-
1
-
-
85060318308
-
-
World Malaria Report 2016 (World Health Organization, 2016).
-
World Malaria Report 2016 (World Health Organization, 2016).
-
-
-
-
2
-
-
77955293439
-
Low doses of killed parasite in CpG elicit vigorous CD4+ T cell responses against blood-stage malaria in mice
-
A. Pinzon-Charry, V. McPhun, V. Kienzle, C. Hirunpetcharat, C. Engwerda, J. McCarthy, M. F. Good, Low doses of killed parasite in CpG elicit vigorous CD4+ T cell responses against blood-stage malaria in mice. J. Clin. Invest. 120, 2967–2978 (2010).
-
(2010)
J. Clin. Invest.
, vol.120
, pp. 2967-2978
-
-
Pinzon-Charry, A.1
McPhun, V.2
Kienzle, V.3
Hirunpetcharat, C.4
Engwerda, C.5
McCarthy, J.6
Good, M.F.7
-
3
-
-
84925004026
-
Human antibodies fix complement to inhibit Plasmodium falciparum invasion of erythrocytes and are associated with protection against malaria
-
M. J. Boyle, L. Reiling, G. Feng, C. Langer, F. H. Osier, H. Aspeling-Jones, Y. S. Cheng, J. Stubbs, K. K. A. Tetteh, D. J. Conway, J. S. McCarthy, I. Muller, K. Marsh, R. F. Anders, J. G. Beeson, Human antibodies fix complement to inhibit Plasmodium falciparum invasion of erythrocytes and are associated with protection against malaria. Immunity 42, 580–590 (2015).
-
(2015)
Immunity
, vol.42
, pp. 580-590
-
-
Boyle, M.J.1
Reiling, L.2
Feng, G.3
Langer, C.4
Osier, F.H.5
Aspeling-Jones, H.6
Cheng, Y.S.7
Stubbs, J.8
Tetteh, K.K.A.9
Conway, D.J.10
McCarthy, J.S.11
Muller, I.12
Marsh, K.13
Anders, R.F.14
Beeson, J.G.15
-
4
-
-
84944055167
-
Circulating Th1-cell-type Tfh cells that exhibit impaired B cell help are preferentially activated during acute malaria in children
-
N. Obeng-Adjei, S. Portugal, T. M. Tran, T. B. Yazew, J. Skinner, S. Li, A. Jain, P. L. Felgner, O. K. Doumbo, K. Kayentao, A. Ongoiba, B. Traore, P. D. Crompton, Circulating Th1-cell-type Tfh cells that exhibit impaired B cell help are preferentially activated during acute malaria in children. Cell Rep. 13, 425–439 (2015).
-
(2015)
Cell Rep
, vol.13
, pp. 425-439
-
-
Obeng-Adjei, N.1
Portugal, S.2
Tran, T.M.3
Yazew, T.B.4
Skinner, J.5
Li, S.6
Jain, A.7
Felgner, P.L.8
Doumbo, O.K.9
Kayentao, K.10
Ongoiba, A.11
Traore, B.12
Crompton, P.D.13
-
5
-
-
84920105352
-
CD4 T-cell subsets in malaria: TH1/TH2 revisited
-
D. Perez-Mazliah, J. Langhorne, CD4 T-cell subsets in malaria: TH1/TH2 revisited. Front. Immunol. 5, 671 (2015).
-
(2015)
Front. Immunol.
, vol.5
, pp. 671
-
-
Perez-Mazliah, D.1
Langhorne, J.2
-
6
-
-
84877710866
-
+ T cells from a diverse repertoire produce different effector cell types during infection
-
+ T cells from a diverse repertoire produce different effector cell types during infection. Cell 153, 785–796 (2013).
-
(2013)
Cell
, vol.153
, pp. 785-796
-
-
Tubo, N.J.1
Pagán, A.J.2
Taylor, J.J.3
Nelson, R.W.4
Linehan, J.L.5
Ertelt, J.M.6
Huseby, E.S.7
Way, S.S.8
Jenkins, M.K.9
-
7
-
-
34248175846
-
Cutting edge: Conventional dendritic cells are the critical APC required for the induction of experimental cerebral malaria
-
S. deWalick, F. H. Amante, K. A. McSweeney, L. M. Randall, A. C. Stanley, A. Haque, R. D. Kuns, K. P. A. MacDonald, G. R. Hill, C. R. Engwerda, Cutting edge: Conventional dendritic cells are the critical APC required for the induction of experimental cerebral malaria. J. Immunol. 178, 6033–6037 (2007).
-
(2007)
J. Immunol.
, vol.178
, pp. 6033-6037
-
-
deWalick, S.1
Amante, F.H.2
McSweeney, K.A.3
Randall, L.M.4
Stanley, A.C.5
Haque, A.6
Kuns, R.D.7
MacDonald, K.P.A.8
Hill, G.R.9
Engwerda, C.R.10
-
10
-
-
84870864876
-
+ T helper 1 cell differentiation
-
+ T helper 1 cell differentiation. Immunity 37, 1091–1103 (2012).
