-
1
-
-
13944274479
-
Methicillin-resistant Staphylococcus aureus: An evolutionary, epidemiologic, and therapeutic odyssey
-
Deresinski, S. Methicillin-resistant Staphylococcus aureus: an evolutionary, epidemiologic, and therapeutic odyssey. Clin. Infect. Dis. 40, 562-573 (2005).
-
(2005)
Clin. Infect. Dis.
, vol.40
, pp. 562-573
-
-
Deresinski, S.1
-
2
-
-
84995495215
-
Prevention and Control of Methicillin-Resistant Staphylococcus aureus in Acute Care Settings
-
Lee, A. S., Huttner, B. & Harbarth, S. Prevention and Control of Methicillin-Resistant Staphylococcus aureus in Acute Care Settings. Infect. Dis. Clin. North Am. 30, 931-952 (2016).
-
(2016)
Infect. Dis. Clin. North Am.
, vol.30
, pp. 931-952
-
-
Lee, A.S.1
Huttner, B.2
Harbarth, S.3
-
3
-
-
84995557936
-
Staphylococcus aureus in Animals and Food: Methicillin Resistance, Prevalence and Population Structure. A Review in the African Continent
-
Lozano, C., Gharsa, H., Ben Slama, K., Zarazaga, M. & Torres, C. Staphylococcus aureus in Animals and Food: Methicillin Resistance, Prevalence and Population Structure. A Review in the African Continent. Microorganisms 4, 12 (2016).
-
(2016)
Microorganisms
, vol.4
, pp. 12
-
-
Lozano, C.1
Gharsa, H.2
Ben Slama, K.3
Zarazaga, M.4
Torres, C.5
-
4
-
-
84985031437
-
Intrahost Evolution of Methicillin-Resistant Staphylococcus aureus USA300 among Individuals with Reoccurring Skin and Soft-Tissue Infections
-
Azarian, T. et al. Intrahost Evolution of Methicillin-Resistant Staphylococcus aureus USA300 Among Individuals With Reoccurring Skin and Soft-Tissue Infections. J. Infect. Dis. 214, 895-905 (2016).
-
(2016)
J. Infect. Dis.
, vol.214
, pp. 895-905
-
-
Azarian, T.1
-
5
-
-
85017497629
-
The recent emergence in hospitals of multidrug-resistant community-associated sequence type 1 and spa type t127 methicillin-resistant Staphylococcus aureus investigated by whole-genome sequencing: Implications for screening
-
Earls, M. R. et al. The recent emergence in hospitals of multidrug-resistant community-associated sequence type 1 and spa type t127 methicillin-resistant Staphylococcus aureus investigated by whole-genome sequencing: Implications for screening. PLoS One 12, e0175542 (2017).
-
(2017)
PLoS One
, vol.12
, pp. e0175542
-
-
Earls, M.R.1
-
6
-
-
38049166611
-
Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus
-
Highlander, S. K. et al. Subtle genetic changes enhance virulence of methicillin resistant and sensitive Staphylococcus aureus. BMC Microbiol. 7, 99 (2007).
-
(2007)
BMC Microbiol.
, vol.7
, pp. 99
-
-
Highlander, S.K.1
-
7
-
-
84991490336
-
Comparative virulence studies and transcriptome analysis of Staphylococcus aureus strains isolated from animals
-
Iqbal, Z. et al. Comparative virulence studies and transcriptome analysis of Staphylococcus aureus strains isolated from animals. Sci. Rep. 6, 35442 (2016).
-
(2016)
Sci. Rep.
, vol.6
, pp. 35442
-
-
Iqbal, Z.1
-
8
-
-
85010468578
-
Complete-genome sequencing elucidates outbreak dynamics of CA-MRSA USA300 (ST8-spat008) in an academic hospital of Paramaribo, Republic of Suriname
-
Sabat, A. J. et al. Complete-genome sequencing elucidates outbreak dynamics of CA-MRSA USA300 (ST8-spat008) in an academic hospital of Paramaribo, Republic of Suriname. Sci. Rep. 7, 41050 (2017).
-
(2017)
Sci. Rep.
, vol.7
, pp. 41050
-
-
Sabat, A.J.1
-
9
-
-
39149095251
-
The SarA protein family of Staphylococcus aureus
-
Cheung, A. L., Nishina, K. A., Trotonda, M. P. & Tamber, S. The SarA protein family of Staphylococcus aureus. Int. J. Biochem. Cell. Biol. 40, 355-361 (2008).
