메뉴 건너뛰기




Volumn 9, Issue 1, 2018, Pages

The essential genome of Escherichia coli K-12

Author keywords

Escherichia coli; Genomics; Tn seq; TraDIS

Indexed keywords

BETA GALACTOSIDASE; CHLORAMPHENICOL;

EID: 85043514344     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.02096-17     Document Type: Article
Times cited : (212)

References (75)
  • 2
    • 40549106730 scopus 로고    scopus 로고
    • Profiling of Escherichia coli Chromosome database
    • Yamazaki Y, Niki H, Kato J. 2008. Profiling of Escherichia coli Chromosome database. Methods Mol Biol 416:385–389. https://doi.org/10.1007/978-1 -59745-321-9_26.
    • (2008) Methods Mol Biol , vol.416 , pp. 385-389
    • Yamazaki, Y.1    Niki, H.2    Kato, J.3
  • 3
    • 84856372043 scopus 로고    scopus 로고
    • Virulence determinants in the obligate intracellular pathogen Chlamydia trachomatis revealed by forward genetic approaches
    • Nguyen BD, Valdivia RH. 2012. Virulence determinants in the obligate intracellular pathogen Chlamydia trachomatis revealed by forward genetic approaches. Proc Natl Acad Sci U S A 109:1263–1268. https://doi.org/10.1073/pnas.1117884109.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 1263-1268
    • Nguyen, B.D.1    Valdivia, R.H.2
  • 5
    • 70349611730 scopus 로고    scopus 로고
    • Tn-seq: High-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms
    • van Opijnen T, Bodi KL, Camilli A. 2009. Tn-seq: high-throughput parallel sequencing for fitness and genetic interaction studies in microorganisms. Nat Methods 6:767–772. https://doi.org/10.1038/nmeth.1377.
    • (2009) Nat Methods , vol.6 , pp. 767-772
    • van Opijnen, T.1    Bodi, K.L.2    Camilli, A.3
  • 6
    • 70349510646 scopus 로고    scopus 로고
    • Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung
    • Gawronski JD, Wong SMS, Giannoukos G, Ward DV, Akerley BJ. 2009. Tracking insertion mutants within libraries by deep sequencing and a genome-wide screen for Haemophilus genes required in the lung. Proc Natl Acad Sci U S A 106:16422–16427. https://doi.org/10.1073/pnas.0906627106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 16422-16427
    • Gawronski, J.D.1    Wong, S.M.S.2    Giannoukos, G.3    Ward, D.V.4    Akerley, B.J.5
  • 11
    • 85043521336 scopus 로고    scopus 로고
    • Physical enrichment of transposon mutants from saturation mutant libraries using the TraDISort approach
    • Paulsen IT, Cain AK, Hassan KA. 2017. Physical enrichment of transposon mutants from saturation mutant libraries using the TraDISort approach. Mob Genet Elements 7:1–7. https://doi.org/10.1080/2159256X.2017.1313805.
    • (2017) Mob Genet Elements , vol.7 , pp. 1-7
    • Paulsen, I.T.1    Cain, A.K.2    Hassan, K.A.3
  • 14
    • 84985993195 scopus 로고    scopus 로고
    • Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi
    • Troy EB, Lin T, Gao L, Lazinski DW, Lundt M, Camilli A, Norris SJ, Hu LT. 2016. Global Tn-seq analysis of carbohydrate utilization and vertebrate infectivity of Borrelia burgdorferi. Mol Microbiol 101:1003–1023. https://doi.org/10.1111/mmi.13437.
    • (2016) Mol Microbiol , vol.101 , pp. 1003-1023
    • Troy, E.B.1    Lin, T.2    Gao, L.3    Lazinski, D.W.4    Lundt, M.5    Camilli, A.6    Norris, S.J.7    Hu, L.T.8
  • 16
    • 40549105704 scopus 로고    scopus 로고
    • Modeling competitive outgrowth of mutant populations: Why do essentiality screens yield divergent results?
