메뉴 건너뛰기




Volumn 169, Issue 3, 2018, Pages 145-156

Adaptation of Escherichia coli to long-term batch culture in various rich media

Author keywords

Adaptive evolution; GASP; LTSP; Rich media

Indexed keywords

ADAPTATION; ALLELE; ARTICLE; BACTERIUM CULTURE; EPISTASIS; ESCHERICHIA COLI; EVOLUTIONARY ADAPTATION; GENE FREQUENCY; GENE MUTATION; GENETIC CONSERVATION; GENETIC VARIABILITY; GENOTYPE; NONHUMAN; NUTRIENT CYCLING; PHENOTYPE; PRIORITY JOURNAL; PURIFYING SELECTION; WASTE; WHOLE GENOME SEQUENCING; BATCH CELL CULTURE; CULTURE MEDIUM; GENETIC VARIATION; GENOTYPE ENVIRONMENT INTERACTION; MUTATION; NUTRITION; PHYSIOLOGY; REPRODUCTIVE FITNESS;

EID: 85042934723     PISSN: 09232508     EISSN: 17697123     Source Type: Journal    
DOI: 10.1016/j.resmic.2018.01.003     Document Type: Article
Times cited : (11)

References (55)
  • 1
    • 84888001845 scopus 로고    scopus 로고
    • Genome dynamics during experimental evolution
    • Barrick, J.E., Lenski, R.E., Genome dynamics during experimental evolution. Nat Rev Genet 14 (2013), 827–839, 10.1038/nrg3564.
    • (2013) Nat Rev Genet , vol.14 , pp. 827-839
    • Barrick, J.E.1    Lenski, R.E.2
  • 2
    • 0026279651 scopus 로고
    • Long-term experimental evolution in Escherichia coli. I. adaptation and divergence during 2,000 generations
    • Lenski, R.E., Rose, M.R., Simpson, S.C., Tadler, S.C., Long-term experimental evolution in Escherichia coli. I. adaptation and divergence during 2,000 generations. Am Nat 138 (1991), 1315–1341, 10.1086/285289.
    • (1991) Am Nat , vol.138 , pp. 1315-1341
    • Lenski, R.E.1    Rose, M.R.2    Simpson, S.C.3    Tadler, S.C.4
  • 3
    • 79957948242 scopus 로고    scopus 로고
    • Negative epistasis between beneficial mutations in an evolving bacterial population
    • Khan, A.I., Dinh, D.M., Schneider, D., Lenski, R.E., Cooper, T.F., Negative epistasis between beneficial mutations in an evolving bacterial population. Science 332 (2011), 1193–1196.
    • (2011) Science , vol.332 , pp. 1193-1196
    • Khan, A.I.1    Dinh, D.M.2    Schneider, D.3    Lenski, R.E.4    Cooper, T.F.5
  • 4
    • 84866944595 scopus 로고    scopus 로고
    • Genomic analysis of a key innovation in an experimental Escherichia coli population
    • Blount, Z.D., Barrick, J.E., Davidson, C.J., Lenski, R.E., Genomic analysis of a key innovation in an experimental Escherichia coli population. Nature 489 (2012), 513–518, 10.1038/nature11514.
    • (2012) Nature , vol.489 , pp. 513-518
    • Blount, Z.D.1    Barrick, J.E.2    Davidson, C.J.3    Lenski, R.E.4
  • 5
    • 84961164027 scopus 로고    scopus 로고
    • Rapid evolution of citrate utilization by Escherichia coli by direct selection requires citT and dctA
    • Van Hofwegen, D.J., Hovde, C.J., Minnich, S.A., Rapid evolution of citrate utilization by Escherichia coli by direct selection requires citT and dctA. J Bacteriol 198 (2016), 1022–1034, 10.1128/JB.00831-15.
    • (2016) J Bacteriol , vol.198 , pp. 1022-1034
    • Van Hofwegen, D.J.1    Hovde, C.J.2    Minnich, S.A.3
  • 6
    • 75749144287 scopus 로고    scopus 로고
    • Experimental evolution of a plant pathogen into a legume symbiont
    • Marchetti, M., Capela, D., Glew, M., Cruveiller, S., Chane-Woon-Ming, B., Gris, C., et al. Experimental evolution of a plant pathogen into a legume symbiont. PLoS Biol, 8, 2010, e1000280, 10.1371/journal.pbio.1000280.
