메뉴 건너뛰기




Volumn 17, Issue 1, 2018, Pages

Coupling the recombineering to Cre-lox system enables simplified large-scale genome deletion in Lactobacillus casei

Author keywords

Cre lox system; Lactobacillus casei; Large scale genome deletion, genome engineering; Recombineering

Indexed keywords

CRE RECOMBINASE; INTEGRASE; RECOMBINASE;

EID: 85041805967     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/s12934-018-0872-4     Document Type: Article
Times cited : (23)

References (46)
  • 1
    • 1042290278 scopus 로고    scopus 로고
    • Lactic acid bacteria as functional starter cultures for the food fermentation industry
    • Leroy F, De Vuyst L. Lactic acid bacteria as functional starter cultures for the food fermentation industry. Trends Food Sci Technol. 2004;15:67-78.
    • (2004) Trends Food Sci Technol , vol.15 , pp. 67-78
    • Leroy, F.1    Vuyst, L.2
  • 2
    • 84903937470 scopus 로고    scopus 로고
    • Impact of genomics on the field of probiotic research: historical perspectives to modern paradigms
    • Johnson BR, Klaenhammer TR. Impact of genomics on the field of probiotic research: historical perspectives to modern paradigms. Antonie Van Leeuwenhoek. 2014;106:141-56.
    • (2014) Antonie Van Leeuwenhoek , vol.106 , pp. 141-156
    • Johnson, B.R.1    Klaenhammer, T.R.2
  • 3
    • 84906841405 scopus 로고    scopus 로고
    • Functional genomics of lactic acid bacteria: from food to health
    • Douillard FP, de Vos WM. Functional genomics of lactic acid bacteria: from food to health. Microb Cell Fact. 2014;13(Suppl 1):S8.
    • (2014) Microb Cell Fact , vol.13
    • Douillard, F.P.1    Vos, W.M.2
  • 6
    • 85010188975 scopus 로고    scopus 로고
    • Enhanced heterologous protein productivity by genome reduction in Lactococcus lactis NZ9000
    • Zhu D, Fu Y, Liu F, Xu H, Saris PE, Qiao M. Enhanced heterologous protein productivity by genome reduction in Lactococcus lactis NZ9000. Microb Cell Fact. 2017;16:1.
    • (2017) Microb Cell Fact , vol.16 , pp. 1
    • Zhu, D.1    Fu, Y.2    Liu, F.3    Xu, H.4    Saris, P.E.5    Qiao, M.6
  • 7
    • 84992110956 scopus 로고    scopus 로고
    • Structural studies of the rhamnose-rich cell wall polysaccharide of Lactobacillus casei BL23
    • Vinogradov E, Sadovskaya I, Grard T, Chapot-Chartier MP. Structural studies of the rhamnose-rich cell wall polysaccharide of Lactobacillus casei BL23. Carbohydr Res. 2016;435:156-61.
    • (2016) Carbohydr Res , vol.435 , pp. 156-161
    • Vinogradov, E.1    Sadovskaya, I.2    Grard, T.3    Chapot-Chartier, M.P.4
  • 9
    • 85017537569 scopus 로고    scopus 로고
    • Lactobacilli and pediococci as versatile cell factories-evaluation of strain properties and genetic tools
    • Bosma EF, Forster J, Nielsen AT. Lactobacilli and pediococci as versatile cell factories-evaluation of strain properties and genetic tools. Biotechnol Adv. 2017;35:419-42.
    • (2017) Biotechnol Adv , vol.35 , pp. 419-442
    • Bosma, E.F.1    Forster, J.2    Nielsen, A.T.3
  • 10
    • 76849106775 scopus 로고    scopus 로고
    • Sorbitol production from lactose by engineered Lactobacillus casei deficient in sorbitol transport system and mannitol-1-phosphate dehydrogenase
    • De Boeck R, Sarmiento-Rubiano LA, Nadal I, Monedero V, Perez-Martinez G, Yebra MJ. Sorbitol production from lactose by engineered Lactobacillus casei deficient in sorbitol transport system and mannitol-1-phosphate dehydrogenase. Appl Microbiol Biotechnol. 2010;85:1915-22.
    • (2010) Appl Microbiol Biotechnol , vol.85 , pp. 1915-1922
    • Boeck, R.1    Sarmiento-Rubiano, L.A.2    Nadal, I.3    Monedero, V.4    Perez-Martinez, G.5    Yebra, M.J.6
  • 11
    • 84981203577 scopus 로고    scopus 로고