-
(2012)
Immunity
, vol.37
, pp. 1091-1103
-
-
Groom, J.R.1
Richmond, J.2
Murooka, T.T.3
Sorensen, E.W.4
Sung, J.H.5
Bankert, K.6
von Andrian, U.H.7
Moon, J.J.8
Mempel, T.R.9
Luster, A.D.10
-
11
-
-
71749100858
-
Inflammatory monocytes facilitate adaptive CD4 T cell responses during respiratory fungal infection
-
T. M. Hohl, A. Rivera, L. Lipuma, A. Gallegos, C. Shi, M. Mack, E. G. Pamer, Inflammatory monocytes facilitate adaptive CD4 T cell responses during respiratory fungal infection. Cell Host Microbe 6, 470–481 (2009).
-
(2009)
Cell Host Microbe
, vol.6
, pp. 470-481
-
-
Hohl, T.M.1
Rivera, A.2
Lipuma, L.3
Gallegos, A.4
Shi, C.5
Mack, M.6
Pamer, E.G.7
-
12
-
-
62849119018
-
Blood-derived inflammatory dendritic cells in lymph nodes stimulate acute T helper type 1 immune responses
-
H. Nakano, K. L. Lin, M. Yanagita, C. Charbonneau, D. N. Cook, T. Kakiuchi, M. D. Gunn, Blood-derived inflammatory dendritic cells in lymph nodes stimulate acute T helper type 1 immune responses. Nat. Immunol. 10, 394–402 (2009).
-
(2009)
Nat. Immunol.
, vol.10
, pp. 394-402
-
-
Nakano, H.1
Lin, K.L.2
Yanagita, M.3
Charbonneau, C.4
Cook, D.N.5
Kakiuchi, T.6
Gunn, M.D.7
-
13
-
-
69249109601
-
Bcl6 and Blimp-1 are reciprocal and antagonistic regulators of T follicular helper cell differentiation
-
R. J. Johnston, A. C. Poholek, D. DiToro, I. Yusuf, D. Eto, B. Barnett, A. L. Dent, J. Craft, S. Crotty, Bcl6 and Blimp-1 are reciprocal and antagonistic regulators of T follicular helper cell differentiation. Science 325, 1006–1010 (2009).
-
(2009)
Science
, vol.325
, pp. 1006-1010
-
-
Johnston, R.J.1
Poholek, A.C.2
DiToro, D.3
Yusuf, I.4
Eto, D.5
Barnett, B.6
Dent, A.L.7
Craft, J.8
Crotty, S.9
-
14
-
-
0034677646
-
A novel transcription factor, T-bet, directs Th1 lineage commitment
-
S. J. Szabo, S. T. Kim, G. L. Costa, X. Zhang, C. G. Fathman, L. H. Glimcher, A novel transcription factor, T-bet, directs Th1 lineage commitment. Cell 100, 655–669 (2000).
-
(2000)
Cell
, vol.100
, pp. 655-669
-
-
Szabo, S.J.1
Kim, S.T.2
Costa, G.L.3
Zhang, X.4
Fathman, C.G.5
Glimcher, L.H.6
-
15
-
-
84876780521
-
+ T cells with commitment to T follicular helper- And T helper 1-cell lineages are generated after acute viral infection
-
+ T cells with commitment to T follicular helper- and T helper 1-cell lineages are generated after acute viral infection. Immunity 38, 805–817 (2013).
-
(2013)
Immunity
, vol.38
, pp. 805-817
-
-
Hale, J.S.1
Youngblood, B.2
Latner, D.R.3
Mohammed, A.U.R.4
Ye, L.5
Akondy, R.S.6
Wu, T.7
Iyer, S.S.8
Ahmed, R.9
-
16
-
-
85060320489
-
-
N. D. Lawrence, “The Gaussian process latent variable model” (Technical Report CS-06-03, University of Sheffield, 2006).
-
N. D. Lawrence, “The Gaussian process latent variable model” (Technical Report CS-06-03, University of Sheffield, 2006).
-
-
-
-
17
-
-
83655184780
-
Overlapping mixtures of Gaussian processes for the data association problem
-
M. Lazaro-Gredilla, S. Van Vaerenbergh, N. D. Lawrence, Overlapping mixtures of Gaussian processes for the data association problem. Pattern Recogn. 45, 1386–1395 (2012).
-
(2012)
Pattern Recogn
, vol.45
, pp. 1386-1395
-
-
Lazaro-Gredilla, M.1
Van Vaerenbergh, S.2
Lawrence, N.D.3
-
18
-
-
84924365758
-
Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape
-
E. Marco, R. L. Karp, G. Guo, P. Robson, A. H. Harte, L. Trippa, G.-C. Yuan, Bifurcation analysis of single-cell gene expression data reveals epigenetic landscape. Proc. Natl. Acad. Sci. U.S.A. 111, E5643–E5650 (2014).