    • (2010) PLoS Biol , vol.8 , pp. e1000280
    • Marchetti, M.1    Capela, D.2    Glew, M.3    Cruveiller, S.4    Chane-Woon-Ming, B.5    Gris, C.6
  • 7
    • 33744482546 scopus 로고    scopus 로고
    • Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor
    • Velicer, G.J., Raddatz, G., Keller, H., Deiss, S., Lanz, C., Dinkelacker, I., et al. Comprehensive mutation identification in an evolved bacterial cooperator and its cheating ancestor. Proc Natl Acad Sci U S A 103 (2006), 8107–8112, 10.1073/pnas.0510740103.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 8107-8112
    • Velicer, G.J.1    Raddatz, G.2    Keller, H.3    Deiss, S.4    Lanz, C.5    Dinkelacker, I.6
  • 8
    • 85020555093 scopus 로고    scopus 로고
    • Adaptation of Escherichia coli to long-term serial passage in complex medium: evidence of parallel evolution
    • Kram, K.E., Geiger, C., Ismail, W.M., Lee, H., Tang, H., Foster, P.L., et al. Adaptation of Escherichia coli to long-term serial passage in complex medium: evidence of parallel evolution. mSystems 2 (2017), e00192–16, 10.1128/mSystems.00192-16.
    • (2017) mSystems , vol.2 , pp. e00192-16
    • Kram, K.E.1    Geiger, C.2    Ismail, W.M.3    Lee, H.4    Tang, H.5    Foster, P.L.6
  • 9
    • 85020503243 scopus 로고    scopus 로고
    • Laboratory evolution to alternating substrate environments yields distinct phenotypic and genetic adaptive strategies
    • Sandberg, T.E., Lloyd, C.J., Palsson, B.O., Feist, A.M., Laboratory evolution to alternating substrate environments yields distinct phenotypic and genetic adaptive strategies. Appl Environ Microbiol 83 (2017), e00410–e00417, 10.1128/AEM.00410-17.
    • (2017) Appl Environ Microbiol , vol.83 , pp. e00410-e00417
    • Sandberg, T.E.1    Lloyd, C.J.2    Palsson, B.O.3    Feist, A.M.4
  • 10
    • 67749132534 scopus 로고    scopus 로고
    • Directed evolution of ionizing radiation resistance in Escherichia coli
    • Harris, D.R., Pollock, S.V., Wood, E.A., Goiffon, R.J., Klingele, A.J., Cabot, E.L., et al. Directed evolution of ionizing radiation resistance in Escherichia coli. J Bacteriol 191 (2009), 5240–5252, 10.1128/JB.00502-09.
    • (2009) J Bacteriol , vol.191 , pp. 5240-5252
    • Harris, D.R.1    Pollock, S.V.2    Wood, E.A.3    Goiffon, R.J.4    Klingele, A.J.5    Cabot, E.L.6
  • 11
    • 84987597485 scopus 로고    scopus 로고
    • Spatiotemporal microbial evolution on antibiotic landscapes
    • Baym, M., Lieberman, T.D., Kelsic, E.D., Chait, R., Gross, R., Yelin, I., et al. Spatiotemporal microbial evolution on antibiotic landscapes. Science 353 (2016), 1147–1151, 10.1126/science.aag0822.
    • (2016) Science , vol.353 , pp. 1147-1151
    • Baym, M.1    Lieberman, T.D.2    Kelsic, E.D.3    Chait, R.4    Gross, R.5    Yelin, I.6
  • 14
    • 80053144267 scopus 로고    scopus 로고
    • Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments
    • Zhang, Q., Lambert, G., Liao, D., Kim, H., Robin, K., Tung, C., et al. Acceleration of emergence of bacterial antibiotic resistance in connected microenvironments. Science 333 (2011), 1764–1767, 10.1126/science.1208747.