-
(2008)
Int. J. Biochem. Cell. Biol.
, vol.40
, pp. 355-361
-
-
Cheung, A.L.1
Nishina, K.A.2
Trotonda, M.P.3
Tamber, S.4
-
10
-
-
84936769916
-
The nSAa Specific lipoprotein like cluster (lpl) of S.aureus USA300 contributes to immune stimulation and invasion in human cells
-
Nguyen, M. T. et al. The nSAa Specific Lipoprotein Like Cluster (lpl) of S. aureus USA300 Contributes to Immune Stimulation and Invasion in Human Cells. PLoS Pathog. 11, e1004984 (2015).
-
(2015)
PLoS Pathog.
, vol.11
, pp. e1004984
-
-
Nguyen, M.T.1
-
11
-
-
52049123299
-
The bacterial superantigen and superantigen-like proteins
-
Fraser, J. D. & Proft, T. The bacterial superantigen and superantigen-like proteins. Immunol. Rev. 225, 226-243 (2008).
-
(2008)
Immunol. Rev.
, vol.225
, pp. 226-243
-
-
Fraser, J.D.1
Proft, T.2
-
12
-
-
77954586271
-
Community-associated methicillin-resistant Staphylococcus aureus: Epidemiology and clinical consequences of an emerging epidemic
-
David, M. Z. & Daum, R. S. Community-associated methicillin-resistant Staphylococcus aureus: epidemiology and clinical consequences of an emerging epidemic. Clin. Microbiol. Rev. 23, 616-687 (2010).
-
(2010)
Clin. Microbiol. Rev.
, vol.23
, pp. 616-687
-
-
David, M.Z.1
Daum, R.S.2
-
13
-
-
44149098644
-
Pathogenesis of methicillin-resistant Staphylococcus aureus infection
-
Gordon, R. J. & Lowy, F. D. Pathogenesis of methicillin-resistant Staphylococcus aureus infection. Clin. Infect. Dis. 46(Suppl 5), S350-359 (2008).
-
(2008)
Clin. Infect. Dis.
, vol.46
, pp. S350-359
-
-
Gordon, R.J.1
Lowy, F.D.2
-
14
-
-
78649918595
-
Importance of the global regulators Agr and SaeRS in the pathogenesis of CAMRSA USA300 infection
-
Montgomery, C. P., Boyle-Vavra, S. & Daum, R. S. Importance of the global regulators Agr and SaeRS in the pathogenesis of CAMRSA USA300 infection. PLoS One 5, e15177 (2010).
-
(2010)
PLoS One
, vol.5
, pp. e15177
-
-
Montgomery, C.P.1
Boyle-Vavra, S.2
Daum, R.S.3
-
15
-
-
85041585303
-
The transcriptional regulator CpsY is important for innate immune evasion in Streptococcus pyogenes
-
Vega, L. A. et al. The transcriptional regulator CpsY is important for innate immune evasion in Streptococcus pyogenes. Infect. Immun. (2016).
-
(2016)
Infect. Immun.
-
-
Vega, L.A.1
-
16
-
-
0037898952
-
Autoinduction and signal transduction in the regulation of staphylococcal virulence
-
Novick, R. P. Autoinduction and signal transduction in the regulation of staphylococcal virulence. Mol. Microbiol. 48, 1429-1449 (2003).
-
(2003)
Mol. Microbiol.
, vol.48
, pp. 1429-1449
-
-
Novick, R.P.1
-
17
-
-
84997282760
-
Small non-coding RNAs: New insights in modulation of host immune response by intracellular bacterial pathogens
-
Ahmed, W., Zheng, K. & Liu, Z. F. Small Non-Coding RNAs: New Insights in Modulation of Host Immune Response by Intracellular Bacterial Pathogens. Front. Immunol. 7, 431 (2016).
-
(2016)
Front. Immunol.
, vol.7
, pp. 431
-
-
Ahmed, W.1
Zheng, K.2
Liu, Z.F.3
-
18
-
-
0036207282
-
Untranslated regions of mRNAs
-
REVIEWS0004
-
Mignone, F., Gissi, C., Liuni, S. & Pesole, G. Untranslated regions of mRNAs. Genome Biol. 3, REVIEWS0004 (2002).
