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Volumn 8, Issue 1, 2017, Pages

Density-dependent recycling promotes the long-term survival of bacterial populations during periods of starvation

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL SURVIVAL; BACTERIAL VIABILITY; CONTROLLED STUDY; ESCHERICHIA COLI; LONG TERM SURVIVAL; MATHEMATICAL MODEL; MICROBIAL POPULATION DYNAMICS; MUTATION RATE; NONHUMAN; POPULATION DENSITY DEPENDENCE; POPULATION GROWTH; SIMULATION; STARVATION; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MICROBIAL VIABILITY; PHYSIOLOGY; THEORETICAL MODEL;

EID: 85014850829     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.02336-16     Document Type: Article
Times cited : (36)

References (48)
  • 1
    • 0035931866 scopus 로고    scopus 로고
    • Life in extreme environments
    • Rothschild LJ, Mancinelli RL. 2001. Life in extreme environments. Nature 409:1092–1101. https://doi.org/10.1038/35059215.
    • (2001) Nature , vol.409 , pp. 1092-1101
    • Rothschild, L.J.1    Mancinelli, R.L.2
  • 2
    • 0027510647 scopus 로고
    • Microbial competition: Escherichia coli mutants that take over stationary phase cultures
    • Zambrano MM, Siegele DA, Almirón M, Tormo A, Kolter R. 1993. Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259:1757–1760. https://doi.org/10.1126/science.7681219.
    • (1993) Science , vol.259 , pp. 1757-1760
    • Zambrano, M.M.1    Siegele, D.A.2    Almirón, M.3    Tormo, A.4    Kolter, R.5
  • 3
    • 0033442083 scopus 로고    scopus 로고
    • Ecological strategies and fitness tradeoffs in Escherichia coli mutants adapted to prolonged starvation
    • Vasi FK, Lenski RE. 1999. Ecological strategies and fitness tradeoffs in Escherichia coli mutants adapted to prolonged starvation. J Genet 78: 43–49. https://doi.org/10.1007/BF02994702.
    • (1999) J Genet , vol.78 , pp. 43-49
    • Vasi, F.K.1    Lenski, R.E.2
  • 4
    • 31544474634 scopus 로고    scopus 로고
    • Long-term survival during stationary phase: Evolution and the GASP phenotype
    • Finkel SE. 2006. Long-term survival during stationary phase: evolution and the GASP phenotype. Nat Rev Microbiol 4:113–120. https://doi.org/10.1038/nrmicro1340.
    • (2006) Nat Rev Microbiol , vol.4 , pp. 113-120
    • Finkel, S.E.1
  • 5
    • 0028354540 scopus 로고
    • Insertion sequence-related genetic variation in resting Escherichia coli K-12
    • Naas T, Blot M, Fitch WM, Arber W. 1994. Insertion sequence-related genetic variation in resting Escherichia coli K-12. Genetics 136:721–730.
    • (1994) Genetics , vol.136 , pp. 721-730
    • Naas, T.1    Blot, M.2    Fitch, W.M.3    Arber, W.4
  • 6
    • 0032859398 scopus 로고    scopus 로고
    • Mutations enhancing amino acid catabolism confer a growth advantage in stationary phase
    • Zinser ER, Kolter R. 1999. Mutations enhancing amino acid catabolism confer a growth advantage in stationary phase. J Bacteriol 181: 5800–5807.
    • (1999) J Bacteriol , vol.181 , pp. 5800-5807
    • Zinser, E.R.1    Kolter, R.2
  • 7
    • 0033912882 scopus 로고    scopus 로고
    • Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12
    • Zinser ER, Kolter R. 2000. Prolonged stationary-phase incubation selects for lrp mutations in Escherichia coli K-12. J Bacteriol 182:4361–4365. https://doi.org/10.1128/JB.182.15.4361-4365.2000.
    • (2000) J Bacteriol , vol.182 , pp. 4361-4365
    • Zinser, E.R.1    Kolter, R.2
  • 8
    • 2942650309 scopus 로고    scopus 로고
    • Escherichia coli evolution during stationary phase
    • Zinser ER, Kolter R. 2004. Escherichia coli evolution during stationary phase. Res Microbiol 155:328–336. https://doi.org/10.1016/j.resmic.2004.01.014.