    • (2011) Science , vol.333 , pp. 1764-1767
    • Zhang, Q.1    Lambert, G.2    Liao, D.3    Kim, H.4    Robin, K.5    Tung, C.6
  • 15
    • 84898637077 scopus 로고    scopus 로고
    • Adaptation of Escherichia coli to elevated sodium concentrations increases cation tolerance and enables greater lactic acid production
    • Wu, X., Altman, R., Eiteman, M.A., Altman, E., Adaptation of Escherichia coli to elevated sodium concentrations increases cation tolerance and enables greater lactic acid production. Appl Environ Microbiol 80 (2014), 2880–2888, 10.1128/AEM.03804-13.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 2880-2888
    • Wu, X.1    Altman, R.2    Eiteman, M.A.3    Altman, E.4
  • 16
    • 84903458015 scopus 로고    scopus 로고
    • Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria
    • Haft, R.J.F., Keating, D.H., Schwaegler, T., Schwalbach, M.S., Vinokur, J., Tremaine, M., et al. Correcting direct effects of ethanol on translation and transcription machinery confers ethanol tolerance in bacteria. Proc Natl Acad Sci U S A 111 (2014), E2576–E2585, 10.1073/pnas.1401853111.
    • (2014) Proc Natl Acad Sci U S A , vol.111 , pp. E2576-E2585
    • Haft, R.J.F.1    Keating, D.H.2    Schwaegler, T.3    Schwalbach, M.S.4    Vinokur, J.5    Tremaine, M.6
  • 17
    • 84940644376 scopus 로고    scopus 로고
    • Phenotypic convergence in bacterial adaptive evolution to ethanol stress
    • Horinouchi, T., Suzuki, S., Hirasawa, T., Ono, N., Yomo, T., Shimizu, H., et al. Phenotypic convergence in bacterial adaptive evolution to ethanol stress. BMC Evol Biol, 15, 2015, 180, 10.1186/s12862-015-0454-6.
    • (2015) BMC Evol Biol , vol.15 , pp. 180
    • Horinouchi, T.1    Suzuki, S.2    Hirasawa, T.3    Ono, N.4    Yomo, T.5    Shimizu, H.6
  • 18
    • 84940460233 scopus 로고    scopus 로고
    • Constraints on adaptation of Escherichia coli to mixed-resource environments increase over time
    • Satterwhite, R.S., Cooper, T.F., Constraints on adaptation of Escherichia coli to mixed-resource environments increase over time. Evolution 69 (2015), 2067–2078, 10.1111/evo.12710.
    • (2015) Evolution , vol.69 , pp. 2067-2078
    • Satterwhite, R.S.1    Cooper, T.F.2
  • 19
    • 84958729913 scopus 로고    scopus 로고
    • Adaptation of Escherichia coli to glucose promotes evolvability in lactose
    • Phillips, K.N., Castillo, G., Wünsche, A., Cooper, T.F., Adaptation of Escherichia coli to glucose promotes evolvability in lactose. Evolution 70 (2016), 465–470, 10.1111/evo.12849.
    • (2016) Evolution , vol.70 , pp. 465-470
    • Phillips, K.N.1    Castillo, G.2    Wünsche, A.3    Cooper, T.F.4
  • 20
    • 84919684031 scopus 로고    scopus 로고
    • Mutations in global regulators lead to metabolic selection during adaptation to complex environments
    • Saxer, G., Krepps, M.D., Merkley, E.D., Ansong, C., Deatherage Kaiser, B.L., Valovska, M.-T., et al. Mutations in global regulators lead to metabolic selection during adaptation to complex environments. PLoS Genet, 10, 2014, e1004872, 10.1371/journal.pgen.1004872.
    • (2014) PLoS Genet , vol.10 , pp. e1004872
    • Saxer, G.1    Krepps, M.D.2    Merkley, E.D.3    Ansong, C.4    Deatherage Kaiser, B.L.5    Valovska, M.-T.6
  • 21
    • 84873854693 scopus 로고    scopus 로고
    • Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments
    • Puentes-Téllez, P.E., Hansen, M.A., Sørensen, S.J., van Elsas, J.D., Adaptation and heterogeneity of Escherichia coli MC1000 growing in complex environments. Appl Environ Microbiol 79 (2013), 1008–1017, 10.1128/AEM.02920-12.
    • (2013) Appl Environ Microbiol , vol.79 , pp. 1008-1017
    • Puentes-Téllez, P.E.1    Hansen, M.A.2    Sørensen, S.J.3    van Elsas, J.D.4
  • 22
    • 0031876504 scopus 로고    scopus 로고
    • Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli
    • Treves, D.S., Manning, S., Adams, J., Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli. Mol Biol Evol 15 (1998), 789–797.