-
(2002)
Genome Biol.
, vol.3
-
-
Mignone, F.1
Gissi, C.2
Liuni, S.3
Pesole, G.4
-
19
-
-
84876907659
-
T box RNA decodes both the information content and geometry of tRNA to affect gene expression
-
Grigg, J. C. et al. T box RNA decodes both the information content and geometry of tRNA to affect gene expression. Proc. Natl. Acad. Sci. USA 110, 7240-7245 (2013).
-
(2013)
Proc. Natl. Acad. Sci. USA
, vol.110
, pp. 7240-7245
-
-
Grigg, J.C.1
-
20
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey, T. L. & Elkan, C. Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc. Int. Conf. Intell. Syst. Mol. Biol. 2, 28-36 (1994).
-
(1994)
Proc. Int. Conf. Intell. Syst. Mol. Biol.
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
21
-
-
34447506667
-
Quantifying similarity between motifs
-
Gupta, S., Stamatoyannopoulos, J. A., Bailey, T. L. & Noble, W. S. Quantifying similarity between motifs. Genome Biol. 8, R24 (2007).
-
(2007)
Genome Biol.
, vol.8
, pp. R24
-
-
Gupta, S.1
Stamatoyannopoulos, J.A.2
Bailey, T.L.3
Noble, W.S.4
-
22
-
-
84946094179
-
Rfam 12.0: Updates to the RNA families database
-
Nawrocki, E. P. et al. Rfam 12.0: updates to the RNA families database. Nucleic Acids Res. 43, D130-137 (2015).
-
(2015)
Nucleic Acids Res.
, vol.43
, pp. D130-137
-
-
Nawrocki, E.P.1
-
23
-
-
80051688000
-
Field guide to next-generation DNA sequencers
-
Glenn, T. C. Field guide to next-generation DNA sequencers. Mol. Ecol. Resour. 11, 759-769 (2011).
-
(2011)
Mol. Ecol. Resour.
, vol.11
, pp. 759-769
-
-
Glenn, T.C.1
-
24
-
-
84878234942
-
Characterizing and measuring bias in sequence data
-
Ross, M. G. et al. Characterizing and measuring bias in sequence data. Genome Biol. 14, R51 (2013).
-
(2013)
Genome Biol.
, vol.14
, pp. R51
-
-
Ross, M.G.1
-
25
-
-
84855464046
-
A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide
-
Sayed, N., Jousselin, A. & Felden, B. A cis-antisense RNA acts in trans in Staphylococcus aureus to control translation of a human cytolytic peptide. Nat. Struct. Mol. Biol. 19, 105-112 (2011).
-
(2011)
Nat. Struct. Mol. Biol.
, vol.19
, pp. 105-112
-
-
Sayed, N.1
Jousselin, A.2
Felden, B.3
-
26
-
-
0036854622
-
Staphylococcus aureus clumping factor B (ClfB) promotes adherence to human type I cytokeratin 10: Implications for nasal colonization
-
O'Brien, L. M., Walsh, E. J., Massey, R. C., Peacock, S. J. & Foster, T. J. Staphylococcus aureus clumping factor B (ClfB) promotes adherence to human type I cytokeratin 10: implications for nasal colonization. Cell. Microbiol. 4, 759-770 (2002).
-
(2002)
Cell. Microbiol.
, vol.4
, pp. 759-770
-
-
O'Brien, L.M.1
Walsh, E.J.2
Massey, R.C.3
Peacock, S.J.4
Foster, T.J.5
-
27
-
-
38849143079
-
Key role for clumping factor B in Staphylococcus aureus nasal colonization of humans
-
Wertheim, H. F. et al. Key role for clumping factor B in Staphylococcus aureus nasal colonization of humans. PLoS Med. 5, e17 (2008).
-
(2008)
PLoS Med.
, vol.5
, pp. e17
-
-
Wertheim, H.F.1
-
28
-
-
84858400338
-
Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions
-
Schmidtke, C. et al. Genome-wide transcriptome analysis of the plant pathogen Xanthomonas identifies sRNAs with putative virulence functions. Nucleic Acids Res. 40, 2020-2031 (2012).
-
(2012)
Nucleic Acids Res.