    • Grenov AI, Gerdes SY. 2008. Modeling competitive outgrowth of mutant populations: why do essentiality screens yield divergent results? Methods Mol Biol 416:361–367. https://doi.org/10.1007/978-1 -59745-321-9_24.
    • (2008) Methods Mol Biol , vol.416 , pp. 361-367
    • Grenov, A.I.1    Gerdes, S.Y.2
  • 17
    • 34748820665 scopus 로고    scopus 로고
    • Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: Transposon exclusion by high-density DNA binding proteins
    • Manna D, Porwollik S, McClelland M, Tan R, Higgins NP. 2007. Microarray analysis of Mu transposition in Salmonella enterica, serovar Typhimurium: transposon exclusion by high-density DNA binding proteins. Mol Microbiol 66:315–328. https://doi.org/10.1111/j.1365-2958.2007.05915.x.
    • (2007) Mol Microbiol , vol.66 , pp. 315-328
    • Manna, D.1    Porwollik, S.2    McClelland, M.3    Tan, R.4    Higgins, N.P.5
  • 18
    • 84925883643 scopus 로고    scopus 로고
    • Identification of essential alphaproteobacterial genes reveals operational variability in conserved developmental and cell cycle systems
    • Curtis PD, Brun YV. 2014. Identification of essential alphaproteobacterial genes reveals operational variability in conserved developmental and cell cycle systems. Mol Microbiol 93:713–735. https://doi.org/10.1111/mmi.12686.
    • (2014) Mol Microbiol , vol.93 , pp. 713-735
    • Curtis, P.D.1    Brun, Y.V.2
  • 19
    • 84929224505 scopus 로고    scopus 로고
    • Tn-seq explorer: A tool for analysis of high-throughput sequencing data of transposon mutant libraries
    • Solaimanpour S, Sarmiento F, Mrázek J. 2015. Tn-seq explorer: a tool for analysis of high-throughput sequencing data of transposon mutant libraries. PLoS One 10:e0126070. https://doi.org/10.1371/journal.pone.0126070.
    • (2015) Plos One , vol.10
    • Solaimanpour, S.1    Sarmiento, F.2    Mrázek, J.3
  • 20
    • 0031902183 scopus 로고    scopus 로고
    • FtsK is a bifunctional protein involved in cell division and chromosome localization in Escherichia coli
    • Liu G, Draper GC, Donachie WD. 1998. FtsK is a bifunctional protein involved in cell division and chromosome localization in Escherichia coli. Mol Microbiol 29:893–903. https://doi.org/10.1046/j.1365-2958.1998.00986.x.
    • (1998) Mol Microbiol , vol.29 , pp. 893-903
    • Liu, G.1    Draper, G.C.2    Donachie, W.D.3
  • 21
    • 78649592020 scopus 로고    scopus 로고
    • Multiple regions along the Escherichia coli FtsK protein are implicated in cell division
    • Dubarry N, Possoz C, Barre F-X. 2010. Multiple regions along the Escherichia coli FtsK protein are implicated in cell division. Mol Microbiol 78:1088–1100. https://doi.org/10.1111/j.1365-2958.2010.07412.x.
    • (2010) Mol Microbiol , vol.78 , pp. 1088-1100
    • Dubarry, N.1    Possoz, C.2    Barre, F.-X.3
  • 23
    • 0031933996 scopus 로고    scopus 로고
    • Localization of cell division protein FtsK to the Escherichia coli septum and identification of a potential N-terminal targeting domain
    • Yu XC, Tran AH, Sun Q, Margolin W. 1998. Localization of cell division protein FtsK to the Escherichia coli septum and identification of a potential N-terminal targeting domain. J Bacteriol 180:1296–1304.
    • (1998) J Bacteriol , vol.180 , pp. 1296-1304
    • Yu, X.C.1    Tran, A.H.2    Sun, Q.3    Margolin, W.4
  • 24
    • 0034725994 scopus 로고    scopus 로고
    • Membrane topology of the N-terminus of the Escherichia coli FtsK division protein
    • Dorazi R, Dewar SJ. 2000. Membrane topology of the N-terminus of the Escherichia coli FtsK division protein. FEBS Lett 478:13–18. https://doi.org/10.1016/S0014-5793(00)01820-2.
