-
1
-
-
84872265962
-
-
Mutz K.O., Heilkenbrinker A., Lonne M., Walter J.G., Stahl F. Curr. Opin. Biotechnol. 2013, 24:22-30.
-
(2013)
Curr. Opin. Biotechnol.
, vol.24
, pp. 22-30
-
-
Mutz, K.O.1
Heilkenbrinker, A.2
Lonne, M.3
Walter, J.G.4
Stahl, F.5
-
6
-
-
84911861819
-
-
Lahens N.F., Kavakli I.H., Zhang R., Hayer K., Black M.B., Dueck H., Pizarro A., Kim J., Irizarry R., Thomas R.S., Grant G.R., Hogenesch J.B. Genome Biol. 2014, 15:R86.
-
(2014)
Genome Biol.
, vol.15
, pp. R86
-
-
Lahens, N.F.1
Kavakli, I.H.2
Zhang, R.3
Hayer, K.4
Black, M.B.5
Dueck, H.6
Pizarro, A.7
Kim, J.8
Irizarry, R.9
Thomas, R.S.10
Grant, G.R.11
Hogenesch, J.B.12
-
7
-
-
75649147010
-
-
Croucher N.J., Fookes M.C., Perkins T.T., Turner D.J., Marguerat S.B., Keane T., Quail M.A., He M., Assefa S., Bahler J., Kingsley R.A., Parkhill J., Bentley S.D., Dougan G., Thomson N.R. Nucl. Acids Res. 2009, 37:e148.
-
(2009)
Nucl. Acids Res.
, vol.37
, pp. e148
-
-
Croucher, N.J.1
Fookes, M.C.2
Perkins, T.T.3
Turner, D.J.4
Marguerat, S.B.5
Keane, T.6
Quail, M.A.7
He, M.8
Assefa, S.9
Bahler, J.10
Kingsley, R.A.11
Parkhill, J.12
Bentley, S.D.13
Dougan, G.14
Thomson, N.R.15
-
8
-
-
46249103973
-
-
Cloonan N., Forrest A.R., Kolle G., Gardiner B.B., Faulkner G.J., Brown M.K., Taylor D.F., Steptoe A.L., Wani S., Bethel G., Robertson A.J., Perkins A.C., Bruce S.J., Lee C.C., Ranade S.S., Peckham H.E., Manning J.M., McKernan K.J., Grimmond S.M. Nat. Methods 2008, 5:613-619.
-
(2008)
Nat. Methods
, vol.5
, pp. 613-619
-
-
Cloonan, N.1
Forrest, A.R.2
Kolle, G.3
Gardiner, B.B.4
Faulkner, G.J.5
Brown, M.K.6
Taylor, D.F.7
Steptoe, A.L.8
Wani, S.9
Bethel, G.10
Robertson, A.J.11
Perkins, A.C.12
Bruce, S.J.13
Lee, C.C.14
Ranade, S.S.15
Peckham, H.E.16
Manning, J.M.17
McKernan, K.J.18
Grimmond, S.M.19
-
9
-
-
57849105533
-
-
He Y., Vogelstein B., Velculescu V.E., Papadopoulos N., Kinzler K.W. Science 2008, 322:1855-1857.
-
(2008)
Science
, vol.322
, pp. 1855-1857
-
-
He, Y.1
Vogelstein, B.2
Velculescu, V.E.3
Papadopoulos, N.4
Kinzler, K.W.5
-
10
-
-
70350653808
-
-
Parkhomchuk D., Borodina T., Amstislavskiy V., Banaru M., Hallen L., Krobitsch S., Lehrach H., Soldatov A. Nucl. Acids Res. 2009, 37:e123.
-
(2009)
Nucl. Acids Res.
, vol.37
, pp. e123
-
-
Parkhomchuk, D.1
Borodina, T.2
Amstislavskiy, V.3
Banaru, M.4
Hallen, L.5
Krobitsch, S.6
Lehrach, H.7
Soldatov, A.8
-
11
-
-
50849105413
-
-
Sittka A., Lucchini S., Papenfort K., Sharma C.M., Rolle K., Binnewies T.T., Hinton J.C., Vogel J. PLoS Genet. 2008, 4:e1000163.