    • Fermentation of de-oiled algal biomass by Lactobacillus casei for production of lactic acid
    • Overbeck T, Steele JL, Broadbent JR. Fermentation of de-oiled algal biomass by Lactobacillus casei for production of lactic acid. Bioprocess Biosyst Eng. 2016;39:1817-23.
    • (2016) Bioprocess Biosyst Eng , vol.39 , pp. 1817-1823
    • Overbeck, T.1    Steele, J.L.2    Broadbent, J.R.3
  • 13
    • 49449101678 scopus 로고    scopus 로고
    • Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria
    • Liu M, Nauta A, Francke C, Siezen RJ. Comparative genomics of enzymes in flavor-forming pathways from amino acids in lactic acid bacteria. Appl Environ Microbiol. 2008;74:4590-600.
    • (2008) Appl Environ Microbiol , vol.74 , pp. 4590-4600
    • Liu, M.1    Nauta, A.2    Francke, C.3    Siezen, R.J.4
  • 15
    • 85041808406 scopus 로고    scopus 로고
    • Identification and functional analysis of potential prophage-derived recombinases for genome editing in Lactobacillus casei
    • Xin Y, Guo T, Mu Y, Kong J. Identification and functional analysis of potential prophage-derived recombinases for genome editing in Lactobacillus casei. FEMS Microbiol Lett. 2017;364:fnx243.
    • (2017) FEMS Microbiol Lett , vol.364
    • Xin, Y.1    Guo, T.2    Mu, Y.3    Kong, J.4
  • 16
    • 84900819084 scopus 로고    scopus 로고
    • Construction of upp deletion mutant strains of Lactobacillus casei and Lactococcus lactis based on counterselective system using temperature-sensitive plasmid
    • Song L, Cui H, Tang L, Qiao X, Liu M, Jiang Y, Cui W, Li Y. Construction of upp deletion mutant strains of Lactobacillus casei and Lactococcus lactis based on counterselective system using temperature-sensitive plasmid. J Microbiol Methods. 2014;102:37-44.
    • (2014) J Microbiol Methods , vol.102 , pp. 37-44
    • Song, L.1    Cui, H.2    Tang, L.3    Qiao, X.4    Liu, M.5    Jiang, Y.6    Cui, W.7    Li, Y.8
  • 17
    • 0026801262 scopus 로고
    • New thermosensitive plasmid for gram-positive bacteria
    • Maguin E, Duwat P, Hege T, Ehrlich D, Gruss A. New thermosensitive plasmid for gram-positive bacteria. J Bacteriol. 1992;174:5633-8.
    • (1992) J Bacteriol , vol.174 , pp. 5633-5638
    • Maguin, E.1    Duwat, P.2    Hege, T.3    Ehrlich, D.4    Gruss, A.5
  • 18
    • 77950591971 scopus 로고    scopus 로고
    • Cre-lox-based method for generation of large deletions within the genomic magnetosome island of Magnetospirillum gryphiswaldense
    • Ullrich S, Schuler D. Cre-lox-based method for generation of large deletions within the genomic magnetosome island of Magnetospirillum gryphiswaldense. Appl Environ Microbiol. 2010;76:2439-44.
    • (2010) Appl Environ Microbiol , vol.76 , pp. 2439-2444
    • Ullrich, S.1    Schuler, D.2
  • 22
    • 49249139249 scopus 로고    scopus 로고
    • Rapid and efficient construction of markerless deletions in the Escherichia coli genome
    • Yu BJ, Kang KH, Lee JH, Sung BH, Kim MS, Kim SC. Rapid and efficient construction of markerless deletions in the Escherichia coli genome. Nucleic Acids Res. 2008;36:e84.
    • (2008) Nucleic Acids Res , vol.36
    • Yu, B.J.1    Kang, K.H.2    Lee, J.H.3    Sung, B.H.4    Kim, M.S.5    Kim, S.C.6
  • 23
    • 0019888362 scopus 로고
    • Bacteriophage P1 site-specific recombination. I. Recombination between loxP sites
    • Sternberg N, Hamilton D. Bacteriophage P1 site-specific recombination. I. Recombination between loxP sites. J Mol Biol. 1981;150:467-86.
    • (1981) J Mol Biol , vol.150 , pp. 467-486
    • Sternberg, N.1    Hamilton, D.2
  • 24
    • 0030809406 scopus 로고    scopus 로고
    • Targeted integration of DNA using mutant lox sites in embryonic stem cells