    • (2000) FEBS Lett , vol.478 , pp. 13-18
    • Dorazi, R.1    Dewar, S.J.2
  • 25
    • 0031949032 scopus 로고    scopus 로고
    • FtsK is an essential cell division protein that is localized to the septum and induced as part of the SOS response
    • Wang L, Lutkenhaus J. 1998. FtsK is an essential cell division protein that is localized to the septum and induced as part of the SOS response. Mol Microbiol 29:731–740. https://doi.org/10.1046/j.1365-2958.1998.00958.x.
    • (1998) Mol Microbiol , vol.29 , pp. 731-740
    • Wang, L.1    Lutkenhaus, J.2
  • 26
    • 4344668509 scopus 로고    scopus 로고
    • Translation arrest of SecM is essential for the basal and regulated expression of SecA
    • Murakami A, Nakatogawa H, Ito K. 2004. Translation arrest of SecM is essential for the basal and regulated expression of SecA. Proc Natl Acad Sci U S A 101:12330–12335. https://doi.org/10.1073/pnas.0404907101.
    • (2004) Proc Natl Acad Sci U S A , vol.101 , pp. 12330-12335
    • Murakami, A.1    Nakatogawa, H.2    Ito, K.3
  • 27
    • 84885009677 scopus 로고    scopus 로고
    • A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data
    • DeJesus MA, Ioerger TR. 2013. A Hidden Markov Model for identifying essential and growth-defect regions in bacterial genomes from transposon insertion sequencing data. BMC Bioinformatics 14:303. https://doi.org/10.1186/1471-2105-14-303.
    • (2013) BMC Bioinformatics , vol.14 , pp. 303
    • Dejesus, M.A.1    Ioerger, T.R.2
  • 28
    • 84984986357 scopus 로고    scopus 로고
    • Combining Shigella Tn-seq data with gold-standard E. Coli gene deletion data suggests rare transitions between essential and non-essential gene functionality
    • Freed NE, Bumann D, Silander OK. 2016. Combining Shigella Tn-seq data with gold-standard E. coli gene deletion data suggests rare transitions between essential and non-essential gene functionality. BMC Microbiol 16:203. https://doi.org/10.1186/s12866-016-0818-0.
    • (2016) BMC Microbiol , vol.16 , Issue.203
    • Freed, N.E.1    Bumann, D.2    Silander, O.K.3
  • 29
    • 84864974258 scopus 로고    scopus 로고
    • ESSENTIALS: Software for rapid analysis of high throughput transposon insertion sequencing data
    • Zomer A, Burghout P, Bootsma HJ, Hermans PWM, van Hijum SAFT. 2012. ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data. PLoS One 7:e43012. https://doi.org/10.1371/journal.pone.0043012.
    • (2012) Plos One , vol.7
    • Zomer, A.1    Burghout, P.2    Bootsma, H.J.3    Hermans, P.W.M.4    van Hijum, S.A.F.T.5
  • 30
    • 84875251958 scopus 로고    scopus 로고
    • Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Metha-nococcus maripaludis
    • Sarmiento F, Mrázek J, Whitman WB. 2013. Genome-scale analysis of gene function in the hydrogenotrophic methanogenic archaeon Metha-nococcus maripaludis. Proc Natl Acad Sci U S A 110:4726–4731. https://doi.org/10.1073/pnas.1220225110.
    • (2013) Proc Natl Acad Sci U S A , vol.110 , pp. 4726-4731
    • Sarmiento, F.1    Mrázek, J.2    Whitman, W.B.3
  • 32
    • 0027120805 scopus 로고
    • Broad host range plasmids carrying the Escherichia coli lactose and galactose operons
    • Lodge J, Fear J, Busby S, Gunasekaran P, Kamini NR. 1992. Broad host range plasmids carrying the Escherichia coli lactose and galactose operons. FEMS Microbiol Lett 74:271–276. https://doi.org/10.1111/j.1574 -6968.1992.tb05378.x.
