
, vol.64
, pp. 362-369
-
-
Stanton, R.C.1
-
52
-
-
84878742739
-
Automatic generation of predictive dynamic models reveals nuclear phosphorylation as the key Msn2 control mechanism
-
Sunnaker, M., Zamora-Sillero, E., Dechant, R., Ludwig, C., Busetto, A.G., Wagner, A., Stelling, J., Automatic generation of predictive dynamic models reveals nuclear phosphorylation as the key Msn2 control mechanism. Sci. Signal., 6, 2013, ra41.
-
(2013)
Sci. Signal.
, vol.6
, pp. ra41
-
-
Sunnaker, M.1
Zamora-Sillero, E.2
Dechant, R.3
Ludwig, C.4
Busetto, A.G.5
Wagner, A.6
Stelling, J.7
-
53
-
-
84892773110
-
Topological augmentation to infer hidden processes in biological systems
-
Sunnaker, M., Zamora-Sillero, E., Lopez Garcia de Lomana, A., Rudroff, F., Sauer, U., Stelling, J., Wagner, A., Topological augmentation to infer hidden processes in biological systems. Bioinformatics 30 (2014), 221–227.
-
(2014)
Bioinformatics
, vol.30
, pp. 221-227
-
-
Sunnaker, M.1
Zamora-Sillero, E.2
Lopez Garcia de Lomana, A.3
Rudroff, F.4
Sauer, U.5
Stelling, J.6
Wagner, A.7
-
54
-
-
0037383650
-
On the undecidability among kinetic models: from model selection to model averaging
-
Turkheimer, F.E., Hinz, R., Cunningham, V.J., On the undecidability among kinetic models: from model selection to model averaging. J. Cereb. Blood Flow Metab. 23 (2003), 490–498.
-
(2003)
J. Cereb. Blood Flow Metab.
, vol.23
, pp. 490-498
-
-
Turkheimer, F.E.1
Hinz, R.2
Cunningham, V.J.3
-
55
-
-
84862497417
-
Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using 13 C metabolic flux analysis
-
Usui, Y., Hirasawa, T., Furusawa, C., Shirai, T., Yamamoto, N., Mori, H., Shimizu, H., Investigating the effects of perturbations to pgi and eno gene expression on central carbon metabolism in Escherichia coli using 13 C metabolic flux analysis. Microb. Cell Fact., 11, 2012, 87.
-
(2012)
Microb. Cell Fact.
, vol.11
, pp. 87
-
-
Usui, Y.1
Hirasawa, T.2
Furusawa, C.3
Shirai, T.4
Yamamoto, N.5
Mori, H.6
Shimizu, H.7
-
56
-
-
84861223378
-
Effect of tellurite-mediated oxidative stress on the Escherichia coli glycolytic pathway
-
Valdivia-González, M., Pérez-Donoso, J.M., Vásquez, C.C., Effect of tellurite-mediated oxidative stress on the Escherichia coli glycolytic pathway. Biometals 25 (2012), 451–458.
-
(2012)
Biometals
, vol.25
, pp. 451-458
-
-
Valdivia-González, M.1
Pérez-Donoso, J.M.2
Vásquez, C.C.3
-
57
-
-
50349092706
-
Kinetic flux profiling for quantitation of cellular metabolic fluxes
-
Yuan, J., Bennett, B.D., Rabinowitz, J.D., Kinetic flux profiling for quantitation of cellular metabolic fluxes. Nat. Protoc. 3 (2008), 1328–1340.
-
(2008)
Nat. Protoc.
, vol.3
, pp. 1328-1340
-
-
Yuan, J.1
Bennett, B.D.2
Rabinowitz, J.D.3
-
58
-
-
0033991496
-
Redox sensing by prokaryotic transcription factors
-
Zheng, M., Storz, G., Redox sensing by prokaryotic transcription factors. Biochem. Pharmacol. 59 (2000), 1–6.
-
(2000)
Biochem. Pharmacol.
, vol.59
, pp. 1-6
-
-
Zheng, M.1
Storz, G.2
|