메뉴 건너뛰기




Volumn 30, Issue 2, 2014, Pages 221-227

Topological augmentation to infer hidden processes in biological systems

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID TRANSPORTER; DRUG; GLUTAMINE; GLUTAMINE PERMEASE;

EID: 84892773110     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btt638     Document Type: Article
Times cited : (11)

References (25)
  • 1
    • 0000501656 scopus 로고
    • Information theory and an extension of the maximum likelihood principle
    • Akaike, H. (1973) Information theory and an extension of the maximum likelihood principle. In: 2nd International Symposium on Information Theory. pp. 267-281.
    • (1973) 2nd International Symposium on Information Theory. , pp. 267-281
    • Akaike, H.1
  • 2
    • 13844253637 scopus 로고    scopus 로고
    • A Bayesian approach to reconstructing genetic regulatory networks with hidden factors
    • Beal, M. et al. (2005) A Bayesian approach to reconstructing genetic regulatory networks with hidden factors. Bioinformatics, 21, 349-356.
    • (2005) Bioinformatics , vol.21 , pp. 349-356
    • Beal, M.1
  • 3
    • 67649922821 scopus 로고    scopus 로고
    • ModelMage: A tool for automatic model generation, selection and management
    • Floettmann, J. et al. (2008) ModelMage: a tool for automatic model generation, selection and management. Genome Inform., 20, 52-63.
    • (2008) Genome Inform. , vol.20 , pp. 52-63
    • Floettmann, J.1
  • 4
    • 0028975232 scopus 로고
    • The standard error of a weighted mean concentration-I. Bootstrapping vs other methods
    • Gatz, D. and Smith, L. (1995) The standard error of a weighted mean concentration-I. bootstrapping vs other methods. Atmos. Environ., 29, 1185-1193.
    • (1995) Atmos. Environ. , vol.29 , pp. 1185-1193
    • Gatz, D.1    Smith, L.2
  • 5
    • 62549113091 scopus 로고    scopus 로고
    • Nitrogen catabolite repression-sensitive transcription as a readout of Tor pathway regulation: The genetic background, reporter gene and GATA factor assayed determine the outcomes
    • Georis, A. et al. (2009) Nitrogen catabolite repression-sensitive transcription as a readout of Tor pathway regulation: the genetic background, reporter gene and GATA factor assayed determine the outcomes. Genetics, 181, 861-874.
    • (2009) Genetics , vol.181 , pp. 861-874
    • Georis, A.1
  • 6
    • 0032750741 scopus 로고    scopus 로고
    • Nitrogen catabolite repression in Saccharomyces cerevisiae
    • Hofman-Bang, J. (1999) Nitrogen catabolite repression in Saccharomyces cerevisiae. Mol. Biotechnol., 12, 35-73.
    • (1999) Mol. Biotechnol. , vol.12 , pp. 35-73
    • Hofman-Bang, J.1
  • 8
    • 27744515739 scopus 로고    scopus 로고
    • Using stochastic differential equations for PK/PD model development
    • Kristensen, N.R. et al. (2005) Using stochastic differential equations for PK/PD model development., J. Pharmacokinet. Pharmacodyn., 32, 109-141.
    • (2005) J. Pharmacokinet. Pharmacodyn. , vol.32 , pp. 109-141
    • Kristensen, N.R.1
  • 9
    • 34948840834 scopus 로고    scopus 로고
    • Ensemble modeling for analysis of cell signaling dynamics
    • Kuepfer, L. et al. (2007) Ensemble modeling for analysis of cell signaling dynamics. Nat. Biotechnol., 25, 1001-1006.
    • (2007) Nat. Biotechnol. , vol.25 , pp. 1001-1006
    • Kuepfer, L.1
  • 10
    • 66149122278 scopus 로고    scopus 로고
    • Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p
    • Moxley, J.F. et al. (2009) Linking high-resolution metabolic flux phenotypes and transcriptional regulation in yeast modulated by the global regulator Gcn4p. Proc. Natl Acad. Sci. USA, 106, 6477-6482.
    • (2009) Proc. Natl Acad. Sci. USA , vol.106 , pp. 6477-6482
    • Moxley, J.F.1
  • 11
    • 14844307159 scopus 로고    scopus 로고
    • Inferring quantitative models of regulatory networks from expression data
    • Nachman, I. et al. (2004) Inferring quantitative models of regulatory networks from expression data. Bioinformatics, 20 (Suppl. 1), i248-i256.
    • (2004) Bioinformatics , vol.20 , Issue.SUPPL. 1
    • Nachman, I.1
  • 13
    • 23844551829 scopus 로고    scopus 로고
    • Non-linear mixed-effects models with stochastic differential equations: Implementation of an estimation algorithm
    • Overgaard, R.V. et al. (2005) Non-linear mixed-effects models with stochastic differential equations: implementation of an estimation algorithm. J. Pharmacokinet. Pharmacodyn., 32, 85-107.