    • (1992) FEMS Microbiol Lett , vol.74 , pp. 271-276
    • Lodge, J.1    Fear, J.2    Busby, S.3    Gunasekaran, P.4    Kamini, N.R.5
  • 33
    • 84055223612 scopus 로고    scopus 로고
    • Translation of a minigene in the 5’ leader sequence of the enterohaemorrhagic Escherichia coli LEE1 transcription unit affects expression of the neighbouring downstream gene
    • Islam MS, Shaw RK, Frankel G, Pallen MJ, Busby SJW. 2012. Translation of a minigene in the 5’ leader sequence of the enterohaemorrhagic Escherichia coli LEE1 transcription unit affects expression of the neighbouring downstream gene. Biochem J 441:247–253. https://doi.org/10.1042/BJ20110912.
    • (2012) Biochem J , vol.441 , pp. 247-253
    • Islam, M.S.1    Shaw, R.K.2    Frankel, G.3    Pallen, M.J.4    Busby, S.J.W.5
  • 35
    • 0025754277 scopus 로고
    • Analysis of the altered mRNA stability (Ams) gene from Escherichia coli. Nucleotide sequence, transcriptional analysis, and homology of its product to MRP3, a mitochondrial ribosomal protein from Neurospora crassa
    • Claverie-Martin F, Diaz-Torres MR, Yancey SD, Kushner SR. 1991. Analysis of the altered mRNA stability (ams) gene from Escherichia coli. Nucleotide sequence, transcriptional analysis, and homology of its product to MRP3, a mitochondrial ribosomal protein from Neurospora crassa. J Biol Chem 266:2843–2851.
    • (1991) J Biol Chem , vol.266 , pp. 2843-2851
    • Claverie-Martin, F.1    Diaz-Torres, M.R.2    Yancey, S.D.3    Kushner, S.R.4
  • 36
    • 0036197752 scopus 로고    scopus 로고
    • RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters
    • Ow MC, Liu Q, Mohanty BK, Andrew ME, Maples VF, Kushner SR. 2002. RNase E levels in Escherichia coli are controlled by a complex regulatory system that involves transcription of the rne gene from three promoters. Mol Microbiol 43:159–171. https://doi.org/10.1046/j.1365 -2958.2002.02726.x.
    • (2002) Mol Microbiol , vol.43 , pp. 159-171
    • Ow, M.C.1    Liu, Q.2    Mohanty, B.K.3    Andrew, M.E.4    Maples, V.F.5    Kushner, S.R.6
  • 37
    • 0033568606 scopus 로고    scopus 로고
    • E-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor
    • E-dependent extracytoplasmic stress response is controlled by the regulated proteolysis of an anti-sigma factor. Genes Dev 13:2449–2461. https://doi.org/10.1101/gad.13.18.2449.
    • (1999) Genes Dev , vol.13 , pp. 2449-2461
    • Ades, S.E.1    Connolly, L.E.2    Alba, B.M.3    Gross, C.A.4
  • 39
    • 0029670766 scopus 로고    scopus 로고
    • Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA, and a truncated R1pA
    • Bass S, Gu Q, Christen A. 1996. Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA, and a truncated R1pA. J Bacteriol 178:1154–1161. https://doi.org/10.1128/jb.178.4.1154-1161.1996.
    • (1996) J Bacteriol , vol.178 , pp. 1154-1161
    • Bass, S.1    Gu, Q.2    Christen, A.3
  • 40
    • 0030066650 scopus 로고    scopus 로고
    • Characterization of degQ and degS, Escherichia coli genes encoding homologs of the DegP protease
    • Waller PR, Sauer RT. 1996. Characterization of degQ and degS, Escherichia coli genes encoding homologs of the DegP protease. J Bacteriol 178:1146–1153. https://doi.org/10.1128/jb.178.4.1146-1153.1996.
    • (1996) J Bacteriol , vol.178 , pp. 1146-1153
    • Waller, P.R.1    Sauer, R.T.2
  • 41
    • 66049121818 scopus 로고    scopus 로고
    • An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane
    • Malinverni JC, Silhavy TJ. 2009. An ABC transport system that maintains lipid asymmetry in the Gram-negative outer membrane. Proc Natl Acad Sci U S A 106:8009–8014. https://doi.org/10.1073/pnas.0903229106.