-
(2014)
Proc. Natl. Acad. Sci. U.S.A.
, vol.111
, pp. E5643-E5650
-
-
Marco, E.1
Karp, R.L.2
Guo, G.3
Robson, P.4
Harte, A.H.5
Trippa, L.6
Yuan, G.-C.7
-
19
-
-
84900873950
-
The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells
-
C. Trapnell, D. Cacchiarelli, J. Grimsby, P. Pokharel, S. Li, M. Morse, N. J. Lennon, K. J. Livak, T. S. Mikkelsen, J. L. Rinn, The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat. Biotechnol. 32, 381–386 (2014).
-
(2014)
Nat. Biotechnol.
, vol.32
, pp. 381-386
-
-
Trapnell, C.1
Cacchiarelli, D.2
Grimsby, J.3
Pokharel, P.4
Li, S.5
Morse, M.6
Lennon, N.J.7
Livak, K.J.8
Mikkelsen, T.S.9
Rinn, J.L.10
-
20
-
-
84977080410
-
Mpath maps multi-branching single-cell trajectories revealing progenitor cell progression during development
-
J. Chen, A. Schlitzer, S. Chakarov, F. Ginhoux, M. Poidinger, Mpath maps multi-branching single-cell trajectories revealing progenitor cell progression during development. Nat. Commun. 7, 11988 (2016).
-
(2016)
Nat. Commun.
, vol.7
, pp. 11988
-
-
Chen, J.1
Schlitzer, A.2
Chakarov, S.3
Ginhoux, F.4
Poidinger, M.5
-
21
-
-
84984643819
-
Diffusion pseudotime robustly reconstructs lineage branching
-
L. Haghverdi, M. Büttner, F. A. Wolf, F. Buettner, F. J. Theis, Diffusion pseudotime robustly reconstructs lineage branching. Nat. Methods 13, 845–848 (2016).
-
(2016)
Nat. Methods
, vol.13
, pp. 845-848
-
-
Haghverdi, L.1
Büttner, M.2
Wolf, F.A.3
Buettner, F.4
Theis, F.J.5
-
22
-
-
84974587998
-
Wishbone identifies bifurcating developmental trajectories from single-cell data
-
M. Setty, M. D. Tadmor, S. Reich-Zeliger, O. Angel, T. M. Salame, P. Kathail, K. Choi, S. Bendall, N. Friedman, D. Pe’er, Wishbone identifies bifurcating developmental trajectories from single-cell data. Nat. Biotechnol. 34, 637–645 (2016).
-
(2016)
Nat. Biotechnol.
, vol.34
, pp. 637-645
-
-
Setty, M.1
Tadmor, M.D.2
Reich-Zeliger, S.3
Angel, O.4
Salame, T.M.5
Kathail, P.6
Choi, K.7
Bendall, S.8
Friedman, N.9
Pe’er, D.10
-
23
-
-
84900529199
-
Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq
-
B. Treutlein, D. G. Brownfield, A. R. Wu, N. F. Neff, G. L. Mantalas, F. H. Espinoza, T. J. Desai, M. A. Krasnow, S. R. Quake, Reconstructing lineage hierarchies of the distal lung epithelium using single-cell RNA-seq. Nature 509, 371–375 (2014).
-
(2014)
Nature
, vol.509
, pp. 371-375
-
-
Treutlein, B.1
Brownfield, D.G.2
Wu, A.R.3
Neff, N.F.4
Mantalas, G.L.5
Espinoza, F.H.6
Desai, T.J.7
Krasnow, M.A.8
Quake, S.R.9
-
24
-
-
84930613577
-
The transcriptome and DNA methylome landscapes of human primordial germ cells
-
F. Guo, L. Yan, H. Guo, L. Li, B. Hu, Y. Zhao, J. Yong, Y. Hu, X. Wang, Y. Wei, W. Wang, R. Li, J. Yan, X. Zhi, Y. Zhang, H. Jin, W. Zhang, Y. Hou, P. Zhu, J. Li, L. Zhang, S. Liu, Y. Ren, X. Zhu, L. Wen, Y. Q. Gao, F. Tang, J. Qiao, The transcriptome and DNA methylome landscapes of human primordial germ cells. Cell 161, 1437–1452 (2015).
-
(2015)
Cell
, vol.161
, pp. 1437-1452
-
-
Guo, F.1
Yan, L.2
Guo, H.3
Li, L.4
Hu, B.5
Zhao, Y.6
Yong, J.7
Hu, Y.8
Wang, X.9
Wei, Y.10
Wang, W.11
Li, R.12
Yan, J.13
Zhi, X.14
Zhang, Y.15
Jin, H.16
Zhang, W.17
Hou, Y.18
Zhu, P.19
Li, J.20
Zhang, L.21
Liu, S.22
Ren, Y.23
Zhu, X.24
Wen, L.25
Gao, Y.Q.26
Tang, F.27
Qiao, J.28
more..