-
(2008)
PLoS Genet.
, vol.4
, pp. e1000163
-
-
Sittka, A.1
Lucchini, S.2
Papenfort, K.3
Sharma, C.M.4
Rolle, K.5
Binnewies, T.T.6
Hinton, J.C.7
Vogel, J.8
-
12
-
-
77949425194
-
-
Sharma C.M., Hoffmann S., Darfeuille F., Reignier J., Findeiß S., Sittka A., Chabas S., Reiche K., Hackermüller J., Reinhardt R., Stadler P.F., Vogel J. Nature 2010, 464:250-255.
-
(2010)
Nature
, vol.464
, pp. 250-255
-
-
Sharma, C.M.1
Hoffmann, S.2
Darfeuille, F.3
Reignier, J.4
Findeiß, S.5
Sittka, A.6
Chabas, S.7
Reiche, K.8
Hackermüller, J.9
Reinhardt, R.10
Stadler, P.F.11
Vogel, J.12
-
13
-
-
34249708917
-
-
McGrath P.T., Lee H., Zhang L., Iniesta A.A., Hottes A.K., Tan M.H., Hillson N.J., Hu P., Shapiro L., McAdams H.H. Nat. Biotechnol. 2007, 25:584-592.
-
(2007)
Nat. Biotechnol.
, vol.25
, pp. 584-592
-
-
McGrath, P.T.1
Lee, H.2
Zhang, L.3
Iniesta, A.A.4
Hottes, A.K.5
Tan, M.H.6
Hillson, N.J.7
Hu, P.8
Shapiro, L.9
McAdams, H.H.10
-
15
-
-
0035954304
-
-
Argaman L., Hershberg R., Vogel J., Bejerano G., Wagner E.G., Margalit H., Altuvia S. Curr. Biol. 2001, 11:941-950.
-
(2001)
Curr. Biol.
, vol.11
, pp. 941-950
-
-
Argaman, L.1
Hershberg, R.2
Vogel, J.3
Bejerano, G.4
Wagner, E.G.5
Margalit, H.6
Altuvia, S.7
-
16
-
-
0344237410
-
-
Vogel J., Bartels V., Tang T.H., Churakov G., Slagter-Jager J.G., Huttenhofer A., Wagner E.G. Nucl. Acids Res. 2003, 31:6435-6443.
-
(2003)
Nucl. Acids Res.
, vol.31
, pp. 6435-6443
-
-
Vogel, J.1
Bartels, V.2
Tang, T.H.3
Churakov, G.4
Slagter-Jager, J.G.5
Huttenhofer, A.6
Wagner, E.G.7
-
18
-
-
74949137952
-
-
Wurtzel O., Sapra R., Chen F., Zhu Y., Simmons B.A., Sorek R. Genome Res. 2010, 20:133-141.
-
(2010)
Genome Res.
, vol.20
, pp. 133-141
-
-
Wurtzel, O.1
Sapra, R.2
Chen, F.3
Zhu, Y.4
Simmons, B.A.5
Sorek, R.6
-
19
-
-
70449380939
-
-
Mendoza-Vargas A., Olvera L., Olvera M., Grande R., Vega-Alvarado L., Taboada B., Jimenez-Jacinto V., Salgado H., Juarez K., Contreras-Moreira B., Huerta A.M., Collado-Vides J., Morett E. PLoS One 2009, 4:e7526.
-
(2009)
PLoS One
, vol.4
, pp. e7526
-
-
Mendoza-Vargas, A.1
Olvera, L.2
Olvera, M.3
Grande, R.4
Vega-Alvarado, L.5
Taboada, B.6
Jimenez-Jacinto, V.7
Salgado, H.8
Juarez, K.9
Contreras-Moreira, B.10
Huerta, A.M.11
Collado-Vides, J.12
Morett, E.13
-
20
-
-
70449370314
-
-
Cho B.K., Zengler K., Qiu Y., Park Y.S., Knight E.M., Barrett C.L., Gao Y., Palsson B.O. Nat. Biotechnol. 2009, 27:1043-1049.
