-
1
-
-
66249116333
-
The genetic structure and history of Africans and African Americans
-
Tishkoff, S. A. et al. The genetic structure and history of Africans and African Americans. Science 324, 1035-1044 (2009).
-
(2009)
Science
, vol.324
, pp. 1035-1044
-
-
Tishkoff, S.A.1
-
2
-
-
84864576715
-
Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African Hunter-gatherers
-
Lachance, J. et al. Evolutionary history and adaptation from high-coverage whole-genome sequences of diverse African Hunter-gatherers. Cell 150, 457-469 (2012).
-
(2012)
Cell
, vol.150
, pp. 457-469
-
-
Lachance, J.1
-
3
-
-
84922358781
-
Static and moving frontiers: The genetic landscape of Southern African Bantu-speaking populations
-
Marks, S. J. et al. Static and moving frontiers: the genetic landscape of Southern African Bantu-speaking populations. Mol. Biol. Evol 32, 29-43 (2015).
-
(2015)
Mol. Biol. Evol
, vol.32
, pp. 29-43
-
-
Marks, S.J.1
-
4
-
-
79955103752
-
Hunter-gatherer genomic diversity suggests a southern African origin for modern humans
-
Henn, B. M. et al. Hunter-gatherer genomic diversity suggests a southern African origin for modern humans. Proc. Natl Acad. Sci. USA 108, 5154-5162 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 5154-5162
-
-
Henn, B.M.1
-
5
-
-
84955508579
-
Distance from sub-Saharan Africa predicts mutational load in diverse human genomes
-
Henn, B. M. et al. Distance from sub-Saharan Africa predicts mutational load in diverse human genomes. Proc. Natl Acad. Sc. USA 113, E440-E449 (2016).
-
(2016)
Proc. Natl Acad. Sc. USA
, vol.113
, pp. E440-E449
-
-
Henn, B.M.1
-
6
-
-
79960429419
-
Genomics for the world
-
Bustamante, C. D., Burchard, E. G. & De la Vega, F. M. Genomics for the world. Nature 475, 163-165 (2011).
-
(2011)
Nature
, vol.475
, pp. 163-165
-
-
Bustamante, C.D.1
Burchard, E.G.2
De La Vega, F.M.3
-
7
-
-
84856035196
-
Africa: The next frontier for human disease gene discovery?
-
Ramsay, M., Tiemessen, C. T., Choudhury, A. & Soodyall, H. Africa: the next frontier for human disease gene discovery? Hum. Mol. Genet. 20, R214-R220 (2011).
-
(2011)
Hum. Mol. Genet.
, vol.20
, pp. R214-R220
-
-
Ramsay, M.1
Tiemessen, C.T.2
Choudhury, A.3
Soodyall, H.4
-
8
-
-
84902668426
-
Research capacity. Enabling the genomic revolution in Africa
-
H3Africa Consortium. et al.
-
H3Africa Consortium. et al. Research capacity. Enabling the genomic revolution in Africa. Science 344, 1346-1348 (2014).
-
(2014)
Science
, vol.344
, pp. 1346-1348
-
-
-
9
-
-
84923186799
-
The African genome variation project shapes medical genetics in Africa
-
Gurdasani, D. et al. The African genome variation project shapes medical genetics in Africa. Nature 517, 327-332 (2014).
-
(2014)
Nature
, vol.517
, pp. 327-332
-
-
Gurdasani, D.1
-
10
-
-
84925799258
-
Unravelling the hidden ancestry of American admixed populations
-
Montinaro, F. et al. Unravelling the hidden ancestry of American admixed populations. Nat. Commun. 6, 6596 (2015).
-
(2015)
Nat. Commun.
, vol.6
, pp. 6596
-
-
Montinaro, F.1
-
11
-
-
85018764496
-
Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America
-
Patin, E. et al. Dispersals and genetic adaptation of Bantu-speaking populations in Africa and North America. Science 356, 543-546 (2017).
-
(2017)
Science
, vol.356
, pp. 543-546
-
-
Patin, E.1
-
12
-
-
77955296064
-
Genome-wide analysis of the structure of the south African coloured population in the Western Cape
-
de Wit, E. et al. Genome-wide analysis of the structure of the south African coloured population in the Western Cape. Hum. Genet. 128, 145-153 (2010).