-
25
-
-
84939617686
-
LEF-1 and TCF-1 orchestrate TFH differentiation by regulating differentiation circuits upstream of the transcriptional repressor Bcl6
-
Y. S. Choi, J. A. Gullicksrud, S. Xing, Z. Zeng, Q. Shan, F. Li, P. E. Love, W. Peng, H.-H. Xue, S. Crotty, LEF-1 and TCF-1 orchestrate TFH differentiation by regulating differentiation circuits upstream of the transcriptional repressor Bcl6. Nat. Immunol. 16, 980–990 (2015).
-
(2015)
Nat. Immunol.
, vol.16
, pp. 980-990
-
-
Choi, Y.S.1
Gullicksrud, J.A.2
Xing, S.3
Zeng, Z.4
Shan, Q.5
Li, F.6
Love, P.E.7
Peng, W.8
Xue, H.-H.9
Crotty, S.10
-
26
-
-
84939603374
-
The transcription factor TCF-1 initiates the differentiation of TFH cells during acute viral infection
-
L. Xu, Y. Cao, Z. Xie, Q. Huang, Q. Bai, X. Yang, R. He, Y. Hao, H. Wang, T. Zhao, Z. Fan, A. Qin, J. Ye, X. Zhou, L. Ye, Y. Wu, The transcription factor TCF-1 initiates the differentiation of TFH cells during acute viral infection. Nat. Immunol. 16, 991–999 (2015).
-
(2015)
Nat. Immunol.
, vol.16
, pp. 991-999
-
-
Xu, L.1
Cao, Y.2
Xie, Z.3
Huang, Q.4
Bai, Q.5
Yang, X.6
He, R.7
Hao, Y.8
Wang, H.9
Zhao, T.10
Fan, Z.11
Qin, A.12
Ye, J.13
Zhou, X.14
Ye, L.15
Wu, Y.16
-
27
-
-
84969795465
-
Id2 reinforces TH1 differentiation and inhibits E2A to repress TFH differentiation
-
L. A. Shaw, S. Bélanger, K. D. Omilusik, S. Cho, J. P. Scott-Browne, J. P. Nance, J. Goulding, A. Lasorella, L.-F. Lu, S. Crotty, A. W. Goldrath, Id2 reinforces TH1 differentiation and inhibits E2A to repress TFH differentiation. Nat. Immunol. 17, 834–843 (2016).
-
(2016)
Nat. Immunol.
, vol.17
, pp. 834-843
-
-
Shaw, L.A.1
Bélanger, S.2
Omilusik, K.D.3
Cho, S.4
Scott-Browne, J.P.5
Nance, J.P.6
Goulding, J.7
Lasorella, A.8
Lu, L.-F.9
Crotty, S.10
Goldrath, A.W.11
-
28
-
-
24744448228
-
Balanced expression of CXCR5 and CCR7 on follicular T helper cells determines their transient positioning to lymph node follicles and is essential for efficient B-cell help
-
S. Hardtke, L. Ohl, R. Förster, Balanced expression of CXCR5 and CCR7 on follicular T helper cells determines their transient positioning to lymph node follicles and is essential for efficient B-cell help. Blood 106, 1924–1931 (2005).
-
(2005)
Blood
, vol.106
, pp. 1924-1931
-
-
Hardtke, S.1
Ohl, L.2
Förster, R.3
-
29
-
-
84942436387
-
Trypanosoma cruzi infection imparts a regulatory program in dendritic cells and T cells via galectin-1–dependent mechanisms
-
C. V. Poncini, J. M. Ilarregui, E. I. Batalla, S. Engels, J. P. Cerliani, M. A. Cucher, Y. van Kooyk, S. M. González-Cappa, G. A. Rabinovich, Trypanosoma cruzi infection imparts a regulatory program in dendritic cells and T cells via galectin-1–dependent mechanisms. J. Immunol. 195, 3311–3324 (2015).
-
(2015)
J. Immunol.
, vol.195
, pp. 3311-3324
-
-
Poncini, C.V.1
Ilarregui, J.M.2
Batalla, E.I.3
Engels, S.4
Cerliani, J.P.5
Cucher, M.A.6
van Kooyk, Y.7
González-Cappa, S.M.8
Rabinovich, G.A.9
-
31
-
-
33644834789
-
Common markers of proliferation
-
M. L. Whitfield, L. K. George, G. D. Grant, C. M. Perou, Common markers of proliferation. Nat. Rev. Cancer 6, 99–106 (2006).