-
(2009)
Nat. Biotechnol.
, vol.27
, pp. 1043-1049
-
-
Cho, B.K.1
Zengler, K.2
Qiu, Y.3
Park, Y.S.4
Knight, E.M.5
Barrett, C.L.6
Gao, Y.7
Palsson, B.O.8
-
21
-
-
84892777715
-
-
Cho B.K., Kim D., Knight E.M., Zengler K., Palsson B.O. BMC Biol. 2014, 12:4.
-
(2014)
BMC Biol.
, vol.12
, pp. 4
-
-
Cho, B.K.1
Kim, D.2
Knight, E.M.3
Zengler, K.4
Palsson, B.O.5
-
22
-
-
84866160409
-
-
Kim D., Hong J.S., Qiu Y., Nagarajan H., Seo J.H., Cho B.K., Tsai S.F., Palsson B.O. PLoS Genet. 2012, 8:e1002867.
-
(2012)
PLoS Genet.
, vol.8
, pp. e1002867
-
-
Kim, D.1
Hong, J.S.2
Qiu, Y.3
Nagarajan, H.4
Seo, J.H.5
Cho, B.K.6
Tsai, S.F.7
Palsson, B.O.8
-
25
-
-
84878482772
-
-
Dugar G., Herbig A., Förstner K.U., Heidrich N., Reinhardt R., Nieselt K., Sharma C.M. PLoS Genet. 2013, 9:e1003495.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003495
-
-
Dugar, G.1
Herbig, A.2
Förstner, K.U.3
Heidrich, N.4
Reinhardt, R.5
Nieselt, K.6
Sharma, C.M.7
-
26
-
-
84928317979
-
-
Thomason M.K., Bischler T., Eisenbart S.K., Förstner K.U., Zhang A., Herbig A., Nieselt K., Sharma C.M., Storz G. J. Bacteriol. 2015, 197:18-28.
-
(2015)
J. Bacteriol.
, vol.197
, pp. 18-28
-
-
Thomason, M.K.1
Bischler, T.2
Eisenbart, S.K.3
Förstner, K.U.4
Zhang, A.5
Herbig, A.6
Nieselt, K.7
Sharma, C.M.8
Storz, G.9
-
28
-
-
33751548288
-
-
Berezikov E., Thuemmler F., van Laake L.W., Kondova I., Bontrop R., Cuppen E., Plasterk R.H. Nat. Genet. 2006, 38:1375-1377.
-
(2006)
Nat. Genet.
, vol.38
, pp. 1375-1377
-
-
Berezikov, E.1
Thuemmler, F.2
van Laake, L.W.3
Kondova, I.4
Bontrop, R.5
Cuppen, E.6
Plasterk, R.H.7
-
30
-
-
70349667200
-
-
Hoffmann S., Otto C., Kurtz S., Sharma C.M., Khaitovich P., Vogel J., Stadler P.F., Hackermüller J. PLoS Comput. Biol. 2009, 5:e1000502.
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. e1000502
-
-
Hoffmann, S.1
Otto, C.2
Kurtz, S.3
Sharma, C.M.4
Khaitovich, P.5
Vogel, J.6
Stadler, P.F.7
Hackermüller, J.8
-
31
-
-
70349739736
-
-
Nicol J.W., Helt G.A., Blanchard S.G., Raja A., Loraine A.E. Bioinformatics 2009, 25:2730-2731.