    • (1998) Mol Biol Evol , vol.15 , pp. 789-797
    • Treves, D.S.1    Manning, S.2    Adams, J.3
  • 23
    • 84906798408 scopus 로고    scopus 로고
    • The functional basis of adaptive evolution in chemostats
    • Gresham, D., Hong, J., The functional basis of adaptive evolution in chemostats. FEMS Microbiol Rev 39 (2014), 2–16, 10.1111/1574-6976.12082.
    • (2014) FEMS Microbiol Rev , vol.39 , pp. 2-16
    • Gresham, D.1    Hong, J.2
  • 24
    • 33746615552 scopus 로고    scopus 로고
    • Clonal adaptive radiation in a constant environment
    • Maharjan, R., Seeto, S., Notley-McRobb, L., Ferenci, T., Clonal adaptive radiation in a constant environment. Science 313 (2006), 514–517.
    • (2006) Science , vol.313 , pp. 514-517
    • Maharjan, R.1    Seeto, S.2    Notley-McRobb, L.3    Ferenci, T.4
  • 25
    • 85041546363 scopus 로고    scopus 로고
    • Genomewide mutational diversity in Escherichia coli population evolving in prolonged stationary phase
    • e00059–17
    • Chib, S., Ali, F., Seshasayee, A.S.N., Genomewide mutational diversity in Escherichia coli population evolving in prolonged stationary phase. mSphere, 2, 2017 e00059–17.
    • (2017) mSphere , vol.2
    • Chib, S.1    Ali, F.2    Seshasayee, A.S.N.3
  • 26
    • 2942650309 scopus 로고    scopus 로고
    • Escherichia coli evolution during stationary phase
    • Zinser, E.R., Kolter, R., Escherichia coli evolution during stationary phase. Res Microbiol 155 (2004), 328–336, 10.1016/j.resmic.2004.01.014.
    • (2004) Res Microbiol , vol.155 , pp. 328-336
    • Zinser, E.R.1    Kolter, R.2
  • 27
    • 0033912882 scopus 로고    scopus 로고
    • Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12
    • Zinser, E.R., Kolter, R., Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12. J Bacteriol 182 (2000), 4361–4365, 10.1128/JB.182.15.4361-4365.2000.
    • (2000) J Bacteriol , vol.182 , pp. 4361-4365
    • Zinser, E.R.1    Kolter, R.2
  • 28
    • 85030615583 scopus 로고    scopus 로고
    • Rapid Genetic adaptation during the first four months of survival under resource exhaustion
    • Avrani, S., Bolotin, E., Katz, S., Hershberg, R., Rapid Genetic adaptation during the first four months of survival under resource exhaustion. Mol Biol Evol 34 (2017), 1758–1769, 10.1093/molbev/msx118.
    • (2017) Mol Biol Evol , vol.34 , pp. 1758-1769
    • Avrani, S.1    Bolotin, E.2    Katz, S.3    Hershberg, R.4
  • 29
    • 0027510647 scopus 로고
    • Microbial competition: Escherichia coli mutants that take over stationary phase cultures
    • Zambrano, M.M., Siegele, D.A., Almirón, M., Tormo, A., Kolter, R., Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259 (1993), 1757–1760.
    • (1993) Science , vol.259 , pp. 1757-1760
    • Zambrano, M.M.1    Siegele, D.A.2    Almirón, M.3    Tormo, A.4    Kolter, R.5
  • 30
    • 0041817649 scopus 로고    scopus 로고
    • Bacterial evolution through the selective loss of beneficial genes: trade-offs in expression involving two loci
    • Zinser, E.R., Schneider, D., Blot, M., Kolter, R., Bacterial evolution through the selective loss of beneficial genes: trade-offs in expression involving two loci. Genetics 164 (2003), 1271–1277.
    • (2003) Genetics , vol.164 , pp. 1271-1277
    • Zinser, E.R.1    Schneider, D.2    Blot, M.3    Kolter, R.4
  • 31
    • 0033616769 scopus 로고    scopus 로고
    • Evolution of microbial diversity during prolonged starvation
    • Finkel, S.E., Kolter, R., Evolution of microbial diversity during prolonged starvation. Proc Natl Acad Sci U S A 96 (1999), 4023–4027, 10.1073/PNAS.96.7.4023.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 4023-4027
    • Finkel, S.E.1    Kolter, R.2
  • 32
    • 85014850829 scopus 로고    scopus 로고
    • Density-dependent recycling promotes the long-term survival of bacterial populations during periods of starvation
    • Takano, S., Pawlowska, B.J., Gudelj, I., Yomo, T., Tsuru, S., Density-dependent recycling promotes the long-term survival of bacterial populations during periods of starvation. mBio 8 (2017), e02336–16, 10.1128/mBio.02336-16.