    • (2009) Proc Natl Acad Sci U S A , vol.106 , pp. 8009-8014
    • Malinverni, J.C.1    Silhavy, T.J.2
  • 42
    • 84987704895 scopus 로고    scopus 로고
    • Defining key roles for auxiliary proteins in an ABC transporter that maintains bacterial outer membrane lipid asymmetry
    • Thong S, Ercan B, Torta F, Fong ZY, Wong HYA, Wenk MR, Chng S-S. 2016. Defining key roles for auxiliary proteins in an ABC transporter that maintains bacterial outer membrane lipid asymmetry. Elife 5:e19042. https://doi.org/10.7554/eLife.19042.
    • (2016) Elife , vol.5
    • Thong, S.1    Ercan, B.2    Torta, F.3    Fong, Z.Y.4    Wong, H.Y.A.5    Wenk, M.R.6    Chng, S.-S.7
  • 43
    • 0035422651 scopus 로고    scopus 로고
    • Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli
    • Kato J, Katayama T. 2001. Hda, a novel DnaA-related protein, regulates the replication cycle in Escherichia coli. EMBO J 20:4253–4262. https://doi.org/10.1093/emboj/20.15.4253.
    • (2001) EMBO J , vol.20 , pp. 4253-4262
    • Kato, J.1    Katayama, T.2
  • 44
    • 33746604804 scopus 로고    scopus 로고
    • Hda-mediated inactivation of the DnaA protein and dnaA gene autoregulation act in concert to ensure homeostatic maintenance of the Escherichia coli chromosome
    • Riber L, Olsson JA, Jensen RB, Skovgaard O, Dasgupta S, Marinus MG, Løbner-Olesen A. 2006. Hda-mediated inactivation of the DnaA protein and dnaA gene autoregulation act in concert to ensure homeostatic maintenance of the Escherichia coli chromosome. Genes Dev 20: 2121–2134. https://doi.org/10.1101/gad.379506.
    • (2006) Genes Dev , vol.20 , pp. 2121-2134
    • Riber, L.1    Olsson, J.A.2    Jensen, R.B.3    Skovgaard, O.4    Dasgupta, S.5    Marinus, M.G.6    Løbner-Olesen, A.7
  • 45
    • 0037628613 scopus 로고    scopus 로고
    • Controlled initiation of chromosomal replication in Escherichia coli requires functional Hda protein
    • Camara JE, Skarstad K, Crooke E. 2003. Controlled initiation of chromosomal replication in Escherichia coli requires functional Hda protein. J Bacteriol 185:3244–3248. https://doi.org/10.1128/JB.185.10.3244-3248.2003.
    • (2003) J Bacteriol , vol.185 , pp. 3244-3248
    • Camara, J.E.1    Skarstad, K.2    Crooke, E.3
  • 46
    • 0037099742 scopus 로고    scopus 로고
    • TadA, an essential tRNA-specific adenosine deaminase from Escherichia coli
    • Wolf J, Gerber AP, Keller W. 2002. tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J 21:3841–3851. https://doi.org/10.1093/emboj/cdf362.
    • (2002) EMBO J , vol.21 , pp. 3841-3851
    • Wolf, J.1    Gerber, A.P.2    Keller, W.3
  • 47
    • 34147099429 scopus 로고    scopus 로고
    • Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli
    • Bubunenko M, Baker T, Court DL. 2007. Essentiality of ribosomal and transcription antitermination proteins analyzed by systematic gene replacement in Escherichia coli. J Bacteriol 189:2844–2853. https://doi.org/10.1128/JB.01713-06.
    • (2007) J Bacteriol , vol.189 , pp. 2844-2853
    • Bubunenko, M.1    Baker, T.2    Court, D.L.3
  • 48
    • 84977589257 scopus 로고    scopus 로고
    • Mutations affecting potassium import restore the viability of the Escherichia coli DNA polymerase III holD mutant
    • Durand A, Sinha AK, Dard-Dascot C, Michel B. 2016. Mutations affecting potassium import restore the viability of the Escherichia coli DNA polymerase III holD mutant. PLOS Genet 12:e1006114. https://doi.org/10.1371/journal.pgen.1006114.