-
(2009)
Bioinformatics
, vol.25
, pp. 2730-2731
-
-
Nicol, J.W.1
Helt, G.A.2
Blanchard, S.G.3
Raja, A.4
Loraine, A.E.5
-
32
-
-
84878502476
-
-
Soutourina O.A., Monot M., Boudry P., Saujet L., Pichon C., Sismeiro O., Semenova E., Severinov K., Le Bouguenec C., Coppee J.Y., Dupuy B., Martin-Verstraete I. PLoS Genet. 2013, 9:e1003493.
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003493
-
-
Soutourina, O.A.1
Monot, M.2
Boudry, P.3
Saujet, L.4
Pichon, C.5
Sismeiro, O.6
Semenova, E.7
Severinov, K.8
Le Bouguenec, C.9
Coppee, J.Y.10
Dupuy, B.11
Martin-Verstraete, I.12
-
33
-
-
84885410721
-
-
Lin, D.A.Romero, S.Guan, L.Mamanova, K.J.McDowall Y.F. BMC Genomics 2013, 14:620.
-
(2013)
BMC Genomics
, vol.14
, pp. 620
-
-
Lin, D.A.1
Romero, S.2
Guan, L.3
Mamanova, K.J.4
McDowall, Y.F.5
-
36
-
-
0030835739
-
-
Tomb J.F., White O., Kerlavage A.R., Clayton R.A., Sutton G.G., Fleischmann R.D., Ketchum K.A., Klenk H.P., Gill S., Dougherty B.A., Nelson K., Quackenbush J., Zhou L., Kirkness E.F., Peterson S., Loftus B., Richardson D., Dodson R., Khalak H.G., Glodek A., McKenney K., Fitzegerald L.M., Lee N., Adams M.D., Hickey E.K., Berg D.E., Gocayne J.D., Utterback T.R., Peterson J.D., Kelley J.M., Cotton M.D., Weidman J.M., Fujii C., Bowman C., Watthey L., Wallin E., Hayes W.S., Borodovsky M., Karp P.D., Smith H.O., Fraser C.M., Venter J.C. Nature 1997, 388:539-547.
-
(1997)
Nature
, vol.388
, pp. 539-547
-
-
Tomb, J.F.1
White, O.2
Kerlavage, A.R.3
Clayton, R.A.4
Sutton, G.G.5
Fleischmann, R.D.6
Ketchum, K.A.7
Klenk, H.P.8
Gill, S.9
Dougherty, B.A.10
Nelson, K.11
Quackenbush, J.12
Zhou, L.13
Kirkness, E.F.14
Peterson, S.15
Loftus, B.16
Richardson, D.17
Dodson, R.18
Khalak, H.G.19
Glodek, A.20
McKenney, K.21
Fitzegerald, L.M.22
Lee, N.23
Adams, M.D.24
Hickey, E.K.25
Berg, D.E.26
Gocayne, J.D.27
Utterback, T.R.28
Peterson, J.D.29
Kelley, J.M.30
Cotton, M.D.31
Weidman, J.M.32
Fujii, C.33
Bowman, C.34
Watthey, L.35
Wallin, E.36
Hayes, W.S.37
Borodovsky, M.38
Karp, P.D.39
Smith, H.O.40
Fraser, C.M.41
Venter, J.C.42
more..
-
37
-
-
84864920004
-
-
Liu L., Li Y., Li S., Hu N., He Y., Pong R., Lin D., Lu L., Law M. J. Biomed. Biotechnol. 2012, 2012:251364.
-
(2012)
J. Biomed. Biotechnol.
, vol.2012
, pp. 251364
-
-
Liu, L.1
Li, Y.2
Li, S.3
Hu, N.4
He, Y.5
Pong, R.6
Lin, D.7
Lu, L.8
Law, M.9
-
38
-
-
41649114407
-
-
Frias-Lopez J., Shi Y., Tyson G.W., Coleman M.L., Schuster S.C., Chisholm S.W., Delong E.F. Proc. Natl. Acad. Sci. USA 2008, 105:3805-3810.