    • (2005) J. Pharmacokinet. Pharmacodyn. , vol.32 , pp. 85-107
    • Overgaard, R.V.1
  • 14
    • 4143058645 scopus 로고    scopus 로고
    • Gene networks inference using dynamic Bayesian networks
    • Perrin, B-E. et al. (2003) Gene networks inference using dynamic Bayesian networks. Bioinformatics, 19 (Suppl. 2), ii138-ii148.
    • (2003) Bioinformatics , vol.19 , Issue.SUPPL. 2
    • Perrin, B.-E.1
  • 15
    • 0031971444 scopus 로고    scopus 로고
    • Dip5p mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate in Saccharomyces cerevisiae
    • Regenberg, B. et al. (1998) Dip5p mediates high-affinity and high-capacity transport of L-glutamate and L-aspartate in Saccharomyces cerevisiae. Curr. Genet., 33, 171-177.
    • (1998) Curr. Genet. , vol.33 , pp. 171-177
    • Regenberg, B.1
  • 16
    • 33749467954 scopus 로고    scopus 로고
    • Activity-dependent reversible inactivation of the general amino acid permease
    • Risinger, A.L. et al. (2006) Activity-dependent reversible inactivation of the general amino acid permease. Mol. Biol. Cell, 17, 4411-4419.
    • (2006) Mol. Biol. Cell , vol.17 , pp. 4411-4419
    • Risinger, A.L.1
  • 17
    • 80052672907 scopus 로고    scopus 로고
    • Automated refinement and inference of analytical models for metabolic networks
    • Schmidt, M.D. et al. (2011) Automated refinement and inference of analytical models for metabolic networks. Phys. Biol., 8, 055011.
    • (2011) Phys. Biol. , vol.8 , pp. 055011
    • Schmidt, M.D.1
  • 18
    • 0031968610 scopus 로고    scopus 로고
    • The Saccharomyces cerevisiae YCC5 (YCL025c) gene encodes an amino acid permease, Agp1, which transports asparagine and glutamine
    • Schreve, J.L. et al. (1998) The Saccharomyces cerevisiae YCC5 (YCL025c) gene encodes an amino acid permease, Agp1, which transports asparagine and glutamine. J. Bacteriol., 180, 2556-2559.
    • (1998) J. Bacteriol. , vol.180 , pp. 2556-2559
    • Schreve, J.L.1
  • 19
    • 84873503481 scopus 로고    scopus 로고
    • Approximate bayesian computation
    • Sunnaker, M. et al. (2013a) Approximate bayesian computation. PLoS Comput. Biol., 9, e1002803.
    • (2013) PLoS Comput. Biol. , vol.9
    • Sunnaker, M.1
  • 20
    • 84878742739 scopus 로고    scopus 로고
    • Automatic generation of predictive dynamic models reveals nuclear phosphorylation as the key Msn2 control mechanism
    • Sunnaker, M. et al. (2013b) Automatic generation of predictive dynamic models reveals nuclear phosphorylation as the key Msn2 control mechanism. Sci. Signal., 6, ra41.
    • (2013) Sci. Signal. , vol.6
    • Sunnaker, M.1
  • 21
    • 75249088572 scopus 로고    scopus 로고
    • Simulation-based model selection for dynamical systems in systems and population biology
    • Toni, T. and Stumpf, M.P. (2010) Simulation-based model selection for dynamical systems in systems and population biology. Bioinformatics, 26, 104-110.
    • (2010) Bioinformatics , vol.26 , pp. 104-110
    • Toni, T.1    Stumpf, M.P.2
  • 22
    • 2442691914 scopus 로고    scopus 로고
    • Modeling gene expression from microarray expression data with state-space equations
    • Wu, I. et al. (2004) Modeling gene expression from microarray expression data with state-space equations. Pac. Symp. Biocomput., 9, 581-592.
    • (2004) Pac. Symp. Biocomput. , vol.9 , pp. 581-592
    • Wu, I.1
  • 23
    • 77956634296 scopus 로고    scopus 로고
    • Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species
    • Xu, T-R. et al. (2010) Inferring signaling pathway topologies from multiple perturbation measurements of specific biochemical species. Sci. Signal., 3, ra20.
    • (2010) Sci. Signal. , vol.3
    • Xu, T.-R.1
  • 24
    • 80052867973 scopus 로고    scopus 로고
    • Efficient characterization of high-dimensional parameter spaces for systems biology
    • Zamora-Sillero, E. et al. (2011) Efficient characterization of high-dimensional parameter spaces for systems biology. BMC Syst. Biol., 5, 142.
    • (2011) BMC Syst. Biol. , vol.5 , pp. 142
    • Zamora-Sillero, E.1
  • 25
    • 0029785647 scopus 로고    scopus 로고
    • GNP1, the high-affinity glutamine permease of S. Cerevisiae
    • Zhu, X. et al. (1996) GNP1, the high-affinity glutamine permease of S. cerevisiae. Curr. Genet., 30, 107-114.
    • (1996) Curr. Genet. , vol.30 , pp. 107-114
    • Zhu, X.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.