    • (2017) mBio , vol.8 , pp. e02336-16
    • Takano, S.1    Pawlowska, B.J.2    Gudelj, I.3    Yomo, T.4    Tsuru, S.5
  • 33
    • 84876850007 scopus 로고    scopus 로고
    • The environment affects epistatic interactions to alter the topology of an empirical fitness landscape
    • Flynn, K.M., Cooper, T.F., Moore, F.B.-G., Cooper, V.S., The environment affects epistatic interactions to alter the topology of an empirical fitness landscape. PLoS Genet, 9, 2013, e1003426, 10.1371/journal.pgen.1003426.
    • (2013) PLoS Genet , vol.9 , pp. e1003426
    • Flynn, K.M.1    Cooper, T.F.2    Moore, F.B.-G.3    Cooper, V.S.4
  • 34
    • 31544474634 scopus 로고    scopus 로고
    • Long-term survival during stationary phase: evolution and the GASP phenotype
    • Finkel, S.E., Long-term survival during stationary phase: evolution and the GASP phenotype. Nat Rev Microbiol 4 (2006), 113–120, 10.1038/nrmicro1340.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 113-120
    • Finkel, S.E.1
  • 35
    • 0030602818 scopus 로고    scopus 로고
    • GASPing for life in stationary phase
    • Zambrano, M.M., Kolter, R., GASPing for life in stationary phase. Cell 86 (1996), 181–184.
    • (1996) Cell , vol.86 , pp. 181-184
    • Zambrano, M.M.1    Kolter, R.2
  • 36
    • 31544443719 scopus 로고
    • Bacteria Growth and Reproduction
    • Charles C. Thomas Springfield
    • Gay, F.P., Bacteria Growth and Reproduction. 1935, Charles C. Thomas, Springfield.
    • (1935)
    • Gay, F.P.1
  • 37
    • 84894028698 scopus 로고    scopus 로고
    • Culture volume and vessel affect long-term survival, mutation frequency, and oxidative stress of Escherichia coli
    • Kram, K.E., Finkel, S.E., Culture volume and vessel affect long-term survival, mutation frequency, and oxidative stress of Escherichia coli. Appl Environ Microbiol 80 (2014), 1732–1738, 10.1128/AEM.03150-13.
    • (2014) Appl Environ Microbiol , vol.80 , pp. 1732-1738
    • Kram, K.E.1    Finkel, S.E.2
  • 38
    • 84930805496 scopus 로고    scopus 로고
    • Rich Medium composition affects Escherichia coli survival, glycation, and mutation frequency during long-term batch culture
    • Kram, K.E., Finkel, S.E., Rich Medium composition affects Escherichia coli survival, glycation, and mutation frequency during long-term batch culture. Appl Environ Microbiol 81 (2015), 4442–4450, 10.1128/AEM.00722-15.
    • (2015) Appl Environ Microbiol , vol.81 , pp. 4442-4450
    • Kram, K.E.1    Finkel, S.E.2
  • 39
    • 79955590028 scopus 로고    scopus 로고
    • Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape
    • Kvitek, D.J., Sherlock, G., Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape. PLoS Genet, 7, 2011, e1002056, 10.1371/journal.pgen.1002056.
    • (2011) PLoS Genet , vol.7 , pp. e1002056
    • Kvitek, D.J.1    Sherlock, G.2
  • 40
    • 79957958115 scopus 로고    scopus 로고
    • Diminishing returns epistasis among beneficial mutations decelerates adaptation
    • Chou, H.-H., Chiu, H.-C., Delaney, N.F., Segrè D., Marx, C.J., Diminishing returns epistasis among beneficial mutations decelerates adaptation. Science 332 (2011), 1190–1192.