    • (2016) PLOS Genet , vol.12
    • Durand, A.1    Sinha, A.K.2    Dard-Dascot, C.3    Michel, B.4
  • 49
    • 0141707650 scopus 로고    scopus 로고
    • Lethality of bypass polymerases in Escherichia coli cells with a defective clamp loader complex of DNA polymerase III
    • Viguera E, Petranovic M, Zahradka D, Germain K, Ehrlich DS, Michel B. 2003. Lethality of bypass polymerases in Escherichia coli cells with a defective clamp loader complex of DNA polymerase III. Mol Microbiol 50:193–204. https://doi.org/10.1046/j.1365-2958.2003.03658.x.
    • (2003) Mol Microbiol , vol.50 , pp. 193-204
    • Viguera, E.1    Petranovic, M.2    Zahradka, D.3    Germain, K.4    Ehrlich, D.S.5    Michel, B.6
  • 50
    • 84908336141 scopus 로고    scopus 로고
    • Ssb gene duplication restores the viability of ΔholC and ΔholD Escherichia coli mutants
    • Duigou S, Silvain M, Viguera E, Michel B. 2014. ssb gene duplication restores the viability of ΔholC and ΔholD Escherichia coli mutants. PLoS Genet 10:e1004719. https://doi.org/10.1371/journal.pgen.1004719.
    • (2014) Plos Genet , vol.10
    • Duigou, S.1    Silvain, M.2    Viguera, E.3    Michel, B.4
  • 52
    • 56749151013 scopus 로고    scopus 로고
    • Small membrane proteins found by comparative genomics and ribosome binding site models
    • Hemm MR, Paul BJ, Schneider TD, Storz G, Rudd KE. 2008. Small membrane proteins found by comparative genomics and ribosome binding site models. Mol Microbiol 70:1487–1501. https://doi.org/10.1111/j.1365 -2958.2008.06495.x.
    • (2008) Mol Microbiol , vol.70 , pp. 1487-1501
    • Hemm, M.R.1    Paul, B.J.2    Schneider, T.D.3    Storz, G.4    Rudd, K.E.5
  • 53
    • 0029785522 scopus 로고    scopus 로고
    • Stringent and growth-rate-dependent control of the gua operon of Escherichia coli K-12
    • Davies IJ, Drabble WT. 1996. Stringent and growth-rate-dependent control of the gua operon of Escherichia coli K-12. Microbiology 142: 2429–2437. https://doi.org/10.1099/00221287-142-9-2429.
    • (1996) Microbiology , vol.142 , pp. 2429-2437
    • Davies, I.J.1    Drabble, W.T.2
  • 54
    • 45149111446 scopus 로고    scopus 로고
    • Genetic interaction between the Escherichia coli AcpT phosphopantetheinyl transferase and the YejM inner membrane protein
    • De Lay NR, Cronan JE. 2008. Genetic interaction between the Escherichia coli AcpT phosphopantetheinyl transferase and the YejM inner membrane protein. Genetics 178:1327–1337. https://doi.org/10.1534/genetics.107.081836.
    • (2008) Genetics , vol.178 , pp. 1327-1337
    • de Lay, N.R.1    Cronan, J.E.2
  • 55
    • 19744376674 scopus 로고    scopus 로고
    • Global topology analysis of the Escherichia coli inner membrane proteome
    • Daley DO, Rapp M, Granseth E, Melén K, Drew D, von Heijne G. 2005. Global topology analysis of the Escherichia coli inner membrane proteome. Science 308:1321–1323.
    • (2005) Science , vol.308 , pp. 1321-1323
    • Daley, D.O.1    Rapp, M.2    Granseth, E.3    Melén, K.4    Drew, D.5    von Heijne, G.6
  • 56
    • 84926637728 scopus 로고    scopus 로고
    • Delivery of cardiolipins to the Salmonella outer membrane is necessary for survival within host tissues and virulence
    • Dalebroux ZD, Edrozo MB, Pfuetzner RA, Ressl S, Kulasekara BR, Blanc M-P, Miller SI. 2015. Delivery of cardiolipins to the Salmonella outer membrane is necessary for survival within host tissues and virulence. Cell Host Microbe 17:441–451. https://doi.org/10.1016/j.chom.2015.03.003.