-
(2010)
Hum. Genet.
, vol.128
, pp. 145-153
-
-
De Wit, E.1
-
13
-
-
84875984798
-
Complex patterns of genomic admixture within southern Africa
-
Petersen, D. C. et al. Complex patterns of genomic admixture within southern Africa. PLoS Genet. 9, e1003309 (2013).
-
(2013)
PLoS Genet.
, vol.9
, pp. e1003309
-
-
Petersen, D.C.1
-
14
-
-
77949897520
-
Genetic structure of a unique admixed population: Implications for medical research
-
Patterson, N. et al. Genetic structure of a unique admixed population: implications for medical research. Hum. Mol. Genet 19, 411-419 (2010).
-
(2010)
Hum. Mol. Genet
, vol.19
, pp. 411-419
-
-
Patterson, N.1
-
17
-
-
77954539082
-
Descent of iron age farmers in southern Africa during the last 2000 years
-
Badenhorst, S. Descent of iron age farmers in southern africa during the last 2000 years. African Archaeol. Rev. 27, 87-106 (2010).
-
(2010)
African Archaeol. Rev.
, vol.27
, pp. 87-106
-
-
Badenhorst, S.1
-
19
-
-
84858255503
-
A geo-referenced radiocarbon database for Early Iron Age sites in sub-Saharan Africa: Initial analysis
-
Russell, T. & Steele, J. A geo-referenced radiocarbon database for Early Iron Age sites in sub-Saharan Africa: initial analysis. South Afr. Humanit. 21, 327-344 (2009).
-
(2009)
South Afr. Humanit.
, vol.21
, pp. 327-344
-
-
Russell, T.1
Steele, J.2
-
20
-
-
22944446074
-
The archaeology of southernmost Africa from c.2000 BP to the early 1800s: A review of recent research
-
Mitchell, P. & Whitelaw, G. The archaeology of southernmost Africa from c. 2000 BP to the early 1800s: a review of recent research. J. Afr. Hist. 46, 209-241 (2005).
-
(2005)
J. Afr. Hist.
, vol.46
, pp. 209-241
-
-
Mitchell, P.1
Whitelaw, G.2
-
23
-
-
84968718471
-
-
(eds. Lent, P. & Hebinck, P.) Brill
-
Hebinck, P. & van Averbeke, W. in Livelihoods and Landscapes: the people of Guquka and Koloni and their Resources (eds. Lent, P. & Hebinck, P.) 33-66 (Brill, 2007).
-
(2007)
Livelihoods and Landscapes: The People of Guquka and Koloni and Their Resources
, pp. 33-66
-
-
Hebinck, P.1
Van Averbeke, W.2
-
24
-
-
85037735363
-
-
(eds. Mitchell, P. & Lane, P. J.) Oxford University Press
-
Mitchell, P. in The Oxford Handbook of African Archaeology (eds. Mitchell, P. & Lane, P. J.) 471-488 (Oxford University Press, 2013).
-
(2013)
The Oxford Handbook of African Archaeology
, pp. 471-488
-
-
Mitchell, P.1
-
25
-
-
0025584798
-
Congo to Kalahari: Data and hypotheses about the political economy of the western stream of the Early Iron Age
-
Denbow, J. Congo to Kalahari: data and hypotheses about the political economy of the western stream of the Early Iron Age. African Archaeol. Rev. 8, 139-175 (1990).
-
(1990)
African Archaeol. Rev.
, vol.8
, pp. 139-175
-
-
Denbow, J.1
-
26
-
-
0041397072
-
Empowering places: Rock shelters and ritual control in farmer-forager interactions in the northern province
-
Hall, S. & Smith, B. Empowering places: rock shelters and ritual control in farmer-forager interactions in the northern province. Goodwin Ser. 8, 30 (2000).
-
(2000)
Goodwin Ser.