-
(2006)
Nat. Rev. Cancer
, vol.6
, pp. 99-106
-
-
Whitfield, M.L.1
George, L.K.2
Grant, G.D.3
Perou, C.M.4
-
32
-
-
84958103478
-
Single-cell RNA-sequencing reveals a continuous spectrum of differentiation in hematopoietic cells
-
I. C. Macaulay, V. Svensson, C. Labalette, L. Ferreira, F. Hamey, T. Voet, S. A. Teichmann, A. Cvejic, Single-cell RNA-sequencing reveals a continuous spectrum of differentiation in hematopoietic cells. Cell Rep. 14, 966–977 (2016).
-
(2016)
Cell Rep
, vol.14
, pp. 966-977
-
-
Macaulay, I.C.1
Svensson, V.2
Labalette, C.3
Ferreira, L.4
Hamey, F.5
Voet, T.6
Teichmann, S.A.7
Cvejic, A.8
-
33
-
-
0034606359
-
Follicular B helper T cells express CXC chemokine receptor 5, localize to B cell follicles, and support immunoglobulin production
-
D. Breitfeld, L. Ohl, E. Kremmer, J. Ellwart, F. Sallusto, M. Lipp, R. Förster, Follicular B helper T cells express CXC chemokine receptor 5, localize to B cell follicles, and support immunoglobulin production. J. Exp. Med. 192, 1545–1552 (2000).
-
(2000)
J. Exp. Med.
, vol.192
, pp. 1545-1552
-
-
Breitfeld, D.1
Ohl, L.2
Kremmer, E.3
Ellwart, J.4
Sallusto, F.5
Lipp, M.6
Förster, R.7
-
34
-
-
0034606348
-
CXC chemokine receptor 5 expression defines follicular homing T cells with B cell helper function
-
P. Schaerli, K. Willimann, A. B. Lang, M. Lipp, P. Loetscher, B. Moser, CXC chemokine receptor 5 expression defines follicular homing T cells with B cell helper function. J. Exp. Med. 192, 1553–1562 (2000).
-
(2000)
J. Exp. Med.
, vol.192
, pp. 1553-1562
-
-
Schaerli, P.1
Willimann, K.2
Lang, A.B.3
Lipp, M.4
Loetscher, P.5
Moser, B.6
-
35
-
-
84893905629
-
Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types
-
D. A. Jaitin, E. Kenigsberg, H. Keren-Shaul, N. Elefant, F. Paul, I. Zaretsky, A. Mildner, N. Cohen, S. Jung, A. Tanay, I. Amit, Massively parallel single-cell RNA-seq for marker-free decomposition of tissues into cell types. Science 343, 776–779 (2014).
-
(2014)
Science
, vol.343
, pp. 776-779
-
-
Jaitin, D.A.1
Kenigsberg, E.2
Keren-Shaul, H.3
Elefant, N.4
Paul, F.5
Zaretsky, I.6
Mildner, A.7
Cohen, N.8
Jung, S.9
Tanay, A.10
Amit, I.11
-
36
-
-
84899574465
-
Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development
-
S. C. Bendall, K. L. Davis, E.-A. D. Amir, M. D. Tadmor, E. F. Simonds, T. J. Chen, D. K. Shenfeld, G. P. Nolan, D. Pe’er, Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development. Cell 157, 714–725 (2014).
-
(2014)
Cell
, vol.157
, pp. 714-725
-
-
Bendall, S.C.1
Davis, K.L.2
Amir, E.-A.D.3
Tadmor, M.D.4
Simonds, E.F.5
Chen, T.J.6
Shenfeld, D.K.7
Nolan, G.P.8
Pe’er, D.9
-
37
-
-
84870285173
-
Bcl6 expression specifies the T follicular helper cell program in vivo
-
X. Liu, X. Yan, B. Zhong, R. I. Nurieva, A. Wang, X. Wang, N. Martin-Orozco, Y. Wang, S. H. Chang, E. Esplugues, R. A. Flavell, Q. Tian, C. Dong, Bcl6 expression specifies the T follicular helper cell program in vivo. J. Exp. Med. 209, 1841–1852 (2012).
-
(2012)
J. Exp. Med.
, vol.209
, pp. 1841-1852
-
-
Liu, X.1
Yan, X.2
Zhong, B.3
Nurieva, R.I.4
Wang, A.5
Wang, X.6
Martin-Orozco, N.7
Wang, Y.8
Chang, S.H.9
Esplugues, E.10
Flavell, R.A.11
Tian, Q.12
Dong, C.13
-
38
-
-
79959328032
-
ICOS receptor instructs T follicular helper cell versus effector cell differentiation via induction of the transcriptional repressor Bcl6
-
Y. S. Choi, R. Kageyama, D. Eto, T. C. Escobar, R. J. Johnston, L. Monticelli, C. Lao, S. Crotty, ICOS receptor instructs T follicular helper cell versus effector cell differentiation via induction of the transcriptional repressor Bcl6. Immunity 34, 932–946 (2011).