    • (2011) Science , vol.332 , pp. 1190-1192
    • Chou, H.-H.1    Chiu, H.-C.2    Delaney, N.F.3    Segrè, D.4    Marx, C.J.5
  • 41
    • 84888213196 scopus 로고    scopus 로고
    • Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment
    • Kvitek, D.J., Sherlock, G., Whole genome, whole population sequencing reveals that loss of signaling networks is the major adaptive strategy in a constant environment. PLoS Genet, 9, 2013, e1003972, 10.1371/journal.pgen.1003972.
    • (2013) PLoS Genet , vol.9 , pp. e1003972
    • Kvitek, D.J.1    Sherlock, G.2
  • 42
    • 84941729535 scopus 로고    scopus 로고
    • Effect of global regulators RpoS and cyclic-AMP/CRP on the catabolome and transcriptome of Escherichia coli K12 during carbon- and energy-limited growth
    • Franchini, A.G., Ihssen, J., Egli, T., Andersson, L., Enfors, S., Neubauer, P., Effect of global regulators RpoS and cyclic-AMP/CRP on the catabolome and transcriptome of Escherichia coli K12 during carbon- and energy-limited growth. PLoS One, 10, 2015, e0133793, 10.1371/journal.pone.0133793.
    • (2015) PLoS One , vol.10 , pp. e0133793
    • Franchini, A.G.1    Ihssen, J.2    Egli, T.3    Andersson, L.4    Enfors, S.5    Neubauer, P.6
  • 43
    • 84959207087 scopus 로고    scopus 로고
    • The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing
    • Achaz, G., Rodriguez-Verdugo, A., Gaut, B.S., Tenaillon, O., The reproducibility of adaptation in the light of experimental evolution with whole genome sequencing. Adv Exp Med Biol 781 (2014), 211–231, 10.1007/978-94-007-7347-9_11.
    • (2014) Adv Exp Med Biol , vol.781 , pp. 211-231
    • Achaz, G.1    Rodriguez-Verdugo, A.2    Gaut, B.S.3    Tenaillon, O.4
  • 44
    • 84867339877 scopus 로고    scopus 로고
    • Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing
    • Lee, H., Popodi, E., Tang, H., Foster, P.L., Rate and molecular spectrum of spontaneous mutations in the bacterium Escherichia coli as determined by whole-genome sequencing. Proc Natl Acad Sci U S A 109 (2012), E2774–E2783, 10.1073/pnas.1210309109.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. E2774-E2783
    • Lee, H.1    Popodi, E.2    Tang, H.3    Foster, P.L.4
  • 45
    • 0034612342 scopus 로고    scopus 로고
    • One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
    • Datsenko, K.A., Wanner, B.L., One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97 (2000), 6640–6645, 10.1073/pnas.120163297.
    • (2000) Proc Natl Acad Sci U S A , vol.97 , pp. 6640-6645
    • Datsenko, K.A.1    Wanner, B.L.2
  • 46
    • 67649884743 scopus 로고    scopus 로고
    • Fast and accurate short read alignment with Burrows-Wheeler Transform
    • Li, H., Durbin, R., Fast and accurate short read alignment with Burrows-Wheeler Transform. Bioinformatics 25 (2009), 1754–1760.
    • (2009) Bioinformatics , vol.25 , pp. 1754-1760
    • Li, H.1    Durbin, R.2
  • 47
    • 43149090031 scopus 로고    scopus 로고
    • Simple generation of site-directed point mutations in the Escherichia coli chromosome using Red®/ET® Recombination
    • Heermann, R., Zeppenfeld, T., Jung, K., Simple generation of site-directed point mutations in the Escherichia coli chromosome using Red®/ET® Recombination. Microb Cell Fact, 7, 2008, 14, 10.1186/1475-2859-7-14.
    • (2008) Microb Cell Fact , vol.7 , pp. 14
    • Heermann, R.1    Zeppenfeld, T.2    Jung, K.3
  • 48
    • 17644393469 scopus 로고    scopus 로고
    • SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli
    • Hansen, A.-M., Qiu, Y., Yeh, N., Blattner, F.R., Durfee, T., Jin, D.J., SspA is required for acid resistance in stationary phase by downregulation of H-NS in Escherichia coli. Mol Microbiol 56 (2005), 719–734, 10.1111/j.1365-2958.2005.04567.x.