    • (2015) Cell Host Microbe , vol.17 , pp. 441-451
    • Dalebroux, Z.D.1    Edrozo, M.B.2    Pfuetzner, R.A.3    Ressl, S.4    Kulasekara, B.R.5    Blanc, M.-P.6    Miller, S.I.7
  • 57
    • 12244261594 scopus 로고    scopus 로고
    • Regulation of capsule synthesis and cell motility in Salmonella enterica by the essential gene igaA
    • Cano DA, Domínguez-Bernal G, Tierrez A, Garcia-Del Portillo F, Casa-desús J. 2002. Regulation of capsule synthesis and cell motility in Salmonella enterica by the essential gene igaA. Genetics 162:1513–1523.
    • (2002) Genetics , vol.162 , pp. 1513-1523
    • Cano, D.A.1    Domínguez-Bernal, G.2    Tierrez, A.3    Garcia-Del Portillo, F.4    Casa-Desús, J.5
  • 59
    • 0030936995 scopus 로고    scopus 로고
    • Crystal structure of the nucleotide exchange factor GrpE bound to the ATPase domain of the molecular chaperone DnaK
    • Harrison CJ, Hayer-Hartl M, Di Liberto M, Hartl F, Kuriyan J. 1997. Crystal structure of the nucleotide exchange factor GrpE bound to the ATPase domain of the molecular chaperone DnaK. Science 276:431–435. https://doi.org/10.1126/science.276.5311.431.
    • (1997) Science , vol.276 , pp. 431-435
    • Harrison, C.J.1    Hayer-Hartl, M.2    Di Liberto, M.3    Hartl, F.4    Kuriyan, J.5
  • 60
    • 0024406857 scopus 로고
    • A novel genetic system to detect protein-protein interactions
    • Fields S, Song O. 1989. A novel genetic system to detect protein-protein interactions. Nature 340:245–246. https://doi.org/10.1038/340245a0.
    • (1989) Nature , vol.340 , pp. 245-246
    • Fields, S.1    Song, O.2
  • 61
    • 0032510783 scopus 로고    scopus 로고
    • A bacterial two-hybrid system based on a reconstituted signal transduction pathway
    • Karimova G, Pidoux J, Ullmann A, Ladant D. 1998. A bacterial two-hybrid system based on a reconstituted signal transduction pathway. Proc Natl Acad Sci U S A 95:5752–5756.
    • (1998) Proc Natl Acad Sci U S A , vol.95 , pp. 5752-5756
    • Karimova, G.1    Pidoux, J.2    Ullmann, A.3    Ladant, D.4
  • 62
    • 33749005086 scopus 로고    scopus 로고
    • In vivo and in vitro protein solubility assays using split GFP
    • Cabantous S, Waldo GS. 2006. In vivo and in vitro protein solubility assays using split GFP. Nat Methods 3:845–854. https://doi.org/10.1038/nmeth932.
    • (2006) Nat Methods , vol.3 , pp. 845-854
    • Cabantous, S.1    Waldo, G.S.2
  • 63
    • 79957852570 scopus 로고    scopus 로고
    • Complex transcrip- tional organization regulates an Escherichia coli locus implicated in lipopolysaccharide biogenesis
    • Martorana AM, Sperandeo P, Polissi A, Dehò G. 2011. Complex transcrip- tional organization regulates an Escherichia coli locus implicated in lipopolysaccharide biogenesis. Res Microbiol 162:470–482. https://doi.org/10.1016/j.resmic.2011.03.007.