-
(2011)
Immunity
, vol.34
, pp. 932-946
-
-
Choi, Y.S.1
Kageyama, R.2
Eto, D.3
Escobar, T.C.4
Johnston, R.J.5
Monticelli, L.6
Lao, C.7
Crotty, S.8
-
39
-
-
80755172184
-
Opposing signals from the Bcl6 transcription factor and the interleukin-2 receptor generate T helper 1 central and effector memory cells
-
M. Pepper, A. J. Pagán, B. Z. Igyártó, J. J. Taylor, M. K. Jenkins, Opposing signals from the Bcl6 transcription factor and the interleukin-2 receptor generate T helper 1 central and effector memory cells. Immunity 35, 583–595 (2011).
-
(2011)
Immunity
, vol.35
, pp. 583-595
-
-
Pepper, M.1
Pagán, A.J.2
Igyártó, B.Z.3
Taylor, J.J.4
Jenkins, M.K.5
-
40
-
-
84902182316
-
Type I IFN signaling in CD8- DCs impairs Th1-dependent malaria immunity
-
A. Haque, S. E. Best, M. Montes de Oca, K. R. James, A. Ammerdorffer, C. L. Edwards, F. de Labastida Rivera, F. H. Amante, P. T. Bunn, M. Sheel, I. Sebina, M. Koyama, A. Varelias, P. J. Hertzog, U. Kalinke, S. Y. Gun, L. Rénia, C. Ruedl, K. P. A. MacDonald, G. R. Hill, C. R. Engwerda, Type I IFN signaling in CD8- DCs impairs Th1-dependent malaria immunity. J. Clin. Invest. 124, 2483–2496 (2014).
-
(2014)
J. Clin. Invest.
, vol.124
, pp. 2483-2496
-
-
Haque, A.1
Best, S.E.2
Montes de Oca, M.3
James, K.R.4
Ammerdorffer, A.5
Edwards, C.L.6
de Labastida Rivera, F.7
Amante, F.H.8
Bunn, P.T.9
Sheel, M.10
Sebina, I.11
Koyama, M.12
Varelias, A.13
Hertzog, P.J.14
Kalinke, U.15
Gun, S.Y.16
Rénia, L.17
Ruedl, C.18
MacDonald, K.P.A.19
Hill, G.R.20
Engwerda, C.R.21
more..
-
41
-
-
84959450362
-
Expanding antigen-specific regulatory networks to treat autoimmunity
-
X. Clemente-Casares, J. Blanco, P. Ambalavanan, J. Yamanouchi, S. Singha, C. Fandos, S. Tsai, J. Wang, N. Garabatos, C. Izquierdo, S. Agrawal, M. B. Keough, V. W. Yong, E. James, A. Moore, Y. Yang, T. Stratmann, P. Serra, P. Santamaria, Expanding antigen-specific regulatory networks to treat autoimmunity. Nature 530, 434–440 (2016).
-
(2016)
Nature
, vol.530
, pp. 434-440
-
-
Clemente-Casares, X.1
Blanco, J.2
Ambalavanan, P.3
Yamanouchi, J.4
Singha, S.5
Fandos, C.6
Tsai, S.7
Wang, J.8
Garabatos, N.9
Izquierdo, C.10
Agrawal, S.11
Keough, M.B.12
Yong, V.W.13
James, E.14
Moore, A.15
Yang, Y.16
Stratmann, T.17
Serra, P.18
Santamaria, P.19
-
42
-
-
40349089873
-
– adaptive regulatory T cells modulates parasite clearance and pathology during malaria infection
-
– adaptive regulatory T cells modulates parasite clearance and pathology during malaria infection. PLOS Pathog. 4, e1000004 (2008).
-
(2008)
PLOS Pathog
, vol.4
-
-
Couper, K.N.1
Blount, D.G.2
Wilson, M.S.3
Hafalla, J.C.4
Belkaid, Y.5
Kamanaka, M.6
Flavell, R.A.7
de Souza, J.B.8
Riley, E.M.9
-
43
-
-
77955903212
-
The aryl hydrocarbon receptor interacts with c-Maf to promote the differentiation of type 1 regulatory T cells induced by IL-27
-
L. Apetoh, F. J. Quintana, C. Pot, N. Joller, S. Xiao, D. Kumar, E. J. Burns, D. H. Sherr, H. L. Weiner, V. K. Kuchroo, The aryl hydrocarbon receptor interacts with c-Maf to promote the differentiation of type 1 regulatory T cells induced by IL-27. Nat. Immunol. 11, 854–861 (2010).
-
(2010)
Nat. Immunol.
, vol.11
, pp. 854-861
-
-
Apetoh, L.1
Quintana, F.J.2
Pot, C.3
Joller, N.4
Xiao, S.5
Kumar, D.6
Burns, E.J.7
Sherr, D.H.8
Weiner, H.L.9
Kuchroo, V.K.10
-
44
-
-
80755163540
-
+ cell properties during viral infection
-
+ cell properties during viral infection. Immunity 35, 633–646 (2011).