, vol.8
, pp. 30
-
-
Hall, S.1
Smith, B.2
-
27
-
-
0009196907
-
Symbiotic interaction between black farmers and south-eastern san: Implications for southern African rock art studies, ethnographic analogy, and hunter-gatherer cultural identity
-
Jolly, P. Symbiotic interaction between black farmers and south-eastern san: implications for southern African rock art studies, ethnographic analogy, and hunter-gatherer cultural identity. Curr. Anthropol. 37, 277-305 (1996).
-
(1996)
Curr. Anthropol.
, vol.37
, pp. 277-305
-
-
Jolly, P.1
-
28
-
-
85037748099
-
In interactions between hunter-gatherers and farmers: From prehistory to present
-
(eds. Ikeya, K., Ogawa, H. & Mitchell, P.) Blackwell Publishing Ltd
-
Mitchell, P. in Interactions between Hunter-Gatherers and Farmers: from Prehistory to Present. National Museum of Ethnology (eds. Ikeya, K., Ogawa, H. & Mitchell, P.) 15-46 (Blackwell Publishing Ltd, 2009).
-
(2009)
National Museum of Ethnology
, pp. 15-46
-
-
Mitchell, P.1
-
29
-
-
84869485944
-
The genetic prehistory of southern Africa
-
Pickrell, J. K. et al. The genetic prehistory of southern Africa. Nat. Commun. 3, 1143 (2012).
-
(2012)
Nat. Commun.
, vol.3
, pp. 1143
-
-
Pickrell, J.K.1
-
30
-
-
84867669367
-
Genomic variation in seven Khoe-San groups reveals adaptation and complex African history
-
Schlebusch, C. M. et al. Genomic variation in seven Khoe-San groups reveals adaptation and complex African history. Science 338, 374-379 (2012).
-
(2012)
Science
, vol.338
, pp. 374-379
-
-
Schlebusch, C.M.1
-
31
-
-
33444468455
-
The late iron age sequence in the marico and early Tswana history
-
Boeyens, J. C. A. The late iron age sequence in the marico and early tswana history. South African Archaeol. Bull 58, 63 (2003).
-
(2003)
South African Archaeol. Bull
, vol.58
, pp. 63
-
-
Boeyens, J.C.A.1
-
33
-
-
77249155642
-
Complete Khoisan and Bantu genomes from southern Africa
-
Schuster, S. C. et al. Complete Khoisan and Bantu genomes from southern Africa. Nature 463, 943-947 (2010).
-
(2010)
Nature
, vol.463
, pp. 943-947
-
-
Schuster, S.C.1
-
34
-
-
84884396893
-
Genetic diversity in black South Africans from Soweto
-
May, A. et al. Genetic diversity in black South Africans from Soweto. BMC Genomics 14, 644 (2013).
-
(2013)
BMC Genomics
, vol.14
, pp. 644
-
-
May, A.1
-
35
-
-
84906054037
-
Genome-wide genotype and sequence-based reconstruction of the 140,000 year history of modern human ancestry
-
Shriner, D., Tekola-Ayele, F., Adeyemo, A. & Rotimi, C. N. Genome-wide genotype and sequence-based reconstruction of the 140,000 year history of modern human ancestry. Sci. Rep 4, 6055 (2014).
-
(2014)
Sci. Rep
, vol.4
, pp. 6055
-
-
Shriner, D.1
Tekola-Ayele, F.2
Adeyemo, A.3
Rotimi, C.N.4
-
36
-
-
84922255663
-
Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history
-
Kim, H. L. et al. Khoisan hunter-gatherers have been the largest population throughout most of modern-human demographic history. Nat. Commun. 5, 5692 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 5692
-
-
Kim, H.L.1
-
37
-
-
85008517879
-
Complex ancient genetic structure and cultural transitions in southern african populations
-
Montinaro, F. et al. Complex ancient genetic structure and cultural transitions in southern african populations. Genetics 205, 303-316 (2016).
-
(2016)
Genetics
, vol.205
, pp. 303-316
-
-
Montinaro, F.1
-
38
-
-
84926344277
-
A genomic portrait of haplotype diversity and signatures of selection in indigenous southern african populations
-
Chimusa, E. R. et al. A genomic portrait of haplotype diversity and signatures of selection in indigenous southern african populations. PLOS Genet. 11, e1005052 (2015).
