Improving saliva shotgun metagenomics by chemical host DNA depletion

Microbiome

Volumn 6, Issue 1, 2018, Pages

  Marotz, Clarisse A ^a   Sanders, Jon G ^a   Zuniga, Cristal ^a   Zaramela, Livia S ^a   Knight, Rob ^a,b,c   Zengler, Karsten ^a,b  

^a UNIVERSITY OF CALIFORNIA   (United States)

^b UNIVERSITY OF CALIFORNIA SAN DIEGO   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

Host depletion; Microbial enrichment; Microbiome; Propidium monoazide; Saliva; Shotgun sequencing

Indexed keywords

RNA 16S; AZIDE; DNA; PROPIDIUM IODIDE; PROPIDIUM MONOAZIDE;

ARTICLE; COMPARATIVE STUDY; CRYOPRESERVATION; DNA SEQUENCE; FLOW CYTOMETRY; GUNSHOT INJURY; HUMAN; METAGENOMICS; MICROBIAL COMMUNITY; MITOCHONDRIAL DNA DEPLETION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; ULTRASOUND; ANALOGS AND DERIVATIVES; BACTERIUM; CHEMISTRY; FUNGUS; GENETICS; HIGH THROUGHPUT SEQUENCING; MICROBIOLOGY; MICROFLORA; PROCEDURES; SALIVA; VIRUS;

AZIDES; BACTERIA; DNA; FUNGI; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; METAGENOMICS; MICROBIOTA; PROPIDIUM; SALIVA; SEQUENCE ANALYSIS, DNA; VIRUSES;

EID: 85042857087     PISSN: None     EISSN: 20492618     Source Type: Journal    
DOI: 10.1186/s40168-018-0426-3     Document Type: Article

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