    • (2004) Res Microbiol , vol.155 , pp. 328-336
    • Zinser, E.R.1    Kolter, R.2
  • 9
    • 0041817649 scopus 로고    scopus 로고
    • Bacterial evolution through the selective loss of beneficial genes: Trade-offs in expression involving two loci
    • Zinser ER, Schneider D, Blot M, Kolter R. 2003. Bacterial evolution through the selective loss of beneficial genes: trade-offs in expression involving two loci. Genetics 164:1271–1277.
    • (2003) Genetics , vol.164 , pp. 1271-1277
    • Zinser, E.R.1    Schneider, D.2    Blot, M.3    Kolter, R.4
  • 10
    • 0008831538 scopus 로고
    • Principles of animal ecology
    • Philadelphia, PA
    • Allee WC. 1949, Principles of animal ecology. Saunders, Philadelphia, PA.
    • (1949) Saunders
    • Allee, W.C.1
  • 11
    • 0034770056 scopus 로고    scopus 로고
    • Quorum sensing in bacteria
    • Miller MB, Bassler BL. 2001. Quorum sensing in bacteria. Annu Rev Microbiol 55:165–199. https://doi.org/10.1146/annurev.micro.55.1.165.
    • (2001) Annu Rev Microbiol , vol.55 , pp. 165-199
    • Miller, M.B.1    Bassler, B.L.2
  • 12
    • 84929485992 scopus 로고    scopus 로고
    • Survival kinetics of starving bacteria is biphasic and density-dependent
    • Phaiboun A, Zhang Y, Park B, Kim M. 2015. Survival kinetics of starving bacteria is biphasic and density-dependent. PLoS Comput Biol 11: e1004198. https://doi.org/10.1371/journal.pcbi.1004198.
    • (2015) Plos Comput Biol , vol.11 , pp. 11
    • Phaiboun, A.1    Zhang, Y.2    Park, B.3    Kim, M.4
  • 13
    • 0033616769 scopus 로고    scopus 로고
    • Evolution of microbial diversity during prolonged starvation
    • Finkel SE, Kolter R. 1999. Evolution of microbial diversity during prolonged starvation. Proc Natl Acad Sci U S A 96:4023–4027. https://doi.org/10.1073/pnas.96.7.4023.
    • (1999) Proc Natl Acad Sci U S A , vol.96 , pp. 4023-4027
    • Finkel, S.E.1    Kolter, R.2
  • 14
    • 84942875673 scopus 로고    scopus 로고
    • Evolutionary consequence of a trade-off between growth and maintenance along with ribosomal damages
    • Ying BW, Honda T, Tsuru S, Seno S, Matsuda H, Kazuta Y, Yomo T. 2015. Evolutionary consequence of a trade-off between growth and maintenance along with ribosomal damages. PLoS One 10:e0135639. https://doi.org/10.1371/journal.pone.0135639.
    • (2015) Plos One , vol.10 , pp. 10
    • Ying, B.W.1    Honda, T.2    Tsuru, S.3    Seno, S.4    Matsuda, H.5    Kazuta, Y.6    Yomo, T.7
  • 15
    • 0001639179 scopus 로고
    • The growth of bacterial cultures
    • Monod J. 1949. The growth of bacterial cultures. Annu Rev Microbiol 3:371–394. https://doi.org/10.1146/annurev.mi.03.100149.002103.
    • (1949) Annu Rev Microbiol , vol.3 , pp. 371-394
    • Monod, J.1
  • 16
    • 0036406590 scopus 로고    scopus 로고
    • Bacteriocins: Evolution, ecology, and application
    • Riley MA, Wertz JE. 2002. Bacteriocins: evolution, ecology, and application. Annu Rev Microbiol 56:117–137. https://doi.org/10.1146/annurev.micro.56.012302.161024.
    • (2002) Annu Rev Microbiol , vol.56 , pp. 117-137
    • Riley, M.A.1    Wertz, J.E.2
  • 17
    • 23844471922 scopus 로고    scopus 로고
    • Contact-dependent inhibition of growth in Escherichia coli
    • Aoki SK, Pamma R, Hernday AD, Bickham JE, Braaten BA, Low DA. 2005. Contact-dependent inhibition of growth in Escherichia coli. Science 309:1245–1248. https://doi.org/10.1126/science.1115109.