-
(2015)
PLOS Genet.
, vol.11
, pp. e1005052
-
-
Chimusa, E.R.1
-
39
-
-
0036786750
-
Genetic substructure in South African Bantu-speakers: Evidence from autosomal DNA and Y-chromosome studies
-
Lane, A. B. et al. Genetic substructure in South African Bantu-speakers: evidence from autosomal DNA and Y-chromosome studies. Am. J. Phys. Anthropol. 119, 175-185 (2002).
-
(2002)
Am. J. Phys. Anthropol.
, vol.119
, pp. 175-185
-
-
Lane, A.B.1
-
40
-
-
84986300627
-
Fine-scale human population structure in southern Africa reflects ecogeographic boundaries
-
Uren, C. et al. Fine-scale human population structure in southern Africa reflects ecogeographic boundaries. Genetics 204, 303-314 (2016).
-
(2016)
Genetics
, vol.204
, pp. 303-314
-
-
Uren, C.1
-
41
-
-
77950339174
-
Strong maternal Khoisan contribution to the South African coloured population: A case of gender-biased admixture
-
Quintana-Murci, L. et al. Strong maternal Khoisan contribution to the South African coloured population: a case of gender-biased admixture. Am. J. Hum. Genet. 86, 611-620 (2010).
-
(2010)
Am. J. Hum. Genet.
, vol.86
, pp. 611-620
-
-
Quintana-Murci, L.1
-
42
-
-
84893396201
-
A panel of ancestry informative markers for the complex five-way admixed South African coloured population
-
Daya, M. et al. A panel of ancestry informative markers for the complex five-way admixed South African coloured population. PLoS ONE 8, e82224 (2013).
-
(2013)
PLoS ONE
, vol.8
, pp. e82224
-
-
Daya, M.1
-
43
-
-
35348983887
-
A second generation human haplotype map of over 3.1 million SNPs
-
Frazer, K. A. et al. A second generation human haplotype map of over 3.1 million SNPs. Nature 449, 851-861 (2007).
-
(2007)
Nature
, vol.449
, pp. 851-861
-
-
Frazer, K.A.1
-
44
-
-
84928981524
-
Fast and accurate site frequency spectrum estimation from low coverage sequence data
-
Han, E., Sinsheimer, J. S. & Novembre, J. Fast and accurate site frequency spectrum estimation from low coverage sequence data. Bioinformatics 31, 720-727 (2015).
-
(2015)
Bioinformatics
, vol.31
, pp. 720-727
-
-
Han, E.1
Sinsheimer, J.S.2
Novembre, J.3
-
45
-
-
77956534324
-
ANNOVAR: Functional annotation of genetic variants from high-throughput sequencing data
-
Wang, K., Li, M. & Hakonarson, H. ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data. Nucleic Acids Res. 38, e164 (2010).
-
(2010)
Nucleic Acids Res.
, vol.38
, pp. e164
-
-
Wang, K.1
Li, M.2
Hakonarson, H.3
-
46
-
-
84943171338
-
A global reference for human genetic variation
-
Auton, A. et al. A global reference for human genetic variation. Nature 526, 68-74 (2015).
-
(2015)
Nature
, vol.526
, pp. 68-74
-
-
Auton, A.1
-
47
-
-
84858296342
-
Detecting false-positive signals in exome sequencing
-
Fuentes Fajardo, K. V. et al. Detecting false-positive signals in exome sequencing. Hum. Mutat. 33, 609-613 (2012).
-
(2012)
Hum. Mutat.
, vol.33
, pp. 609-613
-
-
Fuentes Fajardo, K.V.1
-
48
-
-
0035173378
-
DbSNP: The NCBI database of genetic variation
-
Sherry, S. T. et al. dbSNP: the NCBI database of genetic variation. Nucleic Acids Res. 29, 308-311 (2001).
-
(2001)
Nucleic Acids Res.