-
(2008)
Proc. Natl. Acad. Sci. USA
, vol.105
, pp. 3805-3810
-
-
Frias-Lopez, J.1
Shi, Y.2
Tyson, G.W.3
Coleman, M.L.4
Schuster, S.C.5
Chisholm, S.W.6
Delong, E.F.7
-
39
-
-
84929618653
-
-
Heidrich N., Dugar G., Vogel J., Sharma C.M. Methods Mol. Biol. 2015, 1311:1-21.
-
(2015)
Methods Mol. Biol.
, vol.1311
, pp. 1-21
-
-
Heidrich, N.1
Dugar, G.2
Vogel, J.3
Sharma, C.M.4
-
40
-
-
84887433583
-
-
t Hoen P.A., Friedlander M.R., Almlof J., Sammeth M., Pulyakhina I., Anvar S.Y., Laros J.F., Buermans H.P., Karlberg O., Brannvall M., den Dunnen J.T., van Ommen G.J., Gut I.G., Guigo R., Estivill X., Syvanen A.C., Dermitzakis E.T., Lappalainen T. Nat. Biotechnol. 2013, 31:1015-1022.
-
(2013)
Nat. Biotechnol.
, vol.31
, pp. 1015-1022
-
-
t Hoen, P.A.1
Friedlander, M.R.2
Almlof, J.3
Sammeth, M.4
Pulyakhina, I.5
Anvar, S.Y.6
Laros, J.F.7
Buermans, H.P.8
Karlberg, O.9
Brannvall, M.10
den Dunnen, J.T.11
van Ommen, G.J.12
Gut, I.G.13
Guigo, R.14
Estivill, X.15
Syvanen, A.C.16
Dermitzakis, E.T.17
Lappalainen, T.18
-
41
-
-
84896706999
-
-
Raabe C.A., Tang T.H., Brosius J., Rozhdestvensky T.S. Nucl. Acids Res. 2014, 42:1414-1426.
-
(2014)
Nucl. Acids Res.
, vol.42
, pp. 1414-1426
-
-
Raabe, C.A.1
Tang, T.H.2
Brosius, J.3
Rozhdestvensky, T.S.4
-
42
-
-
84898923218
-
-
Amman F., Wolfinger M.T., Lorenz R., Hofacker I.L., Stadler P.F., Findeiß S. BMC Bioinf. 2014, 15:89.
-
(2014)
BMC Bioinf.
, vol.15
, pp. 89
-
-
Amman, F.1
Wolfinger, M.T.2
Lorenz, R.3
Hofacker, I.L.4
Stadler, P.F.5
Findeiß, S.6
-
44
-
-
84893387968
-
-
Pernitzsch S.R., Tirier S.M., Beier D., Sharma C.M. Proc. Natl. Acad. Sci. USA 2014, 111:E501-E510.
-
(2014)
Proc. Natl. Acad. Sci. USA
, vol.111
, pp. E501-E510
-
-
Pernitzsch, S.R.1
Tirier, S.M.2
Beier, D.3
Sharma, C.M.4
-
45
-
-
84888432432
-
-
Cortes T., Schubert O.T., Rose G., Arnvig K.B., Comas I., Aebersold R., Young D.B. Cell Rep. 2013, 5:1121-1131.
-
(2013)
Cell Rep.
, vol.5
, pp. 1121-1131
-
-
Cortes, T.1
Schubert, O.T.2
Rose, G.3
Arnvig, K.B.4
Comas, I.5
Aebersold, R.6
Young, D.B.7
-
46
-
-
84902988221
-
-
de Groot A., Roche D., Fernandez B., Ludanyi M., Cruveiller S., Pignol D., Vallenet D., Armengaud J., Blanchard L. Genome Biol. Evol. 2014, 6:932-948.
-
(2014)
Genome Biol. Evol.
, vol.6
, pp. 932-948
-
-
de Groot, A.1
Roche, D.2
Fernandez, B.3
Ludanyi, M.4
Cruveiller, S.5
Pignol, D.6
Vallenet, D.7
Armengaud, J.8
Blanchard, L.9
-
47
-
-
84912051124
-
-
Romero D.A., Hasan A.H., Lin Y.F., Kime L., Ruiz-Larrabeiti O., Urem M., Bucca G., Mamanova L., Laing E.E., van Wezel G.P., Smith C.P., Kaberdin V.R., McDowall K.J. Mol. Microbiol. 2014, 94(5):963-987.