-
(2011)
Immunity
, vol.35
, pp. 633-646
-
-
Marshall, H.D.1
Chandele, A.2
Woo Jung, Y.3
Meng, H.4
Poholek, A.C.5
Parish, I.A.6
Rutishauser, R.7
Cui, W.8
Kleinstein, S.H.9
Craft, J.10
Kaech, S.M.11
-
45
-
-
80052173363
-
T-zone localized monocyte-derived dendritic cells promote Th1 priming to Salmonella
-
A. Flores-Langarica, J. L. Marshall, S. Bobat, E. Mohr, J. Hitchcock, E. A. Ross, R. E. Coughlan, M. Khan, N. Van Rooijen, I. R. Henderson, I. C. Maclennan, A. F. Cunningham, T-zone localized monocyte-derived dendritic cells promote Th1 priming to Salmonella. Eur. J. Immunol. 41, 2654–2665 (2011).
-
(2011)
Eur. J. Immunol.
, vol.41
, pp. 2654-2665
-
-
Flores-Langarica, A.1
Marshall, J.L.2
Bobat, S.3
Mohr, E.4
Hitchcock, J.5
Ross, E.A.6
Coughlan, R.E.7
Khan, M.8
Van Rooijen, N.9
Henderson, I.R.10
Maclennan, I.C.11
Cunningham, A.F.12
-
46
-
-
84894258518
-
+ T cell dysfunction during chronic infection
-
+ T cell dysfunction during chronic infection. Immunity 40, 289–302 (2014).
-
(2014)
Immunity
, vol.40
, pp. 289-302
-
-
Crawford, A.1
Angelosanto, J.M.2
Kao, C.3
Doering, T.A.4
Odorizzi, P.M.5
Barnett, B.E.6
John Wherry, E.7
-
47
-
-
84926295057
-
+ T cell transcriptomes
-
+ T cell transcriptomes. Biol. Direct 10, 14 (2015).
-
(2015)
Biol. Direct
, vol.10
, pp. 14
-
-
Stubbington, M.J.1
Mahata, B.2
Svensson, V.3
Deonarine, A.4
Nissen, J.K.5
Betz, A.G.6
Teichmann, S.A.7
-
48
-
-
84941080809
-
CycleBase 3.0: A multi-organism database on cell-cycle regulation and phenotypes
-
A. Santos, R. Wernersson, L. J. Jensen, Cyclebase 3.0: A multi-organism database on cell-cycle regulation and phenotypes. Nucleic Acids Res. 43, D1140–D1144 (2015).
-
(2015)
Nucleic Acids Res
, vol.43
, pp. D1140-D1144
-
-
Santos, A.1
Wernersson, R.2
Jensen, L.J.3
-
49
-
-
85060323127
-
-
C. E. Rasmussen, C. K. I. Williams, Gaussian Processes for Machine Learning (MIT Press, 2006).
-
C. E. Rasmussen, C. K. I. Williams, Gaussian Processes for Machine Learning (MIT Press, 2006).
-
-
-
-
50
-
-
84862302424
-
Bayesian Gaussian process latent variable model
-
Y. W. Teh, D. M. Titterington, Eds
-
M. K. Titsias, N. D. Lawrence, Bayesian Gaussian process latent variable model, in Proceedings of the Thirteenth International Workshop on Artificial Intelligence and Statistics, Y. W. Teh, D. M. Titterington, Eds. (2010), pp. 844–851.
-
(2010)
Proceedings of The Thirteenth International Workshop on Artificial Intelligence and Statistics
, pp. 844-851
-
-
Titsias, M.K.1
Lawrence, N.D.2
-
51
-
-
84983497196
-
Pseudotime estimation: Deconfounding single cell time series
-
J. E. Reid, L. Wernisch, Pseudotime estimation: Deconfounding single cell time series. Bioinformatics 32, 2973–2980 (2016).
-
(2016)
Bioinformatics
, vol.32
, pp. 2973-2980
-
-
Reid, J.E.1
Wernisch, L.2
-
53
-
-
84877726166
-
-
F. Pereira, C. J. C. Burges, L. Bottou, K. Q. Weinberger, Eds. Curran Associates Inc
-
J. Hensman, M. Rattray, N. D. Lawrence, in Advances in Neural Information Processing Systems 25, F. Pereira, C. J. C. Burges, L. Bottou, K. Q. Weinberger, Eds. (Curran Associates Inc., 2012), pp. 2888–2896.
-
(2012)
Advances in Neural Information Processing Systems
, vol.25
, pp. 2888-2896
-
-
Hensman, J.1
Rattray, M.2
Lawrence, N.D.3
-
54
-
-
84903574951
-
Bayesian approach to single-cell differential expression analysis
-
P. V. Kharchenko, L. Silberstein, D. T. Scadden, Bayesian approach to single-cell differential expression analysis. Nat. Methods 11, 740–742 (2014).