, vol.29
, pp. 308-311
-
-
Sherry, S.T.1
-
49
-
-
85032839456
-
Admixture into and within sub-Saharan Africa
-
Busby, G. B. et al. Admixture into and within sub-Saharan Africa. Elife 5, e15266 (2016).
-
(2016)
Elife
, vol.5
, pp. e15266
-
-
Busby, G.B.1
-
50
-
-
84872333179
-
Deep whole-genome sequencing of 100 southeast Asian Malays
-
Wong, L.-P. et al. Deep whole-genome sequencing of 100 southeast Asian Malays. Am. J. Hum. Genet. 92, 52-66 (2013).
-
(2013)
Am. J. Hum. Genet.
, vol.92
, pp. 52-66
-
-
Wong, L.-P.1
-
51
-
-
84892473992
-
Genome-wide association study of ancestry-specific TB risk in the South African Coloured population
-
Chimusa, E. R. et al. Genome-wide association study of ancestry-specific TB risk in the South African Coloured population. Hum. Mol. Genet. 23, 796-809 (2014).
-
(2014)
Hum. Mol. Genet.
, vol.23
, pp. 796-809
-
-
Chimusa, E.R.1
-
52
-
-
84902537942
-
The role of ancestry in TB susceptibility of an admixed South African population
-
Daya, M., van der Merwe, L., van Helden, P. D., Möller, M. & Hoal, E. G. The role of ancestry in TB susceptibility of an admixed South African population. Tuberculosis 94, 413-420 (2014).
-
(2014)
Tuberculosis
, vol.94
, pp. 413-420
-
-
Daya, M.1
Van Der Merwe, L.2
Van Helden, P.D.3
Möller, M.4
Hoal, E.G.5
-
54
-
-
84945546310
-
Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples
-
Li, S., Schlebusch, C. & Jakobsson, M. Genetic variation reveals large-scale population expansion and migration during the expansion of Bantu-speaking peoples. Proc. Biol. Sci. 281, 20141448 (2014).
-
(2014)
Proc. Biol. Sci.
, vol.281
, pp. 20141448
-
-
Li, S.1
Schlebusch, C.2
Jakobsson, M.3
-
55
-
-
84894349598
-
Ancient west Eurasian ancestry in southern and eastern Africa
-
Pickrell, J. K. et al. Ancient west Eurasian ancestry in southern and eastern Africa. Proc. Natl Acad. Sci. USA 111, 2632-2637 (2014).
-
(2014)
Proc. Natl Acad. Sci. USA
, vol.111
, pp. 2632-2637
-
-
Pickrell, J.K.1
-
56
-
-
84893819461
-
The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists
-
Patin, E. et al. The impact of agricultural emergence on the genetic history of African rainforest hunter-gatherers and agriculturalists. Nat. Commun. 5, 3163 (2014).
-
(2014)
Nat. Commun.
, vol.5
, pp. 3163
-
-
Patin, E.1
-
57
-
-
84893971805
-
Unraveling the complex maternal history of Southern African Khoisan populations
-
Barbieri, C. et al. Unraveling the complex maternal history of Southern African Khoisan populations. Am. J. Phys. Anthropol. 153, 435-448 (2014).
-
(2014)
Am. J. Phys. Anthropol.
, vol.153
, pp. 435-448
-
-
Barbieri, C.1
-
58
-
-
84872074517
-
PCAdmix: Principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations
-
Brisbin, A. et al. PCAdmix: principal components-based assignment of ancestry along each chromosome in individuals with admixed ancestry from two or more populations. Hum. Biol. 84, 343-364 (2012).
-
(2012)
Hum. Biol.
, vol.84
, pp. 343-364
-
-
Brisbin, A.1
-
59
-
-
84864599767
-
Genomic patterns of homozygosity in worldwide human populations
-
Pemberton, T. J. et al. Genomic patterns of homozygosity in worldwide human populations. Am. J. Hum. Genet. 91, 275-292 (2012).
-
(2012)
Am. J. Hum. Genet.
, vol.91
, pp. 275-292
-
-
Pemberton, T.J.1
-
60
-
-
78649730822
-
Genomic runs of homozygosity record population history and consanguinity
-
Kirin, M. et al. Genomic runs of homozygosity record population history and consanguinity. PLoS ONE 5, e13996 (2010).