    • (2011) Res Microbiol , vol.162 , pp. 470-482
    • Martorana, A.M.1    Sperandeo, P.2    Polissi, A.3    Dehò, G.4
  • 64
    • 33745974919 scopus 로고    scopus 로고
    • Non-essential KDO biosynthesis and new essential cell envelope biogenesis genes in the Escherichia coli yrbG–yhbG locus
    • Sperandeo P, Pozzi C, Dehò G, Polissi A. 2006. Non-essential KDO biosynthesis and new essential cell envelope biogenesis genes in the Escherichia coli yrbG–yhbG locus. Res Microbiol 157:547–558. https://doi.org/10.1016/j.resmic.2005.11.014.
    • (2006) Res Microbiol , vol.157 , pp. 547-558
    • Sperandeo, P.1    Pozzi, C.2    Dehò, G.3    Polissi, A.4
  • 65
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko KA, Wanner BL. 2000. One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97:6640–6645. https://doi.org/10.1073/pnas.120163297.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 66
    • 0017807890 scopus 로고
    • Construction and characterization of ampli-fiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid
    • Chang AC, Cohen SN. 1978. Construction and characterization of ampli-fiable multicopy DNA cloning vehicles derived from the P15A cryptic miniplasmid. J Bacteriol 134:1141–1156.
    • (1978) J Bacteriol , vol.134 , pp. 1141-1156
    • Chang, A.C.1    Cohen, S.N.2
  • 67
    • 0031573415 scopus 로고    scopus 로고
    • Comparison of DNA sequences with protein sequences
    • Pearson WR, Wood T, Zhang Z, Miller W. 1997. Comparison of DNA sequences with protein sequences. Genomics 46:24–36. https://doi.org/10.1006/geno.1997.4995.
    • (1997) Genomics , vol.46 , pp. 24-36
    • Pearson, W.R.1    Wood, T.2    Zhang, Z.3    Miller, W.4
  • 68
    • 84905049901 scopus 로고    scopus 로고
    • Trimmomatic: A flexible trimmer for Illumina sequence data
    • Bolger AM, Lohse M, Usadel B. 2014. Trimmomatic: a flexible trimmer for Illumina sequence data. Bioinformatics 30:2114–2120. https://doi.org/10.1093/bioinformatics/btu170.
    • (2014) Bioinformatics , vol.30 , pp. 2114-2120
    • Bolger, A.M.1    Lohse, M.2    Usadel, B.3
  • 69
    • 84891822155 scopus 로고    scopus 로고
    • RefSeq microbial genomes database: New representation and annotation strategy
    • Tatusova T, Ciufo S, Fedorov B, O’Neill K, Tolstoy I. 2014. RefSeq microbial genomes database: new representation and annotation strategy. Nucleic Acids Res 42:D553–D559. https://doi.org/10.1093/nar/gkt1274.
    • (2014) Nucleic Acids Res , vol.42 , pp. D553-D559
    • Tatusova, T.1    Ciufo, S.2    Fedorov, B.3    O’Neill, K.4    Tolstoy, I.5
  • 71
    • 77951770756 scopus 로고    scopus 로고
    • BEDTools: A flexible suite of utilities for comparing genomic features
    • Quinlan AR, Hall IM. 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26:841–842. https://doi.org/10.1093/bioinformatics/btq033.
    • (2010) Bioinformatics , vol.26 , pp. 841-842
    • Quinlan, A.R.1    Hall, I.M.2
  • 73
    • 84875904855 scopus 로고    scopus 로고
    • EcoGene 3.0
    • Zhou J, Rudd KE. 2013. EcoGene 3.0. Nucleic Acids Res 41:D613–D624. https://doi.org/10.1093/nar/gks1235.
    • (2013) Nucleic Acids Res , vol.41 , pp. D613-D624
    • Zhou, J.1    Rudd, K.E.2
  • 74
    • 56449107474 scopus 로고    scopus 로고
    • BioVenn—a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams
    • Hulsen T, de Vlieg J, Alkema W. 2008. BioVenn—a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams. BMC Genomics 9:488. https://doi.org/10.1186/1471-2164-9-488.
    • (2008) BMC Genomics , vol.9 , pp. 488
    • Hulsen, T.1    de Vlieg, J.2    Alkema, W.3
  • 75
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler transform
    • Li H, Durbin R. 2009. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25:1754–1760. https://doi.org/10.1093/bioinformatics/btp324.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.