    • (2005) Science , vol.309 , pp. 1245-1248
    • Aoki, S.K.1    Pamma, R.2    Hernday, A.D.3    Bickham, J.E.4    Braaten, B.A.5    Low, D.A.6
  • 18
    • 57549104704 scopus 로고    scopus 로고
    • Death and cannibalism in a seasonal environment facilitate bacterial coexistence
    • Rozen DE, Philippe N, Arjan de Visser J, Lenski RE, Schneider D. 2009. Death and cannibalism in a seasonal environment facilitate bacterial coexistence. Ecol Lett 12:34–44. https://doi.org/10.1111/j.1461-0248 .2008.01257.x.
    • (2009) Ecol Lett , vol.12 , pp. 34-44
    • Rozen, D.E.1    Philippe, N.2    Arjan De Visser, J.3    Lenski, R.E.4    Schneider, D.5
  • 19
    • 0042366189 scopus 로고    scopus 로고
    • Cannibalism by sporulating bacteria
    • González-Pastor JE, Hobbs EC, Losick R. 2003. Cannibalism by sporulating bacteria. Science 301: 510 –513. https://doi.org/10.1126/science.1086462.
    • (2003) Science
    • González-Pastor, J.E.1    Hobbs, E.C.2    Losick, R.3
  • 21
    • 50049132233 scopus 로고    scopus 로고
    • Self-destructive cooperation mediated by phenotypic noise
    • Ackermann M, Stecher B, Freed NE, Songhet P, Hardt WD, Doebeli M. 2008. Self-destructive cooperation mediated by phenotypic noise. Nature 454:987–990. https://doi.org/10.1038/nature07067.
    • (2008) Nature , vol.454 , pp. 987-990
    • Ackermann, M.1    Stecher, B.2    Freed, N.E.3    Songhet, P.4    Hardt, W.D.5    Doebeli, M.6
  • 23
    • 84870812146 scopus 로고    scopus 로고
    • Altruistic cell death and collective drug resistance
    • Carmona-Fontaine C, Xavier JB. 2012. Altruistic cell death and collective drug resistance. Mol Syst Biol 8:627. https://doi.org/10.1038/msb.2012.60.
    • (2012) Mol Syst Biol , vol.8 , pp. 627
    • Carmona-Fontaine, C.1    Xavier, J.B.2
  • 24
    • 0001026007 scopus 로고
    • Natural selection costs of reproduction and a refinement of Lacks principle
    • Williams GC. 1966. Natural selection costs of reproduction and a refinement of Lacks principle. Am Nat 100:687–690.
    • (1966) Am Nat , vol.100 , pp. 687-690
    • Williams, G.C.1
  • 25
    • 72749093333 scopus 로고    scopus 로고
    • Deterioration, death and the evolution of reproductive restraint in late life
    • McNamara JM, Houston AI, Barta Z, Scheuerlein A, Fromhage L. 2009. Deterioration, death and the evolution of reproductive restraint in late life. Proc Biol Sci 276: 4061–4066. https://doi.org/10.1098/rspb.2009.0959.
    • (2009) Proc Biol Sci , vol.276 , pp. 4061-4066
    • McNamara, J.M.1    Houston, A.I.2    Barta, Z.3    Scheuerlein, A.4    Fromhage, L.5
  • 26
    • 0014413249 scopus 로고
    • Tragedy of commons
    • Hardin G. 1968. Tragedy of commons. Science 162:1243–1248. https://doi.org/10.1126/science.162.3859.1243.
    • (1968) Science , vol.162 , pp. 1243-1248
    • Hardin, G.1
  • 27
    • 36549046955 scopus 로고    scopus 로고
    • The tragedy of the commons in evolutionary biology
    • Rankin DJ, Bargum K, Kokko H. 2007. The tragedy of the commons in evolutionary biology. Trends Ecol Evol 22:643–651. https://doi.org/10.1016/j.tree.2007.07.009.
    • (2007) Trends Ecol Evol , vol.22 , pp. 643-651
    • Rankin, D.J.1    Bargum, K.2    Kokko, H.3
  • 28
    • 84880095653 scopus 로고    scopus 로고
    • Disentangling direct and indirect fitness effects of microbial dormancy
    • Ratcliff WC, Hoverman M, Travisano M, Denison RF. 2013. Disentangling direct and indirect fitness effects of microbial dormancy. Am Nat 182: 147–156. https://doi.org/10.1086/670943.