-
(2010)
PLoS ONE
, vol.5
, pp. e13996
-
-
Kirin, M.1
-
61
-
-
65649088261
-
On the edge of Bantu expansions: MtDNA, y chromosome and lactase persistence genetic variation in southwestern Angola
-
Coelho, M. et al. On the edge of Bantu expansions: mtDNA, Y chromosome and lactase persistence genetic variation in southwestern Angola. BMC Evol. Biol. 9, 80 (2009).
-
(2009)
BMC Evol. Biol.
, vol.9
, pp. 80
-
-
Coelho, M.1
-
62
-
-
84873734497
-
Ancient substructure in early mtDNA lineages of Southern Africa
-
Barbieri, C. et al. Ancient substructure in early mtDNA lineages of Southern Africa. The Am. J. Hum. Genet. 92, 285-292 (2013).
-
(2013)
The Am. J. Hum. Genet.
, vol.92
, pp. 285-292
-
-
Barbieri, C.1
-
63
-
-
84874257252
-
MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa
-
Schlebusch, C. M. et al. MtDNA control region variation affirms diversity and deep sub-structure in populations from southern Africa. BMC Evol. Biol. 13, 56 (2013).
-
(2013)
BMC Evol. Biol.
, vol.13
, pp. 56
-
-
Schlebusch, C.M.1
-
64
-
-
84955135441
-
Group membership, geography and shared ancestry: Genetic variation in the Basotho of Lesotho
-
Montinaro, F., Davies, J. & Capelli, C. Group membership, geography and shared ancestry: genetic variation in the Basotho of Lesotho. Am. J. Phys. Anthropol. 160, 156-161 (2016).
-
(2016)
Am. J. Phys. Anthropol.
, vol.160
, pp. 156-161
-
-
Montinaro, F.1
Davies, J.2
Capelli, C.3
-
67
-
-
84863839456
-
'Of sheep and men': Earliest direct evidence of caprine domestication in southern Africa at Leopard Cave (Erongo, Namibia)
-
Pleurdeau, D. et al. 'Of sheep and men': earliest direct evidence of caprine domestication in southern Africa at Leopard Cave (Erongo, Namibia). PLoS ONE 7, e40340 (2012).
-
(2012)
PLoS ONE
, vol.7
, pp. e40340
-
-
Pleurdeau, D.1
-
68
-
-
79959524146
-
A haplotype map of the human genome
-
The International HapMap Consortium
-
The International HapMap Consortium. A haplotype map of the human genome. Nature 437, 1299-1320 (2005).
-
(2005)
Nature
, vol.437
, pp. 1299-1320
-
-
-
70
-
-
84975247210
-
Indian ocean slaves in Cape Town, 1695-1807
-
Worden, N. Indian ocean slaves in Cape Town, 1695-1807. J. South. Afr. Stud. 42, 389-408 (2016).
-
(2016)
J. South. Afr. Stud.
, vol.42
, pp. 389-408
-
-
Worden, N.1
-
71
-
-
0024284028
-
A simple salting out procedure for extracting DNA from human nucleated cells
-
Miller, S. A., Dykes, D. D. & Polesky, H. F. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res. 16, 1215 (1988).
-
(1988)
Nucleic Acids Res.
, vol.16
, pp. 1215
-
-
Miller, S.A.1
Dykes, D.D.2
Polesky, H.F.3
-
72
-
-
84881018840
-
Isaac: Ultra-fast whole-genome secondary analysis on Illumina sequencing platforms
-
Raczy, C. et al. Isaac: ultra-fast whole-genome secondary analysis on Illumina sequencing platforms. Bioinformatics 29, 2041-2043 (2013).
-
(2013)
Bioinformatics
, vol.29
, pp. 2041-2043
-
-
Raczy, C.1
-
73
-
-
77956295988
-
The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
-
McKenna, A. et al. The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. Genome Res. 20, 1297-1303 (2010).
-
(2010)
Genome Res.