-
(2014)
Mol. Microbiol.
, vol.94
, Issue.5
, pp. 963-987
-
-
Romero, D.A.1
Hasan, A.H.2
Lin, Y.F.3
Kime, L.4
Ruiz-Larrabeiti, O.5
Urem, M.6
Bucca, G.7
Mamanova, L.8
Laing, E.E.9
van Wezel, G.P.10
Smith, C.P.11
Kaberdin, V.R.12
McDowall, K.J.13
-
48
-
-
76049099044
-
-
Jager D., Sharma C.M., Thomsen J., Ehlers C., Vogel J., Schmitz R.A. Proc. Natl. Acad. Sci. USA 1882, 106(2009):21878-21882.
-
(1882)
Proc. Natl. Acad. Sci. USA
, vol.106
, Issue.2009
, pp. 21878-21882
-
-
Jager, D.1
Sharma, C.M.2
Thomsen, J.3
Ehlers, C.4
Vogel, J.5
Schmitz, R.A.6
-
49
-
-
33845488317
-
-
Ernst F.D., Stoof J., Horrevoets W.M., Kuipers E.J., Kusters J.G., van Vliet A.H. Infection Immunity 2006, 74:6821-6828.
-
(2006)
Infection Immunity
, vol.74
, pp. 6821-6828
-
-
Ernst, F.D.1
Stoof, J.2
Horrevoets, W.M.3
Kuipers, E.J.4
Kusters, J.G.5
van Vliet, A.H.6
-
53
-
-
84872491794
-
-
Sesto N., Wurtzel O., Archambaud C., Sorek R., Cossart P. Nat. Rev. Microbiol. 2013, 11:75-82.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 75-82
-
-
Sesto, N.1
Wurtzel, O.2
Archambaud, C.3
Sorek, R.4
Cossart, P.5
-
54
-
-
80052502602
-
-
Bendtsen K.M., Erdossy J., Csiszovszki Z., Svenningsen S.L., Sneppen K., Krishna S., Semsey S. Nucl. Acids Res. 2011, 39:6879-6885.
-
(2011)
Nucl. Acids Res.
, vol.39
, pp. 6879-6885
-
-
Bendtsen, K.M.1
Erdossy, J.2
Csiszovszki, Z.3
Svenningsen, S.L.4
Sneppen, K.5
Krishna, S.6
Semsey, S.7
-
55
-
-
84855867638
-
-
Abeel T., Van Parys T., Saeys Y., Galagan J., Van de Peer Y. Nucl. Acids Res. 2012, 40:e12.
-
(2012)
Nucl. Acids Res.
, vol.40
, pp. e12
-
-
Abeel, T.1
Van Parys, T.2
Saeys, Y.3
Galagan, J.4
Van de Peer, Y.5
-
57
-
-
3543051830
-
-
Darling A.C., Mau B., Blattner F.R., Perna N.T. Genome Res. 2004, 14:1394-1403.
-
(2004)
Genome Res.
, vol.14
, pp. 1394-1403
-
-
Darling, A.C.1
Mau, B.2
Blattner, F.R.3
Perna, N.T.4
-
58
-
-
84860715141
-
-
Wurtzel O., Sesto N., Mellin J.R., Karunker I., Edelheit S., Becavin C., Archambaud C., Cossart P., Sorek R. Mol. Syst. Biol. 2012, 8:583.
-
(2012)
Mol. Syst. Biol.
, vol.8
, pp. 583
-
-
Wurtzel, O.1
Sesto, N.2
Mellin, J.R.3
Karunker, I.4
Edelheit, S.5
Becavin, C.6
Archambaud, C.7
Cossart, P.8
Sorek, R.9
|