    • Araki K, Araki M, Yamamura K. Targeted integration of DNA using mutant lox sites in embryonic stem cells. Nucleic Acids Res. 1997;25:868-72.
    • (1997) Nucleic Acids Res , vol.25 , pp. 868-872
    • Araki, K.1    Araki, M.2    Yamamura, K.3
  • 25
    • 0023046599 scopus 로고
    • The role of the loxP spacer region in P1 site-specific recombination
    • Hoess RH, Wierzbicki A, Abremski K. The role of the loxP spacer region in P1 site-specific recombination. Nucleic Acids Res. 1986;14:2287-300.
    • (1986) Nucleic Acids Res , vol.14 , pp. 2287-2300
    • Hoess, R.H.1    Wierzbicki, A.2    Abremski, K.3
  • 27
    • 79959363282 scopus 로고    scopus 로고
    • Complete genome sequence of the probiotic bacterium Lactobacillus casei LC2W
    • Chen C, Ai L, Zhou F, Wang L, Zhang H, Chen W, Guo B. Complete genome sequence of the probiotic bacterium Lactobacillus casei LC2W. J Bacteriol. 2011;193:3419-20.
    • (2011) J Bacteriol , vol.193 , pp. 3419-3420
    • Chen, C.1    Ai, L.2    Zhou, F.3    Wang, L.4    Zhang, H.5    Chen, W.6    Guo, B.7
  • 28
    • 0031944982 scopus 로고    scopus 로고
    • A nine-residue synthetic propeptide enhances secretion efficiency of heterologous proteins in Lactococcus lactis
    • Le Loir Y, Gruss A, Ehrlich SD, Langella P. A nine-residue synthetic propeptide enhances secretion efficiency of heterologous proteins in Lactococcus lactis. J Bacteriol. 1998;180:1895-903.
    • (1998) J Bacteriol , vol.180 , pp. 1895-1903
    • Loir, Y.1    Gruss, A.2    Ehrlich, S.D.3    Langella, P.4
  • 29
    • 0027855511 scopus 로고
    • High- and low-copy-number Lactococcus shuttle cloning vectors with features for clone screening
    • O'Sullivan DJ, Klaenhammer TR. High- and low-copy-number Lactococcus shuttle cloning vectors with features for clone screening. Gene. 1993;137:227-31.
    • (1993) Gene , vol.137 , pp. 227-231
    • O'Sullivan, D.J.1    Klaenhammer, T.R.2
  • 32
    • 0037399388 scopus 로고    scopus 로고
    • Chromosomal deletion formation system based on Tn5 double transposition: use for making minimal genomes and essential gene analysis
    • Goryshin IY, Naumann TA, Apodaca J, Reznikoff WS. Chromosomal deletion formation system based on Tn5 double transposition: use for making minimal genomes and essential gene analysis. Genome Res. 2003;13:644-53.
    • (2003) Genome Res , vol.13 , pp. 644-653
    • Goryshin, I.Y.1    Naumann, T.A.2    Apodaca, J.3    Reznikoff, W.S.4
  • 34
    • 29144482539 scopus 로고    scopus 로고
    • Environmentally controlled invasion of cancer cells by engineered bacteria
    • Anderson JC, Clarke EJ, Arkin AP, Voigt CA. Environmentally controlled invasion of cancer cells by engineered bacteria. J Mol Biol. 2006;355:619-27.
    • (2006) J Mol Biol , vol.355 , pp. 619-627
    • Anderson, J.C.1    Clarke, E.J.2    Arkin, A.P.3    Voigt, C.A.4
  • 35
    • 84937886246 scopus 로고    scopus 로고
    • CRISPR-based screening of genomic island excision events in bacteria
    • Selle K, Klaenhammer TR, Barrangou R. CRISPR-based screening of genomic island excision events in bacteria. Proc Natl Acad Sci USA. 2015;112:8076-81.
    • (2015) Proc Natl Acad Sci USA , vol.112 , pp. 8076-8081
    • Selle, K.1    Klaenhammer, T.R.2    Barrangou, R.3
  • 37
    • 84988600663 scopus 로고    scopus 로고
    • A counterselection method for Lactococcus lactis genome editing based on class IIa bacteriocin sensitivity
    • Wan X, Usvalampi AM, Saris PE, Takala TM. A counterselection method for Lactococcus lactis genome editing based on class IIa bacteriocin sensitivity. Appl Microbiol Biotechnol. 2016;100:9661-9.
    • (2016) Appl Microbiol Biotechnol , vol.100 , pp. 9661-9669
    • Wan, X.1    Usvalampi, A.M.2    Saris, P.E.3    Takala, T.M.4