-
(2014)
Nat. Methods
, vol.11
, pp. 740-742
-
-
Kharchenko, P.V.1
Silberstein, L.2
Scadden, D.T.3
-
55
-
-
84941753288
-
Diffusion maps for high-dimensional single-cell analysis of differentiation data
-
L. Haghverdi, F. Buettner, F. J. Theis, Diffusion maps for high-dimensional single-cell analysis of differentiation data. Bioinformatics 31, 2989–2998 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 2989-2998
-
-
Haghverdi, L.1
Buettner, F.2
Theis, F.J.3
-
56
-
-
85060320396
-
-
K. Campbell, C. Yau, http://biorxiv.org/content/early/2015/09/15/026872 (2015).
-
K. Campbell, C. Yau, http://biorxiv.org/content/early/2015/09/15/026872 (2015).
-
-
-
-
57
-
-
63449105389
-
Horseshoes in multidimensional scaling and local kernel methods
-
P. Diaconis, S. Goel, S. Holmes, Horseshoes in multidimensional scaling and local kernel methods. Ann. Appl. Stat. 2, 777–807 (2008).
-
(2008)
Ann. Appl. Stat.
, vol.2
, pp. 777-807
-
-
Diaconis, P.1
Goel, S.2
Holmes, S.3
-
59
-
-
77950803115
-
A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series
-
O. Stegle, K. J. Denby, E. J. Cooke, D. L. Wild, Z. Ghahramani, K. M. Borgwardt, A robust Bayesian two-sample test for detecting intervals of differential gene expression in microarray time series. J. Comput. Biol. 17, 355–367 (2010).
-
(2010)
J. Comput. Biol.
, vol.17
, pp. 355-367
-
-
Stegle, O.1
Denby, K.J.2
Cooke, E.J.3
Wild, D.L.4
Ghahramani, Z.5
Borgwardt, K.M.6
-
60
-
-
84990898428
-
Inferring the perturbation time from biological time course data
-
J. Yang, C. A. Penfold, M. R. Grant, M. Rattray, Inferring the perturbation time from biological time course data. Bioinformatics 32, 2956–2964 (2016).
-
(2016)
Bioinformatics
, vol.32
, pp. 2956-2964
-
-
Yang, J.1
Penfold, C.A.2
Grant, M.R.3
Rattray, M.4
-
61
-
-
80053901777
-
Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in Male reproduction and possibly brain function
-
A.-L. Niu, Y.-Q. Wang, H. Zhang, C.-H. Liao, J.-K. Wang, R. Zhang, J. Che, B. Su, Rapid evolution and copy number variation of primate RHOXF2, an X-linked homeobox gene involved in male reproduction and possibly brain function. BMC Evol. Biol. 11, 298 (2011).
-
(2011)
BMC Evol. Biol.
, vol.11
, pp. 298
-
-
Niu, A.-L.1
Wang, Y.-Q.2
Zhang, H.3
Liao, C.-H.4
Wang, J.-K.5
Zhang, R.6
Che, J.7
Su, B.8
-
62
-
-
0042124978
-
Identification of eight members of the Argonaute family in the human genome
-
T. Sasaki, A. Shiohama, S. Minoshima, N. Shimizu, Identification of eight members of the Argonaute family in the human genome. Genomics 82, 323–330 (2003).
-
(2003)
Genomics
, vol.82
, pp. 323-330
-
-
Sasaki, T.1
Shiohama, A.2
Minoshima, S.3
Shimizu, N.4
-
63
-
-
84953214164
-
Measuring absolute RNA copy numbers at high temporal resolution reveals transcriptome kinetics in development
-
N. D. Owens, I. L. Blitz, M. A. Lane, I. Patrushev, J. D. Overton, M. J. Gilchrist, M. J. Gilchrist, K. W. Y. Cho, Measuring absolute RNA copy numbers at high temporal resolution reveals transcriptome kinetics in development. Cell Rep. 14, 632–647 (2016).
-
(2016)
Cell Rep
, vol.14
, pp. 632-647
-
-
Owens, N.D.1
Blitz, I.L.2
Lane, M.A.3
Patrushev, I.4
Overton, J.D.5
Gilchrist, M.J.6
Gilchrist, M.J.7
Cho, K.W.Y.8
-
64
-
-
84960194523
-
T cell fate and clonality inference from single-cell transcriptomes
-
M. J. T. Stubbington, T. Lönnberg, V. Proserpio, S. Clare, A. O. Speak, G. Dougan, S. A. Teichmann, T cell fate and clonality inference from single-cell transcriptomes. Nat. Methods 13, 329–332 (2016).
-
(2016)
Nat. Methods
, vol.13
, pp. 329-332
-
-
Stubbington, M.J.T.1
Lönnberg, T.2
Proserpio, V.3
Clare, S.4
Speak, A.O.5
Dougan, G.6
Teichmann, S.A.7
|