    • (2013) Am Nat , vol.182 , pp. 147-156
    • Ratcliff, W.C.1    Hoverman, M.2    Travisano, M.3    Denison, R.F.4
  • 29
    • 84886003327 scopus 로고    scopus 로고
    • Spatial structure facilitates cooperation in a social dilemma: Empirical evidence from a bacterial community
    • Hol FJH, Galajda P, Nagy K, Woolthuis RG, Dekker C, Keymer JE. 2013. Spatial structure facilitates cooperation in a social dilemma: empirical evidence from a bacterial community. PLoS One 8:e77042. https://doi.org/10.1371/journal.pone.0077042.
    • (2013) Plos One , vol.8 , pp. 8
    • Hol, F.1    Galajda, P.2    Nagy, K.3    Woolthuis, R.G.4    Dekker, C.5    Keymer, J.E.6
  • 30
    • 0032555228 scopus 로고    scopus 로고
    • The evolution of interspecific mutualisms
    • Doebeli M, Knowlton N. 1998. The evolution of interspecific mutualisms. Proc Natl Acad Sci USA 95:8676–8680. https://doi.org/10.1073/pnas.95.15.8676.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 8676-8680
    • Doebeli, M.1    Knowlton, N.2
  • 31
    • 33745310267 scopus 로고    scopus 로고
    • Resource competition and social conflict in experimental populations of yeast
    • MacLean RC, Gudelj I. 2006. Resource competition and social conflict in experimental populations of yeast. Nature 441:498–501. https://doi.org/10.1038/nature04624.
    • (2006) Nature , vol.441 , pp. 498-501
    • Maclean, R.C.1    Gudelj, I.2
  • 32
    • 58149392486 scopus 로고    scopus 로고
    • Simpson’s paradox in a synthetic microbial system
    • Chuang JS, Rivoire O, Leibler S. 2009. Simpson’s paradox in a synthetic microbial system. Science 323:272–275. https://doi.org/10.1126/science.1166739.
    • (2009) Science , vol.323 , pp. 272-275
    • Chuang, J.S.1    Rivoire, O.2    Leibler, S.3
  • 33
    • 0026613691 scopus 로고
    • Evolutionary games and spatial chaos
    • Nowak MA, May RM. 1992. Evolutionary games and spatial chaos. Nature 359:826–829. https://doi.org/10.1038/359826a0.
    • (1992) Nature , vol.359 , pp. 826-829
    • Nowak, M.A.1    May, R.M.2
  • 34
    • 0015240366 scopus 로고
    • Protein degradation in Escherichia coli. II. Strain differences in degradation of protein and nucleic acid resulting from starvation
    • Nath K, Koch AL. 1971. Protein degradation in Escherichia coli. II. Strain differences in degradation of protein and nucleic acid resulting from starvation. J Biol Chem 246:6956–6967.
    • (1971) J Biol Chem , vol.246 , pp. 6956-6967
    • Nath, K.1    Koch, A.L.2
  • 35
    • 0014939623 scopus 로고
    • Protein degradation in Escherichia coli. I. Measurement of rapidly and slowly decaying components
    • Nath K, Koch AL. 1970. Protein degradation in Escherichia coli. I. Measurement of rapidly and slowly decaying components. J Biol Chem 245:2889–2900.
    • (1970) J Biol Chem , vol.245 , pp. 2889-2900
    • Nath, K.1    Koch, A.L.2
  • 36
    • 0015163742 scopus 로고
    • The adaptive responses of Escherichia coli to a feast and famine existence
    • Koch AL. 1971. The adaptive responses of Escherichia coli to a feast and famine existence. Adv Microb Physiol 6:147–217. https://doi.org/10.1016/S0065-2911(08)60069-7.
    • (1971) Adv Microb Physiol , vol.6 , pp. 147-217
    • Koch, A.L.1
  • 37
    • 0014259862 scopus 로고
    • Metabolic events occurring during recovery from prolonged glucose starvation in Escherichia coli
    • Jacobson A, Gillespie D. 1968. Metabolic events occurring during recovery from prolonged glucose starvation in Escherichia coli. J Bacteriol 95:1030–1039.