, vol.40
, pp. 2020-2031
-
-
Schmidtke, C.1
-
29
-
-
84973325742
-
The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2)
-
Jeong, Y. et al. The dynamic transcriptional and translational landscape of the model antibiotic producer Streptomyces coelicolor A3(2). Nat. Commun. 7, 11605 (2016).
-
(2016)
Nat. Commun.
, vol.7
, pp. 11605
-
-
Jeong, Y.1
-
30
-
-
84892843450
-
Identification of regulatory RNA in bacterial genomes by genome-scale mapping of transcription start sites
-
Singh, N. & Wade, J. T. Identification of regulatory RNA in bacterial genomes by genome-scale mapping of transcription start sites. Methods Mol. Biol. 1103, 1-10 (2014).
-
(2014)
Methods Mol. Biol.
, vol.1103
, pp. 1-10
-
-
Singh, N.1
Wade, J.T.2
-
31
-
-
84995801546
-
TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens
-
Prados, J., Linder, P. & Redder, P. TSS-EMOTE, a refined protocol for a more complete and less biased global mapping of transcription start sites in bacterial pathogens. BMC Genomics 17, 849 (2016).
-
(2016)
BMC Genomics
, vol.17
, pp. 849
-
-
Prados, J.1
Linder, P.2
Redder, P.3
-
32
-
-
84860742976
-
The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium
-
Kroger, C. et al. The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. Proc. Natl. Acad. Sci. USA 109, E1277-1286 (2012).
-
(2012)
Proc. Natl. Acad. Sci. USA
, vol.109
, pp. E1277-1286
-
-
Kroger, C.1
-
33
-
-
85032007236
-
Determination of the Genome and Primary Transcriptome of Syngas Fermenting Eubacterium limosum ATCC 8486
-
Song, Y. et al. Determination of the Genome and Primary Transcriptome of Syngas Fermenting Eubacterium limosum ATCC 8486. Sci. Rep. 7, 13694 (2017).
-
(2017)
Sci. Rep.
, vol.7
, pp. 13694
-
-
Song, Y.1
-
34
-
-
84866160409
-
Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling
-
Kim, D. et al. Comparative analysis of regulatory elements between Escherichia coli and Klebsiella pneumoniae by genome-wide transcription start site profiling. PLoS Genet. 8, e1002867 (2012).
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002867
-
-
Kim, D.1
-
35
-
-
85013489218
-
Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1
-
Cho, S. et al. Genome-wide primary transcriptome analysis of H2-producing archaeon Thermococcus onnurineus NA1. Sci. Rep. 7, 43044 (2017).
-
(2017)
Sci. Rep.
, vol.7
, pp. 43044
-
-
Cho, S.1
-
36
-
-
58149200939
-
DOOR: A database for prokaryotic operons
-
Mao, F., Dam, P., Chou, J., Olman, V. & Xu, Y. DOOR: a database for prokaryotic operons. Nucleic Acids Res. 37, D459-463 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. D459-463
-
-
Mao, F.1
Dam, P.2
Chou, J.3
Olman, V.4
Xu, Y.5
-
37
-
-
34247489752
-
An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin
-
Kawano, M., Aravind, L. & Storz, G. An antisense RNA controls synthesis of an SOS-induced toxin evolved from an antitoxin. Mol. Microbiol. 64, 738-754 (2007).
-
(2007)
Mol. Microbiol.
, vol.64
, pp. 738-754
-
-
Kawano, M.1
Aravind, L.2
Storz, G.3
-
38
-
-
84055200530
-
Genome-wide antisense transcription drives mRNA processing in bacteria
-
Lasa, I. et al. Genome-wide antisense transcription drives mRNA processing in bacteria. Proc. Natl. Acad. Sci. USA 108, 20172-20177 (2011).
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 20172-20177
-
-
Lasa, I.1
-
39
-
-
84888072982
-
Transcriptional downregulation of agr expression in Staphylococcus aureus during growth in human serum can be overcome by constitutively active mutant forms of the sensor kinase AgrC
-
James, E. H., Edwards, A. M. & Wigneshweraraj, S. Transcriptional downregulation of agr expression in Staphylococcus aureus during growth in human serum can be overcome by constitutively active mutant forms of the sensor kinase AgrC. FEMS Microbiol. Lett. 349, 153-162 (2013).
-
(2013)
FEMS Microbiol. Lett.