  • 38
    • 0037309145 scopus 로고    scopus 로고
    • Characterization, expression, and mutation of the Lactococcus lactis galPMKTE genes, involved in galactose utilization via the Leloir pathway
    • Grossiord BP, Luesink EJ, Vaughan EE, Arnaud A, de Vos WM. Characterization, expression, and mutation of the Lactococcus lactis galPMKTE genes, involved in galactose utilization via the Leloir pathway. J Bacteriol. 2003;185:870-8.
    • (2003) J Bacteriol , vol.185 , pp. 870-878
    • Grossiord, B.P.1    Luesink, E.J.2    Vaughan, E.E.3    Arnaud, A.4    Vos, W.M.5
  • 39
    • 84992035708 scopus 로고    scopus 로고
    • The potential of species-specific tagatose-6-phosphate (T6P) pathway in Lactobacillus casei group for galactose reduction in fermented dairy foods
    • Wu Q, Shah NP. The potential of species-specific tagatose-6-phosphate (T6P) pathway in Lactobacillus casei group for galactose reduction in fermented dairy foods. Food Microbiol. 2017;62:178-87.
    • (2017) Food Microbiol , vol.62 , pp. 178-187
    • Wu, Q.1    Shah, N.P.2
  • 40
    • 85032683575 scopus 로고    scopus 로고
    • CRISPR-Cas9D10A nickase-assisted genome editing in Lactobacillus casei
    • Song X, Huang H, Xiong Z, Ai L, Yang S. CRISPR-Cas9D10A nickase-assisted genome editing in Lactobacillus casei. Appl Environ Microbiol. 2017;83:e01259-17.
    • (2017) Appl Environ Microbiol , vol.83 , pp. e01259-e01317
    • Song, X.1    Huang, H.2    Xiong, Z.3    Ai, L.4    Yang, S.5
  • 41
    • 84938993551 scopus 로고    scopus 로고
    • Construction of thyA deficient Lactococcus lactis using the Cre-loxP recombination system
    • Zhu D, Zhao K, Xu H, Zhang X, Bai Y, Saris PEJ, Qiao M. Construction of thyA deficient Lactococcus lactis using the Cre-loxP recombination system. Ann Microbiol. 2014;65:1659-65.
    • (2014) Ann Microbiol , vol.65 , pp. 1659-1665
    • Zhu, D.1    Zhao, K.2    Xu, H.3    Zhang, X.4    Bai, Y.5    Saris, P.E.J.6    Qiao, M.7
  • 42
    • 2342505688 scopus 로고    scopus 로고
    • An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and λ Red
    • Fukiya S, Mizoguchi H, Mori H. An improved method for deleting large regions of Escherichia coli K-12 chromosome using a combination of Cre/loxP and λ Red. FEMS Microbiol Lett. 2004;234:325-31.
    • (2004) FEMS Microbiol Lett , vol.234 , pp. 325-331
    • Fukiya, S.1    Mizoguchi, H.2    Mori, H.3
  • 43
    • 0029278832 scopus 로고
    • Site-specific integration of DNA into wild-type and mutant lox sites placed in the plant genome
    • Albert H, Dale EC, Lee E, Ow DW. Site-specific integration of DNA into wild-type and mutant lox sites placed in the plant genome. Plant J. 1995;7:649-59.
    • (1995) Plant J , vol.7 , pp. 649-659
    • Albert, H.1    Dale, E.C.2    Lee, E.3    Ow, D.W.4
  • 45
    • 77954815935 scopus 로고    scopus 로고
    • Characterization of a cryptic plasmid pD403 from Lactobacillus plantarum and construction of shuttle vectors based on its replicon
    • Sun Z, Kong J, Kong W. Characterization of a cryptic plasmid pD403 from Lactobacillus plantarum and construction of shuttle vectors based on its replicon. Mol Biotechnol. 2010;45:24-33.
    • (2010) Mol Biotechnol , vol.45 , pp. 24-33
    • Sun, Z.1    Kong, J.2    Kong, W.3
  • 46
    • 85021734848 scopus 로고    scopus 로고
    • Development of a counterselectable seamless mutagenesis system in lactic acid bacteria
    • Xin Y, Guo T, Mu Y, Kong J. Development of a counterselectable seamless mutagenesis system in lactic acid bacteria. Microb Cell Fact. 2017;16:116.
    • (2017) Microb Cell Fact , vol.16 , pp. 116
    • Xin, Y.1    Guo, T.2    Mu, Y.3    Kong, J.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.