    • (1968) J Bacteriol , vol.95 , pp. 1030-1039
    • Jacobson, A.1    Gillespie, D.2
  • 38
    • 0029815049 scopus 로고    scopus 로고
    • What size should a bacterium be? A question of scale
    • Koch AL. 1996. What size should a bacterium be? A question of scale. Annu Rev Microbiol 50:317–348. https://doi.org/10.1146/annurev.micro.50.1.317.
    • (1996) Annu Rev Microbiol , vol.50 , pp. 317-348
    • Koch, A.L.1
  • 39
    • 0028030535 scopus 로고
    • Sensing starvation: A homoserine lactone-dependent signaling pathway in Escherichia coli
    • Huisman GW, Kolter R. 1994. Sensing starvation: a homoserine lactone-dependent signaling pathway in Escherichia coli. Science 265:537–539. https://doi.org/10.1126/science.7545940.
    • (1994) Science , vol.265 , pp. 537-539
    • Huisman, G.W.1    Kolter, R.2
  • 40
    • 0030602818 scopus 로고    scopus 로고
    • GASPing for life in stationary phase
    • Zambrano MM, Kolter R. 1996. GASPing for life in stationary phase. Cell 86:181–184. https://doi.org/10.1016/S0092-8674(00)80089-6.
    • (1996) Cell , vol.86 , pp. 181-184
    • Zambrano, M.M.1    Kolter, R.2
  • 41
    • 0026020230 scopus 로고
    • Identification of a central regulator of stationary-phase gene expression in Escherichia coli
    • Lange R, Hengge-Aronis R. 1991. Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol Microbiol 5:49–59. https://doi.org/10.1111/j.1365-2958.1991.tb01825.x.
    • (1991) Mol Microbiol , vol.5 , pp. 49-59
    • Lange, R.1    Hengge-Aronis, R.2
  • 42
    • 0025785253 scopus 로고
    • The putative sigma factor KatF has a central role in development of starvation-mediated general resistance in Escherichia coli
    • McCann MP, Kidwell JP, Matin A. 1991. The putative sigma factor KatF has a central role in development of starvation-mediated general resistance in Escherichia coli. J Bacteriol 173:4188–4194. https://doi.org/10.1128/jb.173.13.4188-4194.1991.
    • (1991) J Bacteriol , vol.173 , pp. 4188-4194
    • McCann, M.P.1    Kidwell, J.P.2    Matin, A.3
  • 44
    • 84893491805 scopus 로고    scopus 로고
    • Gene expression scaled by distance to the genome replication site
    • Ying BW, Tsuru S, Seno S, Matsuda H, Yomo T. 2014. Gene expression scaled by distance to the genome replication site. Mol Biosyst 10: 375–379. https://doi.org/10.1039/c3mb70254e.
    • (2014) Mol Biosyst , vol.10 , pp. 375-379
    • Ying, B.W.1    Tsuru, S.2    Seno, S.3    Matsuda, H.4    Yomo, T.5
  • 46
    • 8744230577 scopus 로고    scopus 로고
    • MATCONT: A MATLAB package for numerical bifurcation analysis of ODEs
    • Dhooge A, Govaerts W, Kuznetsov YA. 2003. MATCONT: a MATLAB package for numerical bifurcation analysis of ODEs. ACM Trans Math Softw 29:141–164. https://doi.org/10.1145/779359.779362.
    • (2003) ACM Trans Math Softw , vol.29 , pp. 141-164
    • Dhooge, A.1    Govaerts, W.2    Kuznetsov, Y.A.3
  • 47
    • 0001641514 scopus 로고
    • Mutations of bacteria from virus sensitivity to virus resistance
    • Luria SE, Delbrück M. 1943. Mutations of bacteria from virus sensitivity to virus resistance. Genetics 28:491–511.
    • (1943) Genetics , vol.28 , pp. 491-511
    • Luria, S.E.1    Delbrück, M.2
  • 48
    • 84930161265 scopus 로고    scopus 로고
    • Nutrient-dependent growth defects and mutability of mutators in Escherichia coli
    • Ishizawa Y, Ying BW, Tsuru S, Yomo T. 2015. Nutrient-dependent growth defects and mutability of mutators in Escherichia coli. Genes Cells 20:68–76. https://doi.org/10.1111/gtc.12199.
    • (2015) Genes Cells , vol.20 , pp. 68-76
    • Ishizawa, Y.1    Ying, B.W.2    Tsuru, S.3    Yomo, T.4


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