, vol.20
, pp. 1297-1303
-
-
McKenna, A.1
-
74
-
-
68549104404
-
The Sequence Alignment/Map format and SAMtools
-
Li, H. et al. The Sequence Alignment/Map format and SAMtools. Bioinformatics 25, 2078-2079 (2009).
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
-
75
-
-
84930213392
-
Second-generation PLINK: Rising to the challenge of larger and richer datasets
-
Chang, C. C. et al. Second-generation PLINK: rising to the challenge of larger and richer datasets. Gigascience 4, 7 (2015).
-
(2015)
Gigascience
, vol.4
, pp. 7
-
-
Chang, C.C.1
-
76
-
-
84991456722
-
HaploGrep 2: Mitochondrial haplogroup classification in the era of high-throughput sequencing
-
Weissensteiner, H. et al. HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing. Nucleic Acids Res. 44, W58-W63 (2016).
-
(2016)
Nucleic Acids Res.
, vol.44
, pp. W58-W63
-
-
Weissensteiner, H.1
-
77
-
-
84874364784
-
AMY-tree: An algorithm to use whole genome SNP calling for y chromosomal phylogenetic applications
-
Van Geystelen, A., Decorte, R. & Larmuseau, M. H. D. AMY-tree: an algorithm to use whole genome SNP calling for Y chromosomal phylogenetic applications. BMC Genomics 14, 101 (2013).
-
(2013)
BMC Genomics
, vol.14
, pp. 101
-
-
Van Geystelen, A.1
Decorte, R.2
Larmuseau, M.H.D.3
-
78
-
-
33746512512
-
Principal components analysis corrects for stratification in genome-wide association studies
-
Price, A. L. et al. Principal components analysis corrects for stratification in genome-wide association studies. Nat. Genet. 38, 904-909 (2006).
-
(2006)
Nat. Genet.
, vol.38
, pp. 904-909
-
-
Price, A.L.1
-
79
-
-
69749099417
-
Fast model-based estimation of ancestry in unrelated individuals
-
Alexander, D. H., Novembre, J. & Lange, K. Fast model-based estimation of ancestry in unrelated individuals. Genome Res. 19, 1655-1664 (2009).
-
(2009)
Genome Res.
, vol.19
, pp. 1655-1664
-
-
Alexander, D.H.1
Novembre, J.2
Lange, K.3
-
80
-
-
34547861256
-
CLUMPP: A cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure
-
Jakobsson, M. & Rosenberg, N. A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23, 1801-1806 (2007).
-
(2007)
Bioinformatics
, vol.23
, pp. 1801-1806
-
-
Jakobsson, M.1
Rosenberg, N.A.2
-
81
-
-
84905579746
-
Whole-genome sequence variation, population structure and demographic history of the Dutch population
-
The Genome of the Netherlands Consortium.
-
The Genome of the Netherlands Consortium. Whole-genome sequence variation, population structure and demographic history of the Dutch population. Nat. Genet. 46, 818-825 (2014).
-
(2014)
Nat. Genet.
, vol.46
, pp. 818-825
-
-
-
82
-
-
0021566877
-
Estimating F-statistics for the analysis of population structure
-
Weir, B. S. & Cockerham, C. C. Estimating F-statistics for the analysis of population structure. Evolution 38, 1358-1370 (1984).
-
(1984)
Evolution
, vol.38
, pp. 1358-1370
-
-
Weir, B.S.1
Cockerham, C.C.2
-
83
-
-
84871952176
-
Improved whole-chromosome phasing for disease and population genetic studies
-
Delaneau, O., Zagury, J. F. & Marchini, J. Improved whole-chromosome phasing for disease and population genetic studies. Nat. Methods 10, 5-6 (2012).
-
(2012)
Nat. Methods
, vol.10
, pp. 5-6
-
-
Delaneau, O.1
Zagury, J.F.2
Marchini, J.3
-
84
-
-
84926320923
-
Demography and the age of rare variants
-
Mathieson, I. & McVean, G. Demography and the age of rare variants. PLoS Genet. 10, e1004528 (2014).
-
(2014)
PLoS Genet.
, vol.10
, pp. e1004528
-
-
Mathieson, I.1
McVean, G.2
|