, vol.349
, pp. 153-162
-
-
James, E.H.1
Edwards, A.M.2
Wigneshweraraj, S.3
-
40
-
-
7744244597
-
Staphylococcus aureus Agra binding to the RNAIII-agr regulatory region
-
Koenig, R. L., Ray, J. L., Maleki, S. J., Smeltzer, M. S. & Hurlburt, B. K. Staphylococcus aureus AgrA binding to the RNAIII-agr regulatory region. J. Bacteriol. 186, 7549-7555 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 7549-7555
-
-
Koenig, R.L.1
Ray, J.L.2
Maleki, S.J.3
Smeltzer, M.S.4
Hurlburt, B.K.5
-
41
-
-
85007518476
-
Control of gene expression by RNA binding protein action on alternative translation initiation sites
-
Re, A., Waldron, L. & Quattrone, A. Control of Gene Expression by RNA Binding Protein Action on Alternative Translation Initiation Sites. PLoS Comput. Biol. 12, e1005198 (2016).
-
(2016)
PLoS Comput. Biol.
, vol.12
, pp. e1005198
-
-
Re, A.1
Waldron, L.2
Quattrone, A.3
-
42
-
-
84964827456
-
Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions
-
Mader, U. et al. Staphylococcus aureus Transcriptome Architecture: From Laboratory to Infection-Mimicking Conditions. PLoS Genet. 12, e1005962 (2016).
-
(2016)
PLoS Genet.
, vol.12
, pp. e1005962
-
-
Mader, U.1
-
43
-
-
84866309652
-
The extracytoplasmic function sigma factor sigmaS protects against both intracellular and extracytoplasmic stresses in Staphylococcus aureus
-
Miller, H. K. et al. The extracytoplasmic function sigma factor sigmaS protects against both intracellular and extracytoplasmic stresses in Staphylococcus aureus. J. Bacteriol. 194, 4342-4354 (2012).
-
(2012)
J. Bacteriol.
, vol.194
, pp. 4342-4354
-
-
Miller, H.K.1
-
44
-
-
84911979115
-
Staphylococcus aureus competence genes: Mapping of the SigH, ComK1 and ComK2 regulons by transcriptome sequencing
-
Fagerlund, A., Granum, P. E. & Havarstein, L. S. Staphylococcus aureus competence genes: mapping of the SigH, ComK1 and ComK2 regulons by transcriptome sequencing. Mol. Microbiol. 94, 557-579 (2014).
-
(2014)
Mol. Microbiol.
, vol.94
, pp. 557-579
-
-
Fagerlund, A.1
Granum, P.E.2
Havarstein, L.S.3
-
45
-
-
0029786387
-
Characterization of the primary sigma factor of Staphylococcus aureus
-
Deora, R. & Misra, T. K. Characterization of the primary sigma factor of Staphylococcus aureus. J. Biol. Chem. 271, 21828-21834 (1996).
-
(1996)
J. Biol. Chem.
, vol.271
, pp. 21828-21834
-
-
Deora, R.1
Misra, T.K.2
-
46
-
-
0034461763
-
Characterization of the sigma(B) regulon in Staphylococcus aureus
-
Gertz, S. et al. Characterization of the sigma(B) regulon in Staphylococcus aureus. J. Bacteriol. 182, 6983-6991 (2000).
-
(2000)
J. Bacteriol.
, vol.182
, pp. 6983-6991
-
-
Gertz, S.1
-
47
-
-
0035988313
-
A phylogenomic study of the general stress response sigma factor sigmaB of Bacillus subtilis and its regulatory proteins
-
Mittenhuber, G. A phylogenomic study of the general stress response sigma factor sigmaB of Bacillus subtilis and its regulatory proteins. J. Mol. Microbiol. Biotechnol. 4, 427-452 (2002).
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 427-452
-
-
Mittenhuber, G.1
-
48
-
-
0037250153
-
PRODORIC: Prokaryotic database of gene regulation
-
Munch, R. et al. PRODORIC: prokaryotic database of gene regulation. Nucleic Acids Res. 31, 266-269 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 266-269
-
-
Munch, R.1
-
49
-
-
3042610199
-
Microarray-based analysis of the Staphylococcus aureus sigmaB regulon
-
Bischoff, M. et al. Microarray-based analysis of the Staphylococcus aureus sigmaB regulon. J. Bacteriol. 186, 4085-4099 (2004).