    • (2005) Mol Microbiol , vol.56 , pp. 719-734
    • Hansen, A.-M.1    Qiu, Y.2    Yeh, N.3    Blattner, F.R.4    Durfee, T.5    Jin, D.J.6
  • 49
    • 3242663669 scopus 로고    scopus 로고
    • Glycation of proteins in Escherichia coli: effect of nutrient broth ingredients on glycation
    • Dimitrova, R., Mironova, R., Ivanov, I., Glycation of proteins in Escherichia coli: effect of nutrient broth ingredients on glycation. Biotechnol Biotechnol Equip 18 (2004), 99–103, 10.1080/13102818.2004.10817094.
    • (2004) Biotechnol Biotechnol Equip , vol.18 , pp. 99-103
    • Dimitrova, R.1    Mironova, R.2    Ivanov, I.3
  • 50
    • 0035110510 scopus 로고    scopus 로고
    • Evidence for non-enzymatic glycosylation in Escherichia coli
    • Mironova, R., Niwa, T., Hayashi, H., Dimitrova, R., Ivanov, I., Evidence for non-enzymatic glycosylation in Escherichia coli. Mol Microbiol 39 (2001), 1061–1068.
    • (2001) Mol Microbiol , vol.39 , pp. 1061-1068
    • Mironova, R.1    Niwa, T.2    Hayashi, H.3    Dimitrova, R.4    Ivanov, I.5
  • 51
    • 15944376926 scopus 로고    scopus 로고
    • Evidence for non-enzymatic glycosylation of Escherichia coli chromosomal DNA
    • Mironova, R., Niwa, T., Handzhiyski, Y., Sredovska, A., Ivanov, I., Evidence for non-enzymatic glycosylation of Escherichia coli chromosomal DNA. Mol Microbiol 55 (2005), 1801–1811, 10.1111/j.1365-2958.2005.04504.x.
    • (2005) Mol Microbiol , vol.55 , pp. 1801-1811
    • Mironova, R.1    Niwa, T.2    Handzhiyski, Y.3    Sredovska, A.4    Ivanov, I.5
  • 52
    • 78650334309 scopus 로고    scopus 로고
    • Antiglycation effects of carnosine and other compounds on the long-term survival of Escherichia coli
    • Pepper, E.D., Farrell, M.J., Nord, G., Finkel, S.E., Antiglycation effects of carnosine and other compounds on the long-term survival of Escherichia coli. Appl Environ Microbiol 76 (2010), 7925–7930, 10.1128/AEM.01369-10.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 7925-7930
    • Pepper, E.D.1    Farrell, M.J.2    Nord, G.3    Finkel, S.E.4
  • 53
    • 84874571853 scopus 로고    scopus 로고
    • Improving ethanol tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP)
    • Chong, H., Huang, L., Yeow, J., Wang, I., Zhang, H., Song, H., et al. Improving ethanol tolerance of Escherichia coli by rewiring its global regulator cAMP receptor protein (CRP). PLoS One, 8, 2013, e57628, 10.1371/journal.pone.0057628.
    • (2013) PLoS One , vol.8 , pp. e57628
    • Chong, H.1    Huang, L.2    Yeow, J.3    Wang, I.4    Zhang, H.5    Song, H.6
  • 54
    • 84894691418 scopus 로고    scopus 로고
    • The nature of laboratory domestication changes in freshly isolated Escherichia coli strains
    • Eydallin, G., Ryall, B., Maharjan, R., Ferenci, T., The nature of laboratory domestication changes in freshly isolated Escherichia coli strains. Environ Microbiol 16 (2014), 813–828, 10.1111/1462-2920.12208.
    • (2014) Environ Microbiol , vol.16 , pp. 813-828
    • Eydallin, G.1    Ryall, B.2    Maharjan, R.3    Ferenci, T.4
  • 55
    • 84867236919 scopus 로고    scopus 로고
    • SspA up-regulates gene expression of the LEE pathogenicity island by decreasing H-NS levels in enterohemorrhagic Escherichia coli
    • Hansen, A.-M., Jin, D., SspA up-regulates gene expression of the LEE pathogenicity island by decreasing H-NS levels in enterohemorrhagic Escherichia coli. BMC Microbiol, 12, 2012, 231, 10.1186/1471-2180-12-231.
    • (2012) BMC Microbiol , vol.12 , pp. 231
    • Hansen, A.-M.1    Jin, D.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.