-
(2004)
J. Bacteriol.
, vol.186
, pp. 4085-4099
-
-
Bischoff, M.1
-
50
-
-
33745742249
-
The sigmaB regulon in Staphylococcus aureus and its regulation
-
Pane-Farre, J., Jonas, B., Forstner, K., Engelmann, S. & Hecker, M. The sigmaB regulon in Staphylococcus aureus and its regulation. Int. J. Med. Microbiol. 296, 237-258 (2006).
-
(2006)
Int. J. Med. Microbiol.
, vol.296
, pp. 237-258
-
-
Pane-Farre, J.1
Jonas, B.2
Forstner, K.3
Engelmann, S.4
Hecker, M.5
-
51
-
-
80052540898
-
The sigmaB-dependent yabJ-spoVG operon is involved in the regulation of extracellular nuclease, lipase, and protease expression in Staphylococcus aureus
-
Schulthess, B. et al. The sigmaB-dependent yabJ-spoVG operon is involved in the regulation of extracellular nuclease, lipase, and protease expression in Staphylococcus aureus. J. Bacteriol. 193, 4954-4962 (2011).
-
(2011)
J. Bacteriol.
, vol.193
, pp. 4954-4962
-
-
Schulthess, B.1
-
52
-
-
85032801898
-
The 5′ UTR of the type I toxin ZorO can both inhibit and enhance translation
-
Wen, J., Harp, J. R. & Fozo, E. M. The 5′ UTR of the type I toxin ZorO can both inhibit and enhance translation. Nucleic Acids Res. (2016).
-
(2016)
Nucleic Acids Res.
-
-
Wen, J.1
Harp, J.R.2
Fozo, E.M.3
-
53
-
-
84925059077
-
Global mapping transcriptional start sites revealed both transcriptional and post-transcriptional regulation of cold adaptation in the methanogenic archaeon Methanolobus psychrophilus
-
Li, J. et al. Global mapping transcriptional start sites revealed both transcriptional and post-transcriptional regulation of cold adaptation in the methanogenic archaeon Methanolobus psychrophilus. Sci. Rep. 5, 9209 (2015).
-
(2015)
Sci. Rep.
, vol.5
, pp. 9209
-
-
Li, J.1
-
54
-
-
36849049884
-
Identification of novel cytolytic peptides as key virulence determinants for community-associated MRSA
-
Wang, R. et al. Identification of novel cytolytic peptides as key virulence determinants for community-associated MRSA. Nat. Med. 13, 1510-1514 (2007).
-
(2007)
Nat. Med.
, vol.13
, pp. 1510-1514
-
-
Wang, R.1
-
55
-
-
84902163304
-
Small proteins can no longer be ignored
-
Storz, G., Wolf, Y. I. & Ramamurthi, K. S. Small proteins can no longer be ignored. Annu. Rev. Biochem. 83, 753-777 (2014).
-
(2014)
Annu. Rev. Biochem.
, vol.83
, pp. 753-777
-
-
Storz, G.1
Wolf, Y.I.2
Ramamurthi, K.S.3
-
56
-
-
0035834489
-
Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles
-
Gautheret, D. & Lambert, A. Direct RNA motif definition and identification from multiple sequence alignments using secondary structure profiles. J. Mol. Biol. 313, 1003-1011 (2001).
-
(2001)
J. Mol. Biol.
, vol.313
, pp. 1003-1011
-
-
Gautheret, D.1
Lambert, A.2
-
57
-
-
0035890840
-
RNAMotif, an RNA secondary structure definition and search algorithm
-
Macke, T. J. et al. RNAMotif, an RNA secondary structure definition and search algorithm. Nucleic Acids Res. 29, 4724-4735 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 4724-4735
-
-
Macke, T.J.1
-
58
-
-
77953763659
-
RsaOG, a new staphylococcal family of highly transcribed non-coding RNA
-
Marchais, A., Bohn, C., Bouloc, P. & Gautheret, D. RsaOG, a new staphylococcal family of highly transcribed non-coding RNA. RNA Biol. 7, 116-119 (2010).
-
(2010)
RNA Biol.
, vol.7
, pp. 116-119
-
-
Marchais, A.1
Bohn, C.2
Bouloc, P.3
Gautheret, D.4
-
59
-
-
84870790549
-
Expression of a cryptic secondary sigma factor gene unveils natural competence for DNA transformation in Staphylococcus aureus
-
Morikawa, K. et al. Expression of a cryptic secondary sigma factor gene unveils natural competence for DNA transformation in Staphylococcus aureus. PLoS Pathog. 8, e1003003 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1003003
-
-
Morikawa, K.1
-
60
-
-
79957614139
-
Role of ComFA in controlling the DNA uptake rate during transformation of competent Bacillus subtilis
-
Takeno, M., Taguchi, H. & Akamatsu, T. Role of ComFA in controlling the DNA uptake rate during transformation of competent Bacillus subtilis. J. Biosci. Bioeng. 111, 618-623 (2011).
-
(2011)
J. Biosci. Bioeng.
, vol.111
, pp. 618-623
-
-
Takeno, M.1
Taguchi, H.2
Akamatsu, T.3
-
61
-
-
84899830782
-
Dual RNA regulatory control of a Staphylococcus aureus virulence factor
-
Chabelskaya, S., Bordeau, V. & Felden, B. Dual RNA regulatory control of a Staphylococcus aureus virulence factor. Nucleic Acids Res. 42, 4847-4858 (2014).
-
(2014)
Nucleic Acids Res.
, vol.42
, pp. 4847-4858
-
-
Chabelskaya, S.1
Bordeau, V.2
Felden, B.3
-
62
-
-
53349128304
-
RNAIII-independent target gene control by the agr quorum-sensing system: Insight into the evolution of virulence regulation in Staphylococcus aureus
-
Queck, S. Y. et al. RNAIII-independent target gene control by the agr quorum-sensing system: insight into the evolution of virulence regulation in Staphylococcus aureus. Mol. Cell 32, 150-158 (2008).
-
(2008)
Mol. Cell
, vol.32
, pp. 150-158
-
-
Queck, S.Y.1
-
63
-
-
79955597012
-
Role of the accessory gene regulator agr in community-associated methicillin-resistant Staphylococcus aureus pathogenesis
-
Cheung, G. Y., Wang, R., Khan, B. A., Sturdevant, D. E. & Otto, M. Role of the accessory gene regulator agr in community-associated methicillin-resistant Staphylococcus aureus pathogenesis. Infect. Immun. 79, 1927-1935 (2011).
-
(2011)
Infect. Immun.
, vol.79
, pp. 1927-1935
-
-
Cheung, G.Y.1
Wang, R.2
Khan, B.A.3
Sturdevant, D.E.4
Otto, M.5
-
64
-
-
79959249644
-
Beta-lactams interfering with PBP1 induce Panton-Valentine leukocidin expression by triggering sarA and rot global regulators of Staphylococcus aureus
-
Dumitrescu, O. et al. Beta-lactams interfering with PBP1 induce Panton-Valentine leukocidin expression by triggering sarA and rot global regulators of Staphylococcus aureus. Antimicrob. Agents. Chemother. 55, 3261-3271 (2011).
-
(2011)
Antimicrob. Agents. Chemother.
, vol.55
, pp. 3261-3271
-
-
Dumitrescu, O.1
-
65
-
-
84893499215
-
Oxacillin alters the toxin expression profile of community-associated methicillin-resistant Staphylococcus aureus
-
Rudkin, J. K. et al. Oxacillin alters the toxin expression profile of community-associated methicillin-resistant Staphylococcus aureus. Antimicrob. Agents. Chemother. 58, 1100-1107 (2014).
-
(2014)
Antimicrob. Agents. Chemother.
, vol.58
, pp. 1100-1107
-
-
Rudkin, J.K.1
-
66
-
-
34547791813
-
Staphylococcus aureus ArcR controls expression of the arginine deiminase operon
-
Makhlin, J. et al. Staphylococcus aureus ArcR controls expression of the arginine deiminase operon. J. Bacteriol. 189, 5976-5986 (2007).
-
(2007)
J. Bacteriol.
, vol.189
, pp. 5976-5986
-
-
Makhlin, J.1
-
67
-
-
84918843257
-
Metabolism via Arginase or Nitric Oxide Synthase: Two Competing Arginine Pathways in Macrophages
-
Rath, M., Muller, I., Kropf, P., Closs, E. I. & Munder, M. Metabolism via Arginase or Nitric Oxide Synthase: Two Competing Arginine Pathways in Macrophages. Front. Immunol. 5, 532 (2014).
-
(2014)
Front. Immunol.
, vol.5
, pp. 532
-
-
Rath, M.1
Muller, I.2
Kropf, P.3
Closs, E.I.4
Munder, M.5
-
68
-
-
57349134511
-
Identification and characterization of sigma, a novel component of the Staphylococcus aureus stress and virulence responses
-
Shaw, L. N. et al. Identification and characterization of sigma, a novel component of the Staphylococcus aureus stress and virulence responses. PLoS One 3, e3844 (2008).
-
(2008)
PLoS One
, vol.3
, pp. e3844
-
-
Shaw, L.N.1
-
69
-
-
33645088941
-
Role of the spacer between the-35 and-10 regions in sigmas promoter selectivity in Escherichia coli
-
Typas, A. & Hengge, R. Role of the spacer between the-35 and-10 regions in sigmas promoter selectivity in Escherichia coli. Mol. Microbiol. 59, 1037-1051 (2006).
-
(2006)
Mol. Microbiol.
, vol.59
, pp. 1037-1051
-
-
Typas, A.1
Hengge, R.2
-
70
-
-
84941740272
-
Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori
-
Bischler, T., Tan, H. S., Nieselt, K. & Sharma, C. M. Differential RNA-seq (dRNA-seq) for annotation of transcriptional start sites and small RNAs in Helicobacter pylori. Methods 86, 89-101 (2015).
-
(2015)
Methods
, vol.86
, pp. 89-101
-
-
Bischler, T.1
Tan, H.S.2
Nieselt, K.3
Sharma, C.M.4
-
71
-
-
84988369382
-
Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq)
-
Babski, J. et al. Genome-wide identification of transcriptional start sites in the haloarchaeon Haloferax volcanii based on differential RNA-Seq (dRNA-Seq). BMC Genomics 17, 629 (2016).
-
(2016)
BMC Genomics
, vol.17
, pp. 629
-
-
Babski, J.1
-
72
-
-
0033591465
-
Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure
-
Mathews, D. H., Sabina, J., Zuker, M. & Turner, D. H. Expanded sequence dependence of thermodynamic parameters improves prediction of RNA secondary structure. J. Mol. Biol. 288, 911-940 (1999).
-
(1999)
J. Mol. Biol.
, vol.288
, pp. 911-940
-
-
Mathews, D.H.1
Sabina, J.2
Zuker, M.3
Turner, D.H.4
-
73
-
-
0042121256
-
Mfold web server for nucleic acid folding and hybridization prediction
-
Zuker, M. Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Res. 31, 3406-3415 (2003).
-
(2003)
Nucleic Acids Res.
, vol.31
, pp. 3406-3415
-
-
Zuker, M.1
-
74
-
-
85018220133
-
The oligopeptide permease opp mediates illicit transport of the bacterial p-site decoding inhibitor GE81112
-
Maio, A., Brandi, L., Donadio, S. & Gualerzi, C. O. The Oligopeptide Permease Opp Mediates Illicit Transport of the Bacterial P-site Decoding Inhibitor GE81112. Antibiotics (Basel) 5 (2016).
-
(2016)
Antibiotics (Basel)
, vol.5
-
-
Maio, A.1
Brandi, L.2
Donadio, S.3
Gualerzi, C.O.4
-
75
-
-
0035115195
-
Molecular characterization of a novel Staphylococcus aureus serine protease operon
-
Reed, S. B. et al. Molecular characterization of a novel Staphylococcus aureus serine protease operon. Infect. Immun. 69, 1521-1527 (2001).
-
(2001)
Infect. Immun.
, vol.69
, pp. 1521-1527
-
-
Reed, S.B.1
-
76
-
-
84861216173
-
Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections
-
Pozzi, C. et al. Methicillin resistance alters the biofilm phenotype and attenuates virulence in Staphylococcus aureus device-associated infections. PLoS Pathog. 8, e1002626 (2012).
-
(2012)
PLoS Pathog.
, vol.8
, pp. e1002626
-
-
Pozzi, C.1
-
77
-
-
67849122320
-
MEME SUITE: Tools for motif discovery and searching
-
Bailey, T. L. et al. MEME SUITE: tools for motif discovery and searching. Nucleic Acids Res. 37, W202-208 (2009).
-
(2009)
Nucleic Acids Res.
, vol.37
, pp. W202-208
-
-
Bailey, T.L.1
|